Scomber scombrus (Atlantic mackerel): 134004700
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Entry
134004700 CDS
T10651
Symbol
dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134004700 (dcp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134004700 (dcp1b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134004700 (dcp1b)
mRNA degradation factors
5'-3' decay
Decapping complex
134004700 (dcp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
134004700
NCBI-ProteinID:
XP_062300049
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Position
22:complement(19455098..19468580)
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AA seq
647 aa
AA seq
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MTATSAGSFLAAKGLDISLAALQRQDPYINNIVDVASQVALYTYNNRTNEWEKTEVEGTL
FIYTRLASPRHGFTIMNRLSMQNLTEPITKDLDFQLQDPFLLYRNARLVIHGIWFYDKQD
CQRIAQRMTILTQQEQVLAQSQGGWLSPGGGGGGVGVGGGGVKGRGGGGGVGRGRGGSEG
KGVDIIQMLTKAHTEYDKEKSTSEPKEIGGSSVLYGNPNLIKPIPVKPNTQDGDGAEPKP
LSLATLFGSQHHHSPKPEPVSPLAAPGSGSSTGKVARPPVARTLTYDTTLGSGRGVAPGC
SDGGNIVAGGLQSSAAAHQQQQQQHCPAIQKLMHAQRDAGGVVGVLQTVSESPENRLCDN
GVPLEQHHLHHHLYHHHQQHHHHLHHHQQQQLQPDPIQRLFQSHPPPPTSTSFSAAPPCC
SIPLPLQKNPLLSGQPIVVDSVPCSHLQVQQSQQLFFSLPMPQSEAQHNNQSASTLQATG
LLPSQVSNDQVLQPTQGLSSHMPGVVSPHELLQKLQLVQQEQNLASQDPPRLCPGLAPRF
LGPTQSQVAGSILGPASNQITAGQKAALQFQVISPQRIPATVAPTMLLSPSVFTQSKSSP
LQKEIRVLSKNQLQATLLHLIQTDSSFLDTIYEAYISRFANDSSSKY
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgacttctgcaggcagctttctcgctgctaaaggactggacataagtctggca
gctctacagcgacaagacccatacattaataacattgtggacgtggcaagccaagtcgct
ctgtatacttacaacaacaggacaaatgagtgggaaaagacagaagtggaaggtacccta
tttatctacacaaggctggcgtctcccagacatggtttcactattatgaacagactcagc
atgcagaaccttaccgagccgatcaccaaagacttggacttccaactccaggaccccttc
ctgctttatcgcaatgcacggctggttatccatgggatttggttctacgataagcaggac
tgtcaacgcattgcccagaggatgacaattttgactcagcaggagcaggtcctggctcag
tctcagggtggttggctgtccccaggaggaggaggaggtggtgtaggtgtaggaggagga
ggagtaaaaggaagaggaggaggaggaggagtaggaagaggaagaggaggaagtgaaggg
aagggagtagacatcatccagatgctgaccaaagcacacacagagtatgacaaggagaag
tctacttcagagccaaaggagattggcggcagcagtgttctttatggaaaccccaacctg
atcaaaccaatacctgttaaaccaaacactcaggacggtgatggtgctgagcccaagcct
ctctctctggccactctgttcggctctcagcatcatcactcacctaaacctgagccggtc
tctccattggctgcccctgggtcggggtcatcaacggggaaagtagcccgcccgcccgta
gcccgtacactgacctatgataccacattgggatctggccgaggtgttgcaccggggtgt
tcagatggtggaaatattgttgcaggcgggctgcagagttcagctgctgcccatcagcaa
cagcaacagcagcactgccccgccatccagaagctcatgcatgcacagagagacgccggg
ggggtcgtcggagttcttcagactgtgtccgaatccccggagaacaggctatgtgacaac
ggggtgccactggagcagcatcacctccaccatcatctttaccaccatcatcagcagcac
catcatcatcttcatcaccatcaacagcaacagcttcaacccgacccgatccagagactt
ttccaaagccacccacctcctcccacctccacctccttctctgctgcccctccttgttgt
tccatcccccttcctctgcagaagaacccccttctctccggccagcccatagttgtggat
tctgtgccatgttcccaccttcaagtgcaacaaagtcagcagctgtttttcagcctacct
atgcctcaatcagaagcccagcacaacaaccaatcagcttcaactttacaggcaacaggt
ttgctgccatctcaggtgtccaatgaccaagttcttcaacctacacaagggctgtcttcc
catatgccaggtgtggtatcaccccatgaactgctccaaaagctccagctggtccaacaa
gagcaaaacctggcttcccaggatccccctcggctctgcccagggctggcccctcgattc
ctggggcccactcaaagtcaagttgcaggctcaattctaggtccagcctcaaaccagatt
acagcaggtcaaaaggctgcgctgcagtttcaggtcatctccccccagcggataccagca
accgtggccccaaccatgctcctttctccgagtgtattcactcagtcgaaatcttctccg
ctgcagaaggagatcagagttctgtctaaaaaccagctccaagccactctgctacatctg
atccagactgacagctcattcctggacaccatctatgaagcttacatcagccgctttgct
aacgactccagcagcaagtactga
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