Scomber scombrus (Atlantic mackerel): 134004244
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Entry
134004244 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat-containing G-protein coupled receptor 5-like
KO
K04308
leucine-rich repeat-containing G protein-coupled receptor 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
134004244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ssco04030
]
134004244
G protein-coupled receptors [BR:
ssco04030
]
Rhodopsin family
Others
R-spondin
134004244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
LRR_14
LRR_9
7tm_1
LRR_EndoS
LRRNT
LRR_R13L1-DRL21
LRR_6
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
134004244
NCBI-ProteinID:
XP_062299439
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Position
22:complement(22408555..22451847)
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AA seq
968 aa
AA seq
DB search
MPGFVTLLAAFAALSAGLRNSVAGVEMHHSLAVQESSLAGVESSLAGLESAAAGVNSSAV
AKVETSGDGDRGAGRSGCPGRCRCEVDGLLHRVDCSDQGLREIPSNLSVFTSYLDLSMNN
LTVLSSGALSNLHFLEELRLAGNDLSFIPRGAFAGLYNLKVLMLQNNQLRSVPAEAFNNL
HNLQSLRLDANHISSVPIGCFSGLRSLRHLWLDDNSLTEVPVEALSELPALQAMTLALNH
ISHVPDHAFSKLGRLVVLHLNNNRIVSMGTNSFHGLHSLETLDLNYNSLVEFPTAIRSLS
HLKELGFHSNNIQSIPEHAFTGNPRLITIFFYDNPIQSVGRSAFQNLPELRTLSLNGAAD
LTEFPDLTGTKSLESLTITGARITSLPGSVCEQLPNLQLLDLSYNQIQTLPNFSGCESIQ
KIDLHHNEIEELEENTFHGLMSLRSLDLSWNRLTTVKTNSFSALPALNKLDLSSNQLSSL
PLVGLQSLTHLRLAGNTQLMELLPREDLPRVRVIELPYAFQCCAFVSCERRGGGGGGGGG
GSSSWEREEAADPSGRDNTFASSQVDQDWEDFLLEFEDEPKPQHSVHCSPAPGPFRPCLR
LLGSWLIRGGVWLIAALSLVSNALVVLSVFFSPASSVTPPKLLIGLLALVNGLMGVWSGW
LAAVDAWTFGSFWRYGARWESSFLCRLSGFLCVFASQTGLFLLTVAALERYLASDARRHK
ADGHSGQSSSPLSVRLAVCLCFLLGLAVTLPPLVAGHSSTSLCLPLPSSSSSSSLAFSVS
LVLLDSLCFLLMTLAYTRLYCRANKAPPTTEEEAALTRHVAWLLFSDCLLYLPVAFLSFS
SLLRLPAAGPEAAKGVLLLVAPLPACVNPLLYLLFNPLAREELSALVKRTCCAAVVLRLG
RGGRGGGAGSRSRPGTMDLTYDEDAEKQSCDSTQALVAVGGVKEEEEEGRRRIKSNTQDS
VAFVVQHH
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccgggatttgtgactttgttggccgcttttgcagccctctcagccgggttaagaaac
tcagtggccggggtggagatgcaccactccttggccgtgcaggagagttccttggccggg
gtggagagctccttggccgggttggagagcgctgcagccggggtgaacagctccgcggtg
gccaaggtggagacctccggggacggagacagaggagcggggaggagcggctgccctggc
cgctgtcggtgcgaggtggacgggctgctgcaccgggtggactgctcggatcaggggctc
cgggagataccgagcaacctgagcgtctttacatcataccttgacctcagtatgaataat
ctgactgtgttgtccagtggagctctgtccaacctgcacttcctggaggaactacgtttg
gcgggaaatgatctgtcgttcatccccagaggagcgttcgcaggcctctacaacctcaaa
gtgctgatgcttcaaaacaaccagctgagatcagttcctgctgaagccttcaacaacctg
cacaacctgcagtcactccgtctggacgccaatcacatctccagcgttcccattggctgc
ttctccggcctgcgttcgctgcgtcacctgtggttggatgataactctctgacggaggtg
ccggtggaggctctgagcgagctgcccgccctgcaggccatgacgctcgccctcaaccac
atcagccacgtacccgatcatgccttcagcaagctgggccgcctggtggtgctgcatctc
aacaacaataggatcgtttccatgggaacaaactccttccacggactccacagtttggag
acgctggatttgaactacaacagtctggtcgagtttccgacggcgatccgctcgctcagt
catctgaaggagcttggtttccatagtaacaacatccagtctattcccgagcacgccttc
actgggaatcctcgcctcatcaccatatttttctacgacaacccgatccagtctgtcgga
cgctcggcttttcagaacctcccagagttacgaacgctctctctgaacggagcagcagat
ctcaccgagtttccagatctgacgggaaccaagagcctggagagcctgaccatcactgga
gctcggatcacctctctgcctgggtcagtgtgtgagcagcttccaaacctgcagctgctt
gatctctcctacaatcagatccagactcttcccaacttctccggctgcgagagcatccag
aagattgatctgcaccataacgaaatagaggaactggaggagaacaccttccacggtctg
atgtcactacgctctctcgatttatcgtggaaccgactgacgacggtgaagacgaactcg
ttctctgctctgccggctctgaacaaacttgacctgtcgtccaatcagctgtcgtctctg
cctctcgttggtctgcagagtttaactcacctgcgactggctggaaacactcagctgatg
gagttattaccccgagaggacctgccaagagtcagagtgattgagcttccttacgccttc
cagtgctgtgccttcgtctcctgtgagaggagaggaggaggaggaggaggaggaggagga
ggaagctcatcctgggagagagaggaggcagccgacccttctgggagagacaacaccttc
gcatcgagccaagtcgatcaggactgggaggacttcctgttggagtttgaagatgaaccc
aaacctcaacactcggtccactgcagccctgctccaggaccgttccgtccctgtctccgt
ctgctcggcagctggctgatccgtggcggcgtttggctcatcgctgcgctctcattggtc
agcaacgccctcgtggtcctgtccgtcttcttttcccccgcctcctccgtcacaccgccc
aagctgctgattggcctgctggctctggtgaacggcctgatgggagtctggagcggctgg
ttggcggccgtggacgcctggacgttcggcagcttctggagatacggggcgaggtgggag
agcagcttcctgtgtcgtctcagcggcttcctgtgtgtgtttgcgtcgcagaccggcctc
ttcctgttgaccgtcgcagctctggaacgatacctggcctccgacgcacgccgccacaaa
gctgacggccacagcggtcaatcctcgtcgccgctctccgtccgtctggccgtctgtctg
tgcttcctgttgggcctggccgtcacgctgccccctctggtggccggacacagtagcaca
tccctctgtttgccgctgccttcctcctcctcttcgtcctctctggctttctccgtgtcc
ttagtgctgctcgactcgctctgtttcctcctcatgacgctcgcctacactcgcctgtac
tgtcgcgccaacaaagctccgcccaccactgaagaggaggcggcgttgactcgacatgtg
gcgtggctgcttttctctgattgcctcctctacctccctgtggccttcctctccttctcc
tccctgctgcgcctccctgccgccggccccgaggcagcaaagggagtgctgctgctggtg
gcgccgctgcctgcctgcgtcaacccgctgctctacctcctcttcaacccgctcgcccgg
gaggagttgtccgcactcgtcaaacgcacctgctgcgccgccgtggtactgaggctcggc
cgaggaggaagaggaggaggagctgggagcaggtcgaggccaggaacgatggatttaacg
tacgacgaggacgcagagaaacagtcgtgcgactcgacgcaggcgctggtggcagttgga
ggcgtgaaggaggaagaggaggaggggagaagaaggataaagagcaacacacaagattca
gtggcgtttgttgttcagcatcactag
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