Scomber scombrus (Atlantic mackerel): 134004378
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Entry
134004378 CDS
T10651
Symbol
ddx19b
Name
(RefSeq) ATP-dependent RNA helicase DDX19B isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134004378 (ddx19b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134004378 (ddx19b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF1028
PP-binding
Motif
Other DBs
NCBI-GeneID:
134004378
NCBI-ProteinID:
XP_062299600
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Position
3:complement(13370488..13378449)
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AA seq
488 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGSLQIKEKPEENGTAANTTDSSSASAKSEAEGENKTAEED
DNDDKAAQSLLNKLIRNNLVNTTNQVEVLQKDPNSPLYSVKSFEELRLKPQLLQGVYGMG
FNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPMNRYPQCLCVSPT
YELALQTGKVIEQMGKHYPEVQLVYAIRGNKLQRGMKLQEQIVIGTPGTMLDWCGKFKFI
DPKKIRVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEESVWNFAKRIVPD
PNIIKLKREEETLDTIKQYYVLCNSREEKFQALCNIYGAITIAQAMIFCHTRKTAGWLAG
ELSREGHQVALLSGEMQVEQRAAVIERFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLP
IDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRMSMNILNRIQEHFNKKIEKLDTDDL
DEIEKIAS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctacggactcctgggcgcaggcggtggacgaacaagaagcagcggcggaatcgatc
gggagcctccaaataaaagagaaaccagaggagaatggtaccgctgcaaatacaacagac
tctagcagtgcgtctgcaaagtcagaagcggaaggagagaacaagactgcagaggaagat
gacaatgatgacaaagcagcgcagtcattgctgaacaagttgatacggaataatcttgtc
aataccactaatcaagtggaagttcttcaaaaggatcccaactctccgctctactctgtc
aagtcctttgaggagttgcgactgaaaccacagctgcttcagggcgtgtacggcatgggt
ttcaaccggccatccaaaatccaggagactgccttacctatgatgttagctgaacctcca
cagaatctgattgcccagtcgcagtcaggaacagggaaaaccgccgcctttgtcttggcc
atgctcagccatgtagatcctatgaacagatacccgcagtgcctgtgtgtgtcacccacc
tacgaactggcacttcagactggcaaggtaatcgagcagatgggcaaacactatcctgag
gtccagttagtctacgccatcaggggaaataagctgcagaggggcatgaagctgcaggaa
cagatagttattggtacacctggtaccatgctggactggtgcgggaagttcaagttcata
gaccccaagaagatcagggtgtttgtgctggacgaggctgacgtcatgatcgcaacgcag
ggtcaccaggaccagagtatccgcatccagaggatgctgcccaaaaactgccagatgttg
ctgttttcagccacatttgaagagtcggtgtggaacttcgccaagcgcatcgtgcctgac
cccaacatcatcaaactgaaaagagaggaggagacgctggatactatcaaacagtactat
gtgttgtgcaacagcagggaggagaagttccaggccttgtgtaacatctacggagccatc
accattgcccaggccatgattttctgccatacaaggaaaactgcaggctggctggcaggg
gagctttccagggagggccaccaggtggcactgctcagtggcgagatgcaggtcgagcag
agggctgcagtcattgaacgcttcagagatggcaaggagaaggtcctggtcaccacaaat
gtttgtgcacgaggcattgatgtggagcaggtgtccgtggtgatcaactttgacttgcca
atagacaaggatggtaacccagacaacgagacatacctgcacaggattggccgcacaggt
cgatttggcaagaggggactggccatcaacatggtggacagcagaatgagcatgaacatc
ctcaacaggatccaggagcatttcaataaaaaaattgaaaaattagacacagatgatctg
gatgaaatcgagaaaatcgccagctaa
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