Scomber scombrus (Atlantic mackerel): 134004204
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Entry
134004204 CDS
T10651
Symbol
ppfia2
Name
(RefSeq) liprin-alpha-2 isoform X1
KO
K26226
liprin-alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134004204 (ppfia2)
Membrane trafficking [BR:
ssco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
134004204 (ppfia2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
DUF3772
Crescentin
Motif
Other DBs
NCBI-GeneID:
134004204
NCBI-ProteinID:
XP_062299376
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Position
22:complement(15003108..15143617)
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AA seq
1235 aa
AA seq
DB search
MMCEVMPTISEDTALSQRGSQSSSSDPDSHFEQLMVNMLDERDRLLDTLRETQESLGLSQ
QHLQDVIYDRDSLQRQLSSALPQEFAALTKELNACREQLLEKEEEISELKAERNNTRLLL
EHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVS
LERVSALEEELTAANQEIVALREQNAHIQRKVASGDGEDILEGSETQQKVHSKRLSNGSL
ESAHDASQVVELQDLLEKQNYELAQMKERMSSLSSRVSEVEQELETARKDLIKSEEMNNK
YQRDIKEAMCQKEDMEERIVTLEKRYLSAQRESTSVHDINDKLENELANKEAFLRQMEEK
NRQLQERLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGSIEERMRHLECQL
EEKNQELLRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQDS
EGYRKQYEDSIHEKTQLAEEIDKLRSELDQFRLRAGSLTEPTLSRSHLDTSAELRFSLGS
LAETQSDHYRSAKVIRRPRRGRVGLRETKAKSLGEHEWRSQQLGVLGGHHFESDTEMSDI
DDDDRETLFSSMDLLSPSGHSDAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIEN
RVASVSLEGLNLARMHHHGASITASATASSLASSSPPSGHSTPKLDPRSPARDMERMGVM
TLPSDLRKHRRKIAAVEEDGREDKATIKCETSPPATPRTVRMTHTLPASSHNDARGIVAS
LEAEASALSSVASSQDSLHKQPKKKGIKSSIGRLFGKKEKGRMAHMAHRHVMVDPQATMM
DADMAGQEMGVGKLGTQAEKDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMP
AWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPTSR
TASGNVWVTHEEMETMAAPSKTSDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSY
FMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKKLNYDRKELERRREHSQH
EMRDVLVWSNERVIRWVQSIGLRDYANILLESGVHGALVALDDNFDYSSLALLLQIPNQN
TQARQILEREYNNLLALGTDRRLEECDDKDFRGPSWRRQFPPRDVHGISMMPGSAETLPA
GFRLTASGHPRRLPPEVGPSAVQRLDSSTVRTYSC
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcgaggtgatgcccaccatcagcgaggacacagcgctgagccagcgcggctct
cagagcagctcctcggacccggactcccactttgagcagctgatggtcaacatgctggac
gagagggaccgactgctggacacgctgagggagacccaggaaagcctcggactgtcccag
cagcacctgcaggacgtcatctatgaccgtgactcactgcagcgccagctcagctctgcc
ctgccacaggagtttgctgcgctgaccaaggagctgaacgcctgcagggagcagctgctg
gagaaggaggaggagatctctgagctcaaagccgagaggaacaacaccaggctactgctg
gaacatctggagtgcctggtgtccagacatgagcggtcacttcgtatgacagtggtcaag
cgacaggctcagtctccctcaggagtctccagcgaagttgaggtcctcaaagcactcaag
tccttgttcgaacaccacaaagccctcgatgagaaggtaagagagagactacgggtgtca
ctggaaagggtgtctgccttggaggaggagctgacagcagccaatcaggagattgtggcc
ttacgggaacagaatgctcacatccagaggaaagtggcgtccggagatggagaggacata
ctggagggtagtgaaactcaacaaaaggtccacagcaagcgtctgtccaatggctccctg
gagtcggcccacgatgcgagccaggtggtggagctgcaagacctgctggagaagcagaac
tacgagctggcccagatgaaggagcgcatgtcctccctctcctcccgggtctccgaggtg
gagcaggagctggaaaccgcacgcaaggacctcatcaagtcagaggagatgaacaacaag
taccagagggacatcaaagaggctatgtgtcagaaggaagacatggaggaacggatcgtc
acgttggagaaacgctacctgagcgcccagcgagagtccacctcggttcacgacatcaat
gacaaactggagaacgagttggccaataaagaggcattcctcagacagatggaggagaag
aacaggcagctacaggagaggctggagcttgcagagcagaagctccagcagaccatgagg
aaggcggagacgctgccggaagtggaggctgaactggcccagaggatagcagccctcact
aaggcggaggagcgtcacggaagtattgaggagcgaatgaggcacttggaatgccagctg
gaggagaagaaccaggagctgctacgggctcgacagagagaaaagatgaacgaggaacac
aacaagcgactctctgacacggtggacaggctcctcacagagtccaacgagcgtcttcag
ctccacctgaaggaacgaatggcagctctagaagagaagaatgtgttaattcaagactcg
gaaggttacaggaaacagtacgaggactcaatacatgaaaagacgcagctggcagaggag
atagataaactgagatcagagctcgaccagtttagattgagggcaggctccctcacagaa
cccaccctgtcaaggtctcatctggacacatcagccgagcttcgattctcgttgggatct
ctggctgaaacccagtcggaccactaccgctcagccaaagtcatccgccggccaagaaga
ggtcgagttggtctgcgggaaaccaaggctaagtcactgggggaacatgaatggcgttcg
cagcagctcggggttctgggaggccatcacttcgagagcgacacagagatgtcagacatc
gacgatgatgacagggaaacattgttcagctccatggacctcctctcacccagcggccac
tctgatgcacaaaccttggccatgatgttgcaagagcagctggacgccatcaacaaggag
attcggctgatacaggaggagaaggagtcgacggagctgcgggcggaagagattgagaac
cgggtggccagcgtcagcctggaaggcctcaacctggcccgtatgcaccaccacggagcc
tccatcactgcctcagccaccgcttcctcccttgcgtcctcctccccacccagcggacac
tccacccctaaacttgaccctcgaagccccgctcgtgacatggagcggatgggggtcatg
acactgcccagtgatctgaggaaacataggagaaagatagcagcggtggaagaggatggc
cgcgaggacaaggccaccataaagtgtgagacatcgccccctgcaacgccacgcaccgtc
cgaatgacacacacactgccagcctcctcgcacaatgatgcacgagggatcgtggcctct
ctggaggctgaggccagcgccctgagtagtgtagccagcagccaagactccctccacaag
caaccgaagaagaaaggcatcaaatcctccatcgggcgacttttcggcaagaaggagaaa
ggccgaatggcacatatggcacacagacatgtcatggttgatccacaagccaccatgatg
gacgctgacatggcaggccaggaaatgggtgtaggcaagctgggaactcaggctgagaag
gaccgcagattgaaaaagaaacatgaactattggaggaagccaggagaaagggtttacct
ttcgcccaatgggacggccccacggttgtagcctggctggagctgtggttgggaatgccg
gcctggtacgtggcagcgtgccgtgccaacgtgaagagtggagccatcatgtcagcccta
tctgacaccgagatccagagggagatcggtatcagtaaccctcttcaccggctcaaactt
cgcttggccatccaggagatggtctccctcaccagcccctccgccccgccaacctccaga
accgcgtcaggcaatgtatgggtgacccatgaggagatggagaccatggcagccccttcc
aaaacgtcagactctgaagaggggagctgggcacagactctagcttatggcgacatgaac
catgagtggatagggaacgagtggctgcccagtctaggactacctcagtaccgcagctac
ttcatggagtgcctggtggatgcccgcatgctggaccaccttacaaagaaagacctgagg
gtgcacctcaagatggtggacagcttccacagaacaagtttacagtatggaatcatgtgt
ctgaagaagctcaactatgacagaaaggaactggagcgacgtagagagcacagccagcat
gaaatgagagacgttctggtgtggagtaatgagagggtcatccgttgggtgcagagcata
ggcctgcgggactatgccaacatcctgctggagagcggggtgcacggagccttggtcgcc
ctggatgataactttgactacagcagcctggcgctgctcctccaaatccccaaccaaaac
actcaggcacgtcagattctggagcgagagtataataatttgctggcgctgggcactgac
aggagactggaagagtgtgatgacaaagacttcagaggtccatcgtggaggaggcagttc
ccaccgcgggacgtgcacggtatcagtatgatgcccggatcagcagagactctccctgct
ggattccgtctcactgcgtctggtcacccccgaagactgccccctgaggttggaccctct
gcggtgcagcggctggacagctccacggtgagaacctattcctgctga
DBGET
integrated database retrieval system
