Scomber scombrus (Atlantic mackerel): 134004402
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Entry
134004402 CDS
T10651
Symbol
si:dkey-159a18.1
Name
(RefSeq) sortilin
KO
K12388
sortilin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
134004402 (si:dkey-159a18.1)
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
134004402
NCBI-ProteinID:
XP_062299639
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Position
22:complement(17120938..17131611)
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AA seq
830 aa
AA seq
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MIWRFVVLSGVCVLLHCSEVLGRDVKSSERRTVTFSRTQQDDSQGQVRTRSRRDTSTSSG
AFKPSHGPPFTSCRLSLTPSEHKVLDDNTHETGFNGDDGSYVILTWVGDGTGVILVLSTI
SAPIDSFFDGGSSRLYRSTDYGKSFHDISHRINNTFIKEEFGVSVGPGSSVILTADTPVV
DHPGGIIFTSTDAGATFKFIQLPFHLAQPITYHFLNPDYLVALSIDGSLWLSLDFGAKWT
KVHDGVHSFSWGGGINLFFSCSKIDTVEAEERGDLQLKRTQDLGKTFTTIHEDIYSFGYI
GTFLFFSVMEDMRAPRVMYFSSDQGDTFSKALLPSASTEQFYSILDGDEDMLFMHVDNPG
DTYFGTMYTSDDRGILFSKSLERHLFDGHRKSDFTNITSLRGVYLTNKLDEDGRIRSVIS
FNRGGTWRQLNKPENVECGEKVKNCNLHIHGEHSRNNHIIPMLPLSEPTAIGLVIAHGTV
GDSLSSSQNPDVFVSSDGGYNWRGTLRGPHHYSILDSGGLIVAVEAQREGQVKTIKFSTD
EGRCWKSYNFTEQPLFFAGLASEPATKAMNVSVWGFRPEEDGQPMWVAITIDFQSLITRE
CNDQDYEEWLAHSTDGRDSETDDCVLGVKETYRRLKKQSVCRNGRGYVVRKKQSPCLCTR
EDYICDYGYYRHVNTSECVRQPSTANKTLEICLNGEEDELLTTGYRKVPSDRCEGGFTPQ
LAEQTVIRPCGVKPSPGPPARSKSPVHFDTPRERLVLILVCAGAGVIVLIAIVSAVFAVR
RTVYRDRTPVYRFSNLQIQDDDNCMTADLESGTSSNGTACLQDSDDDLIG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgatctggagatttgtggtcctcagtggggtgtgcgtccttcttcactgttctgaagtg
ctgggaagagatgttaaaagcagcgaaagaaggacggtgacttttagccggactcagcag
gatgatagccagggccaagtgcgcacacgctccaggagggacacaagcacttcctcaggc
gcttttaagccttctcacggtccccccttcacctcctgccggctctccctgaccccatcc
gagcacaaggttctggatgacaatacacatgagacaggttttaatggtgatgatggctcc
tatgtaattctcacatgggtgggcgatggtacaggagtaatcctagtgctgtccacaatt
agtgctccgattgattctttctttgatggaggctcctcacgactttacagaagtacggat
tatgggaagtccttccatgacatctcccaccgcatcaataacaccttcataaaggaggag
tttggagtcagcgtgggaccagggagctctgtaattctgacagcagacacaccagtggta
gaccatccaggagggatcattttcacctccacagatgccggcgcgacctttaaattcatc
cagctgccattccacctagctcaaccaatcacataccacttcctcaaccctgactacctc
gtggccctcagcattgatggcagtctgtggctttctctggactttggcgccaagtggaca
aaagttcatgatggagtgcattctttctcatgggggggtggcattaatttgttcttcagc
tgcagtaaaatagacacagttgaagcagaggagaggggagatttacagctgaagaggacg
caggatttggggaagacgttcaccacaatccatgaggacatctacagttttggctacatt
ggaacctttctcttcttctctgtgatggaagatatgagagccccccgagtcatgtacttc
tcatcggaccaaggagacaccttcagtaaagcactgctaccttctgcctccactgagcag
ttttactccatcctggatggagatgaggatatgctcttcatgcatgtggacaatccagga
gacacctactttggaaccatgtacacatcagatgaccgtggtattttgttctccaaatca
ctggagcgccacctgtttgatgggcataggaagagcgatttcaccaacatcacttcactg
agaggagtctacctcactaacaaactagacgaggatggacgaataagatctgtgatttcc
tttaatagaggagggacgtggaggcaactgaacaaacctgagaatgtagaatgtggagag
aaagtaaaaaattgcaaccttcatattcatggggaacacagtcgcaacaaccacatcatt
cccatgcttcctctatctgagccaactgctatcggtctggttatcgcccatggtactgtg
ggtgactctctgtcatcgtcgcagaacccagatgtgtttgtttcctcagatgggggttat
aactggaggggaactctgagaggtcctcaccactacagcattttggactctgggggtctc
attgtggctgttgaggcacagcgtgaaggacaagtcaagactatcaagttctccacagat
gagggccgttgctggaagtcctacaactttactgagcagcccttattcttcgcaggtctg
gcatctgagccggccacaaaggctatgaatgtcagtgtgtggggcttcaggcctgaggaa
gatggccagcccatgtgggtggccatcaccattgacttccagagcctcattaccagagag
tgtaatgaccaggactatgaagagtggttggcccactcaacagatggaagagactcggag
acagacgactgtgtcctgggtgtcaaggagacttacaggaggctaaagaaacaatctgta
tgcagaaatggtcgcggctatgtggtgaggaagaaacaaagcccctgtctgtgcaccaga
gaggattatatatgtgactatggttattatcgtcacgtgaacacttcagagtgtgtgaga
caacccagcactgcaaataaaaccttggagatctgtctgaacggagaggaggatgagctt
ctgacaacaggataccgtaaagtcccaagtgataggtgtgaggggggattcactccacag
ctggcagaacagacagtcatcagaccctgtggtgttaaacccagtcctggtccacctgcc
agatctaagtctccagtccactttgacacaccgcgagagaggctggtgttgatactggta
tgtgcaggagctggagtcatcgtcctgatagctatcgtttctgctgtctttgctgtcaga
agaacagtttatagagacaggacaccggtgtatcgtttctccaacctccagattcaggat
gatgacaactgcatgacagctgatctcgaaagcggcaccagcagcaatggcacggcctgt
ctgcaggactcagacgatgatcttattggatga
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