Scomber scombrus (Atlantic mackerel): 134004457
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Entry
134004457 CDS
T10651
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssco03009
]
134004457 (utp20)
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
134004457 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
HOOK_N_NuMA
ELMO_ARM
Motif
Other DBs
NCBI-GeneID:
134004457
NCBI-ProteinID:
XP_062299723
LinkDB
All DBs
Position
22:complement(7651651..7671465)
Genome browser
AA seq
2827 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLANVNIDVIHRIDRTGSFAEEVETYFSEGLTKWRDL
NLTEHFTTFLKEVSNKSQSFNMLVFHQKTIVETLKTHLAVKDSLAYQPLLDLVVQLARDL
QTDFYPHFPDFFLLITSLLDTKDTEVLEWAFTCLSYLYKYLWRLMVKDMNNIYSLYSTLL
AHKKEHIRKFAAESFSFLMRKVPDLDALLTHVFSDLQQHPDKAEGTGQLLFEMCKGVRNM
FHSCAANALPVALRKLGPTANQEVSLPWDTVRDTLDHMGQAAANHVEKEHFLVLWESLQV
RVVEVLGVMEAKGEEAEQATEQLERLLFIFQTLVSHRDGAKVTKPEAVCQTVLRLVKSSA
LSASCSRLLLQIISSLLLGENISLPETLIRETVQKVFGSTMGQDLILEFTKEMFTMKHFE
QLFLPSLLRFTTGLFGCGDPLSRHYGLEVLVSLILAKAPPPTDGSMAFETYPLLFTGQIT
GVFSIKEAGQASPEQLAVPELVLSLIKLPEEQNQPITDLSLLWASLVLLPHLRPLVPASI
VPAVTAFLNHLLCEIETENLGKAGLFVATQALSCLLNLDGSAQLLSLVPVDNISSILRKF
PSDLSALLLGDLYYTRLSLSGVSEHLSHSALLELYQILHTNLSSNISKIRLLTLRILSHF
EAELPPQTEGEENVEVQPVFAVCLQAELVPASVQDYREKLLHLRKMRHDLVQRSLPQGPQ
GTFQQVPLRYLIAMLFVNFKPLWDAVIELVVSHARGMDNKDFWMVYHEHLEMVAGIAEKE
LQEYDEEDDDDESESDLHGEPGCDVIESGDMGVLFLQQLKSTFNPNERTDFPNFRSLLWR
AMAQFPERVEPRSRELSPLLLRFIRNEFYNADLQVAPTQDLRKRNDANPEESGMAGEEEE
EKDEEEPEEESRQQRKGPPRRAAAKQLIAHLKVFAKFTNPRSLCLESSLSELYNQLLCHQ
DHQIQRVALECILTYKDSNIVPYKENLERLLDDKHFKEEIVHFNISEETEVIDASHRAKL
IPVLMRILFGRLRTKAGSKFQGKASASTRSSIILRFLAGCHEEELGMFIDLLLEPVCHHS
QGSCLAAVERAIAETDVGAVLPLGRQHSLLNVIHVVIQKLGHLIQIYLPKVLQILLCVTA
SVSTILDSRDQLRAGCISPLKNLRRLGILRIQDFFDGFDCYSFTPDELDAVFQAVVWPQV
CRLPTESPYSPTPLLKLIHVWCKNPRFFPLLAKQRPDHPECGVLLNVFALLSAKKASTVT
IAMVMDIAEALATTEDFVASESETELSVNSSVFPQPKEGALITADSISQGSRLLLPHIST
LLQYLSSVVRNTDRLKKKKFRAQVAKELNILSKVSRFVSDKEQSSVLISLLLPYLQKGKN
LQETEIDILATIQNLLRQCVQPTTFLRPLSKLFSVIHNKLPRRALINVFQTLSDLDPSLT
YITDVTTKLNALDSRHLDEIHFDVRLTAFQEATRHIKDMQTLDLDFIGAIIHNCFHTYEI
GDMSLGDNATLFLSAVITQLAAVGAGEQMYKDIIQHTILDAVHKGLRNKTESVQHEYTCV
LACLVKTFPSRKEFRDLVQLTDYNDLESDFFEHMKHIQIHRRGRALRKLAKQLTEGTVIM
TPRSLQNYIMPYAMTILLDEKMLKHENMTSASVEVVGAVCRRLTWSKYLFYLKHFVHILQ
TGQAEQKLAVSLLVTVLDAFHFDHQTLSREMEAAKARDGGSVKMDAGDEAEDAAEESDAS
DDEEPMEVDSKAAASDVPMETDTPDKEKDGISKEAAASKTEKPPAPKPVVAPSGLPQSKE
ELETLIKAIHQTVNDSVLPRLQRCLTAKVKRDEEHKAVKSKEVKDEEVARVPIAFAMVKL
MQTLPPNIMETNLPGILIKVCVLLRNRFQEIRDVARGTLVKILETLGGKYLQFLLKEMQG
ILVKGYQVHVLTFTVYQLISVLTPTLKSGDLDPCMNMLIDIFNNELFGAVAAEKEVKGIV
SKLMEARHSKSMDSYELLAQFCSKESITKLILPLKEILETSASLKVCIRVTAVMRRLVLG
LLVNDGMNSQDILLLSHGLVSESLPLLTKRDREKASAKSPLDPRLPPPSCLLLPPTPKRG
GKRAPVSSRTNMHILVDSGLKLLHLSLKRAKVTSSEKSSLEMLDPFVLLLLDCLNSMHVK
VTTEALVAFTWMLKFPLPAVEQNADQLTKQLFLLLKDYSKAGAARGENYQLVQNCFKAIT
ILVKNVKSNKISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLIVPEMEQLMKKV
AKLSVDGSNAMIRIHCRQIYLKYLLDYPLGKKLRGHLDFIMAQLAYEHDTGRESVLEMLA
FIFQTFPKNLLQQHNGLFFAPLALVVINDDSPRCKKMASMAIKTLLAQLDLNNQNTLFSL
VNTWMNADKVSLRRLGAQVCGLFVEVDEEKFARRLDDLLPLLERGINPDNYEDIEEEQDE
KEADRLLFSYLTLITKLSKHCGLLELSKPSDTLCRIWGHIEAHLRYPHCWVWLTASQLFG
QLFAAQQAEQLVAMWSEEEGSNSPQQASTAFIIKGLDKKIRELALSFCHQLQSKFLDTAS
GEQVIKNLLFVGKVIYLISPECDVTPPQEEAKEKEEEEQMENKDGDGEEVVDEDEQKDEE
KDEEKDEEDEDDDKDDRPLSLLWLMKKLVLMAKREAAYTPKVPLKRTCVFKFLGAIAMDL
GKERIGPYLTTVITPLYRELDSTYADQDPTLKNLAQELIELLKKKVGLEKFSLAFSSVQK
EFSVRRAARKRQRAMQAVANPDIAAKKKLKKHKNKIEAKKRKIEFLRPGYKAKKHRSHAL
KDLAMVQ
NT seq
8484 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaaatccaagtcttcgtatcacaaatctgagaacacattcaggtttctcact
tttgctgagagacttgccaatgtcaacatcgatgtcatccaccgtattgacaggactgga
tcttttgcagaggaagtagaaacatacttctctgaaggactgacaaaatggagagacctc
aacttgacagaacatttcactacgtttttgaaagaggtttccaacaagagccagtcattc
aacatgctggttttccatcagaaaacgatagtggagaccctgaaaacacacctggcagtc
aaggacagtttagcctaccagcctctactggacctggtggtgcagctggccagagacctg
cagaccgacttctaccctcatttccctgacttcttccttctgatcacctcgctgctggac
accaaggacacggaggtgctggagtgggctttcacctgcctctcctacctgtacaagtac
ttgtggaggcttatggtgaaagatatgaacaacatctacagtttgtacagcacactattg
gcacacaagaaggagcacatccgcaagtttgcagcagagagcttctctttcttgatgaga
aaggttcccgatcttgatgccctgctgactcacgtgttctcagacctgcagcagcacccc
gacaaggcggagggaacgggtcagcttctgttcgagatgtgcaaaggtgtccgaaacatg
ttccactcctgcgctgcaaatgctctccctgtagctttgcggaagctcggtcctacagcc
aatcaggaagtctctctgccgtgggacaccgtcagggatactttggatcacatgggccag
gctgcagccaatcacgtcgaaaaagaacattttctagttttgtgggagtccttgcaggtc
agagtggtggaggtccttggcgtcatggaggcaaagggagaagaggcagaacaagccaca
gaacagctggagaggctgctgttcattttccagacactggtgtcacacagggacggagcc
aaagtcaccaagccggaggccgtctgccagacggtgctgcgcctggttaagagctcggct
ctgtcggcttcctgttcccggctgcttcttcagatcatctcctctctgctgctcggggag
aacatcagcctgcccgaaacgctcatccgggagacagttcagaaggtgtttggcagcaca
atggggcaagatctgatcctagagtttaccaaggagatgttcaccatgaaacactttgaa
cagctctttctccccagcctgctgcgcttcaccaccgggttgttcggctgcggcgacccc
ctgtctcgccactacggcctggaggtgctggtcagtctgatcctcgccaaagccccaccc
cccacagacggctccatggcctttgaaacctacccacttctcttcaccggacaaattaca
ggagtgtttagtattaaggaggcgggtcaggcttcaccagagcagttggctgtgccagag
ctggtgctgtcactcatcaaacttcctgaggagcagaatcagcccatcactgatctgtcg
ctgctatgggcctcactggtgctgctgccacacctcaggcctcttgttccagctagcatt
gttcccgctgtcaccgctttcttaaaccacctgctgtgtgaaattgagacggagaatttg
gggaaagctggtctcttcgtagccacgcaggccctcagctgcctcctcaatctggacggc
tccgcccagcttctctcgctggtccccgtggacaacatcagttctatcctacgaaagttt
ccctcagacctgtcggccctgctgctaggagacctctactacacccgcctgtcactcagc
ggcgtctcagagcacctttcccacagtgcactgctggagctctaccagattctacacacc
aacctctcctccaacatctctaagatccgcctgctgactctgaggatcctctctcacttc
gaggcagagctccccccacagactgagggtgaggagaacgtggaggtgcagccggtgttc
gcggtgtgcctgcaggccgagctggtgccggcctcggtgcaggactacagagagaagctg
ctccacctccggaagatgcgacacgacctggtgcagcgcagcctgccgcaggggccgcag
ggcaccttccagcaggtgcctctgcgttacctcatcgcaatgctgttcgtcaatttcaaa
ccactgtgggacgcagtcattgaacttgttgtgagccatgccagagggatggacaacaag
gacttctggatggtctaccatgaacatctggagatggtggcaggaatagctgaaaaagaa
ctgcaggagtacgatgaagaggatgacgacgatgagtcagagtcagatcttcatggcgag
ccaggctgtgatgtcatcgagagcggggacatgggggtgctgtttttacagcagctgaag
tcgaccttcaaccccaacgagaggacggacttccccaacttccgcagcctgttgtggcgc
gccatggcccagttccccgaaagagtggaaccgcgcagccgagaactgagtcccctgctg
ctcaggtttatcaggaacgagttttacaatgctgacctgcaggtggcgcccactcaagac
ttgaggaaaaggaacgacgctaaccctgaggaatctgggatggctggagaggaagaagag
gagaaagatgaagaggagcccgaggaggaaagcaggcagcagaggaaagggcccccaagg
agagccgccgctaaacagctgattgctcatctgaaggtattcgccaaattcaccaaccct
cgctctctctgcctggaaagcagcctcagtgagctctacaaccagctgctctgccatcag
gatcatcagattcagcgagtggcactagaatgcattctcacatacaaagactccaacata
gtaccatacaaggagaatctggagaggctactggatgacaaacacttcaaagaagaaatt
gtccatttcaacatctccgaggagacagaagtgattgatgcttcccacagagccaaactc
atcccagtgctcatgaggatcctgtttggccgtctgcgcactaaagccggcagtaagttt
caggggaaggccagcgcctccaccaggtcctccatcattctgcgcttcctggcaggctgc
cacgaagaggagctgggaatgttcatcgacctgctgttggagcccgtctgccatcacagc
caaggttcctgcctggccgcggtggagagagccatagccgagacggacgtaggtgccgtc
ctgccgctgggccgacagcacagcctgctgaacgtcatccacgtggtgatccagaaactg
ggccacctcatccagatctacctgcccaaggtgctgcagatcctgctgtgtgtcaccgcc
tctgtgtccacgatcctggacagcagggaccagctgcgggcaggttgcatcagtcctctg
aagaacttgaggcgactcggcatcctgaggatccaggacttcttcgacggctttgactgc
tacagcttcaccccggacgagctggacgccgtcttccaggctgtagtctggcctcaggtg
tgtcgtctccctacagagagcccctactctcccaccccactgctgaaactcatccatgtg
tggtgcaaaaatcccagattcttccccctcctcgccaagcagaggccagaccacccagag
tgtggtgtcctcctaaacgtcttcgccctcctctctgccaagaaggcttccacagtgact
atcgccatggtaatggacatagccgaggccctagcaaccacagaagattttgtcgcctcg
gagagtgagacggagctgagcgtcaacagcagtgtgttcccacagcctaaagagggcgct
ctcatcactgcagactcaataagtcagggctccaggctgctgctgcctcacatctccacc
ctgctgcagtacctcagcagcgtcgtgcgcaacaccgacaggctcaagaagaagaagttc
agagcgcaggtggccaaggagctcaacatcctctccaaggtcagccgatttgtgagcgat
aaggagcagagttcagtgctcatcagcctgttgctgccctaccttcagaaaggcaaaaac
cttcaagagacagaaatcgacatcctggccaccatacaaaacctgctgcgtcagtgcgtg
cagcccaccaccttcctgcggccgctcagtaaactcttctccgtcattcacaacaagctg
cccagacgggccctcatcaacgtcttccagactctgtcagatctggatccttctctcaca
tacattactgatgttactacaaagcttaatgctttagacagtcgacacttggatgaaatc
cactttgacgtgagactaacagctttccaagaagccaccaggcacatcaaagacatgcag
actctggacctggacttcatcggcgccatcatacacaactgcttccacacctatgagatt
ggtgatatgtcactgggagacaacgccaccttgtttctgtccgccgtgatcacccagctg
gcagcggtcggggctggagagcagatgtacaaggacattattcagcacaccatcctggac
gctgtacacaaggggctccgcaacaaaacagagagtgtgcaacatgaatacacatgtgta
ctggcctgcctggtgaagacatttccctccaggaaagagttcagagacctggtgcagctc
actgactacaatgacctagagtctgacttttttgagcacatgaagcacatccagatccat
cgtcggggtcgtgccctgaggaagttggccaagcagctgaccgagggaacggtaatcatg
acgccccgttcccttcagaattacatcatgccgtacgccatgaccatcctgctcgacgaa
aagatgctaaagcacgagaacatgacatcagcgtcggtggaggtggtgggcgcagtgtgt
cgcaggctgacctggtccaagtacctcttctacctgaaacacttcgttcacatcctgcag
acggggcaggcggagcagaaactggctgtcagtttgctggtcacagtcctggatgctttc
catttcgaccaccagaccctcagcagagaaatggaagctgccaaggccagagatggtggg
agtgtcaagatggacgcaggtgacgaggcggaagatgcagccgaagaatccgacgcaagc
gatgatgaagaacccatggaggtagacagtaaggccgctgcctctgatgtccccatggaa
accgacaccccagataaggaaaaggatggcatctctaaagaagcggctgccagtaaaacc
gagaaacctccggctcccaaacctgtcgtagcacccagcgggctgccacagagcaaagag
gagcttgagactctgataaaggccatccaccagactgtgaatgacagcgtgctgccccgc
ctgcaaagatgtctcactgcaaaggtgaaacgtgacgaggagcacaaggcagtgaagtcg
aaggaggtgaaggacgaggaggtggcgagagtaccgatagccttcgccatggtcaaactg
atgcagactttgcctcctaacatcatggaaaccaacctgcctgggatcttgatcaaagtg
tgcgtgctgctgaggaaccgtttccaggagatccgcgatgtggctcgaggaacactggtg
aagatccttgagacgcttggaggcaaatacctgcagttcctgctcaaagagatgcagggc
atcctggtcaaaggctaccaggtccatgtcctaacattcacagtgtaccagttgatctca
gtccttactccaacactgaagagtggagaccttgacccgtgcatgaacatgctcatcgat
atcttcaacaacgaactgttcggagccgtggctgcggagaaagaggtgaaggggatcgtc
tccaagctgatggaggcaagacacagcaagagtatggactcctacgaactgctggcccaa
ttctgcagcaaggagagcatcaccaagctcatactgccactgaaggagatcctggagacg
tcggccagtctgaaggtgtgtatcagggtgactgctgtgatgcgccgactggtcctgggt
ctgctcgtcaacgacggcatgaactcccaggacatcctgctgctgagccacggcctggtc
agcgagagcctgccgctgctcaccaagagagaccgggagaaagcatcagctaagtctccc
ttagacccccgactgccacctcccagctgcctgctcctgcccccgaccccaaagagaggg
ggtaagagagctccagtcagcagccgaaccaacatgcacatcctagtggactcaggcctg
aagctgctccacttgagtctgaagagagccaaagtgacatcgtctgagaagtcttcactc
gagatgctggacccctttgtgttgctgctgctcgactgtctcaactccatgcacgtcaag
gtgaccacagaggctctggtggcattcacttggatgttaaagttccctctgccagcagta
gagcaaaacgccgaccagctgaccaagcagctttttctcctgctgaaggattactccaag
gcaggcgccgcccgcggggagaactaccagctggtccagaactgcttcaaggccatcacc
atactggttaaaaatgtgaaaagcaataagatttcagagacacagctgcaggtgttgctg
ggatatgcagaggaggacatctacgatcagtctcgccaggcgactgctttcggcctgcta
aaggcgatactctccaggaagctcatcgtaccagagatggagcagctgatgaaaaaagtg
gccaagctgtctgtggacgggagcaatgctatgattagaatccactgtcgacagatctat
ctgaagtacctcctggactacccactggggaagaagctgagagggcacctggacttcatt
atggctcagttggcatatgagcatgacacaggcagggagtctgtgctggagatgctggca
ttcatctttcagactttccctaagaacttgctgcagcagcacaacggcctgttctttgcc
ccgctggcgttggttgtgattaacgacgactcgccacgctgtaagaaaatggcctccatg
gccatcaagaccctgctggcccagctggacctgaacaaccagaacaccttgttctctctg
gtcaacacctggatgaatgcagacaaagtcagtctgcggcgtctcggagctcaggtctgt
ggtctgttcgtggaggtggatgaggagaagtttgcccgtcgcctggacgacctgctgcct
ctgctcgaaagagggatcaaccctgataactatgaagatatcgaggaggagcaggatgag
aaagaagcagaccggctgttgttcagttatctgacgctcatcaccaaactgagcaaacac
tgcggcctgctggagctcagcaagcctagcgacacactctgtcgcatctggggtcacatt
gaagcccacctgcggtaccctcactgttgggtgtggctgaccgcctcgcagctcttcggc
cagctgtttgctgcccagcaggcggagcagctggtagctatgtggagcgaagaggaaggc
agcaattcacctcagcaggcatccacggccttcatcatcaaaggcctggataagaagatc
agagagttggcgttatcgttctgccatcagctacagtccaagttcctggacacggcgtca
ggagaacaggtgatcaagaacctgctcttcgtcggcaaggttatctacctcatatccccc
gagtgtgatgtcactccccctcaagaagaagcaaaagagaaggaagaagaggagcagatg
gagaacaaagacggagatggggaggaggtagtggacgaggatgagcagaaagatgaggag
aaagatgaggagaaagatgaggaagatgaggatgatgacaaggacgaccggcctctttcc
ctgctgtggctgatgaagaagctggtactgatggcgaaaagagaggcagcgtacactccc
aaagttcccctgaagagaacatgtgtgtttaagttccttggagcgatagccatggatctg
ggaaaggaacggatcggcccctatttgacaactgtcatcactcctctgtaccgagaactg
gacagcacctatgcagaccaagaccccacgctgaagaacctggcacaagagctgatagag
ctgctaaagaaaaaagtgggactggagaaattctctctggccttctcctcagtacagaag
gagttctcagtgaggcgagcggcacgcaaacgccagcgagccatgcaggcggtggctaac
ccagacatcgctgccaagaagaaactcaagaagcacaaaaacaaaatcgaagccaaaaag
aggaagatcgagttccttcggcctggatacaaagcgaagaagcaccggagccacgctctc
aaagacctggccatggtgcagtga
DBGET
integrated database retrieval system
