Scomber scombrus (Atlantic mackerel): 134004502
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Entry
134004502 CDS
T10651
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134004502 (pdzrn4)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134004502 (pdzrn4)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
134004502 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
GRASP55_65
Motif
Other DBs
NCBI-GeneID:
134004502
NCBI-ProteinID:
XP_062299788
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Position
22:11067002..11101289
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AA seq
820 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNARDFSKVEHDEAVVEAIRRDPIVVQVIRRTPTRGT
TAVAHNYSGTPQEVCVADVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSQEKLGLTLCYRTDDEEDTAIYVS
QVEPNSIAARDGRIKQGDRILQINGCEVQDREKAVALLSSEDARSIILLVTRPEMQLEEE
VWLDDEQQQLVEELKMEILEERRKQKEHNFDRSDEHQVDEEMTTDTATCSSNNQDKDSGF
GRSSDSPEHQPLLARLHRRSPAHCLRERWRADHPHMRRGAVMSEDIQCQRTLSKGHGNEG
VVSIRNSGGILGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSVTEQGGGDGDGIDDV
EGEGGVEQELRMLNEELRNIELECQSIMQAHQLRQTHQLDPTQPASCSPVRSPKEGHRRH
SRLADIHEYPERSDSDKFREKDSSSAYNTAESARSTPLGMERSPDHSLQRHISITNQKNL
RLASATPSCPIPIPKPQSTPSRGRPADPGSVISSSPDQSNPSRSESDPALPADDERCEKK
GRTRDSRRGLPYASSYQTTPYHGQGGSRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPI
RNGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMK
MGRYWSKEERKQHLARAREQRKRREFMQKSRVECLKEGPASGAEGRKEINILELSHKKMM
KKRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaacgcgcgcgacttctccaaggtcgagcatgatgaggcagtggtggag
gccatcaggcgagaccccattgttgtccaagttatcaggcgaacccccaccagaggcacg
actgctgttgcacataactacagtggcacaccacaggaggtgtgtgtggcggacgtatgc
acgcaaacggacatcaccttcgagcacatcatggctttggcaaagctccggccagcaacc
ccaccagtccctgacatctgtcccttccttttgtctgacagctgtcattctatccacacc
atggaacatgaattttatgaatgtccagagtacctttccaatacccctgcagaagtggag
aggacggaagagtatgagtatgaggaggtggagctgtgtaggcagaacagccaggagaag
ctaggcttgacgctttgctacaggaccgatgatgaggaggacaccgccatctatgtcagc
caggtggagcctaacagcatagcagcgagagatggacgcatcaaacagggagatcgtatt
ctacagataaatggctgtgaagtgcaagacagagagaaggctgttgccttgttgtcaagt
gaagatgcaaggagcattatactactggtgacacggccggaaatgcagctggaggaagag
gtatggcttgatgatgaacaacagcagcttgtggaggaactgaagatggagatcctggag
gagaggaggaagcagaaggaacataactttgacaggagcgatgagcatcaagttgatgaa
gagatgacaacagacactgctacctgttcatccaacaatcaagacaaagatagtgggttt
ggacgcagttcagacagtccagagcaccagcccctgctggccagactacacaggaggagt
ccagcacattgccttagagaacgatggcgggcagatcatccacacatgaggagaggggct
gtaatgtcagaggacatccagtgtcaaaggacattgtccaaaggccatggcaatgaaggt
gtagtgagtattcgcaatagtggtgggatcttaggtttagagaatcgcttccagcaactt
ctggagctcaagtgtcaaatccggaatggaggcgaatgtggggtgtactccattcgacac
agtatagagtgtagtgttacagagcagggaggaggggatggagatggcatagatgatgta
gaaggagaaggaggagtggagcaagagttgaggatgctaaatgaggaattgcgcaacatt
gagctggagtgccagagcatcatgcaggcccatcagctccgccagacccaccagctggac
cccacacagcctgcatcctgttcaccagtacggagccccaaggaaggacacaggcggcac
agcaggctggccgacattcatgaatatccggagaggtcagacagcgataagttccgagaa
aaggacagctccagtgcctataacacagcggagagtgcacggtcaacaccactaggtatg
gagagatctcctgaccactcactgcagagacacatcagcatcaccaaccagaaaaacctc
agactggcatcagccacaccctcctgccccatacctatccccaagccccagagtacaccc
agccgtggcagaccagcagacccaggctctgttatctccagcagcccagaccagagtaac
ccttcccggtctgagtcagaccctgccctgcctgcagacgatgagagatgtgagaaaaaa
gggaggaccagagattcaagaagagggcttccctatgcctcctcataccaaacaacccca
tatcatggccagggaggatccaggcaacttcagagctacatgcagctgctacaacagcac
tcatcccttgagtattcccagagccagctgagtctgctcagtgtctgtcgagatcccatc
cgtaatggccgccctggggaaccacgtctagagtggaaggtcaaggttcgcgctgacggc
acacgctatgtggcccggaggcctgctcgcgaccgcatcctgagggagcgggcactaaga
attagagaagagagaagcggaggtatgactacagatgacgatgctatgagtgagatgaag
atgggccgttactggagcaaagaggagaggaagcagcacttggcacgagccagggagcaa
aggaagaggagggagttcatgcagaagagccgtgttgagtgtctcaaggagggacctgcc
agcggagccgagggcaggaaggagataaacattttggagcttagtcacaaaaagatgatg
aagaaacgtaacaaaaagatcctggacaactggatgaccatccaggagttgatgagccat
ggggccagagtccctgagggctcaaaagtacataacgccttcctttctgtcacaactgtc
tag
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integrated database retrieval system
