Scomber scombrus (Atlantic mackerel): 134005404
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Entry
134005404 CDS
T10651
Symbol
dennd4c
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134005404 (dennd4c)
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
134005404 (dennd4c)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
DUF2464
PPR_2
PPR_3
PPR
PPR_long
Motif
Other DBs
NCBI-GeneID:
134005404
NCBI-ProteinID:
XP_062300270
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All DBs
Position
23:complement(15715974..15751614)
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AA seq
1921 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINRSAGETVPEGFT
CIDSTYSGQPANLNHGSLKSPELFLCYRRARGKAPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITFRRAPPVQPQNSLAVTDICVIVTNKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSASNSISYKAGLIFRYPEEDYESFPLSESVPLFCLPMGAKIEC
WAPNTRDPLPVFSTFVLTISSGEKVYGSAIQFYEPYQVDLLSEKQKIQLGLLTTVEKKMI
PNRPVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHSVSFPSPQ
RPRILVQLSAHDTLILSQPVCTPLPLSGADYSTLLMNLGSENCATVLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKRHSNWKNLPKKPCKSLINSLSNLHHQLATVSVRQTTQEESAV
DMTPIEADFTWHKKKTALEMEIQEAFLRFMASILKGYRSYLKPITEAPSEKATAADSLYD
LQGFLKSRDRAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCVEKLFPSDKITD
KGTKVEGESSEDTRLLELDESQKSEHTVFVMPPEPPVESGSEPSARYTYKSFPRLQMELF
DRPRELRPAISTRAAGASLSSSPALLAKRTKQEIKLAYKMAKRFYSNPQLWSRCLFSHCY
SLWFICLPAGVRLAKSKSRAMHQAYNVLLKMRTTEVEVLDEVCYRVVMQLCGVWGLPVMA
VRVLVEMKKAGVHPNAITYGYYNKAVLESPWPSRNRSGQFMWTKLRNVLRGVGQFKQALD
RTSSKKEPANSTTAASIGGSSVTDADRLSHGSADSSNEVNGEEHNLFAHSHNMGDSTDNH
CSTGRQYDQGYGSKDELHQELAEPSHVLSTDNTNTVKAQRNGGDISSSVDSAVAVAEPPS
PVDVPSPVPSIVKLSTGSFDAGRETGAGKLFRRQSNNEDVSLPDDNASVASVDVANKPQQ
QRQKAFAERSCSFSAETRAGMLLEKGVDHMASQMGADARILTAALSAGQSPTSNIVPKAL
FKDLEEEPEDDQGLTLGKLSEEVPEEGKGLDKEAKENEVKIEKRERKMTETQDDESGVRG
VTLERADVEAGADPLSILVSETEESASVNSQEPPRTVPAVVSRNLAEEIEMYMSLKHPMG
AKSSSMELQQAQGDSIDAPQPKQTIERRSSLPVPPVKTPIGSPGDTPKRSPSTVTRSKTF
AVKTKTSGSTSASPGPRSSSLTALVKSSQGGSLGSVINTISGIKMDTLLSGPKIDVLKSS
MKQAANVASKVWGAVASAYAYSDDEDEQGQGGCGFPAHLDEHMLAAHDIDDSPDRGAIPG
LVANGLNQSCTSLGSSSGSSDTGRGTHQTHPTPGRAGRGPDSEQGSSLHASSSSIYQNCA
LEVLMSSCSQCRSCEALVYDEEIMAGWTADDSNLNTNCPFCRTAFLPLLHIEFHDLRTMT
GFYMNPSASGDSIHSTSTQPTPTSSADIKTPDLICFPEEESRETTDNNAGAQNSLIPEPV
QSDPLGLLEHQAAGKQQKGSGTSLTRSNSVGGPLQSLDSSQRPGHGVSTTSLPCSLQEVS
DGMGTKRPNPKPVSVPYLSPLVLRKELETLLENEGDQVIYTHKFLSQHPIIFWNLVLYFR
RLDLPTHLPGLILNSEHCNNGVQLPLTSLSQDSKQVYVQLLWDNINLHKEPEEPLYLLWR
TFMEKKGTLAPTDHQEIRTLLNTIVRNIQTNDVYGPINLLIREIKQRPEGVKRQRSIYRE
ILFLSLVALGRENIDVEAFDREYRQAYDELSAEQLKWLHRMDRPPSPSIQWCLKCFGPLV
I
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgattgaggacaagggtcaccgtgtgactgactactttgtggtggccgggctgacagac
aagtccacgccattggagcaggacctgtcagagaccaagtccagcgggcccaaagcgccc
atcactgaccttgccgtcattaacaggtcggctggggaaacagtgcctgagggcttcacc
tgcatcgacagcacctacagcggccagccagccaaccttaatcatggcagtctgaagagc
cccgagctctttctgtgttacagaagagctcgagggaaggctcctctcattgacattggt
gtgctgtacgagggtaaggagcgtttgatccagggctgcgaggtcatccaggccacgccg
tacggccgctgcgccaatgtcaacaacagctctgccacctcgcagcgcatcttcatcacc
ttccgccgcgcgccacccgtccagcctcagaattccctggcagtgacggacatctgtgtc
atcgtcaccaacaaaggcgagacgccaccacataccttttgcaaggtggacaagaacctc
aactgtggcatgtggggctcaagcgtgtttctgtgttataagaagtcagtatctgcgtcc
aattctatcagttacaaagctggtctcatctttcgttacccagaggaggactatgagtct
tttccattgtcagagtctgtgcctctgttttgtctgcccatgggcgccaagatcgaatgt
tgggcaccaaacacacgtgaccctctgcctgtcttctccacgttcgtcttaaccatctct
tctggtgaaaaggtgtatggatcagccatccagttctatgaaccataccaagtggatctt
ttgagtgagaagcagaagatccagctcggcctgctcaccacagtggagaaaaagatgatc
ccaaaccggcctgtaaacaccaataaatgcatctgcctcctctcccgctggcccttcttt
gagtccttccgcaagttcttaatgttcctctacaagctgtccgtctcaggcccgcaccca
ctgcctattgaaaagcacatctcgcacttcatgcacagtgtgtcatttccttctcctcaa
aggcctagaatcttggtccagctctcagcacatgacacgttgatcctctcccagcctgtg
tgtacacctttacccctcagtggggcggactacagcactctgctgatgaatctgggctca
gagaactgcgccacggtgctgcactttgtactgctggagagcaagatcctgttgcactcg
ctgaggcccgctgtgctcactggagtggccgaggctgtggtggctatgatcttccccttc
cagtggcagtgtccatacatccccctgtgcccgctctctctagcaggcgtcctcaatgcc
ccatgtccgtttatagttggtgtggactcccgctacttcgacctttacgaccccccacca
gatgttgtctgtgtggatctggacaccaacactatctacctgtctgatgagaagagacac
agcaactggaagaacctcccaaagaaaccctgcaagagcctcattaactcactaagcaac
ttgcaccaccagctggccacagtttcagtgcgtcaaaccacacaagaagagtcagcagtg
gacatgacccccatcgaggcagacttcacatggcacaagaagaagacggccctggagatg
gaaatccaggaagcgttccttcgcttcatggcatccatcctgaagggctaccgctcctac
ctcaaacccatcaccgaggcaccatctgagaaggccacggcagcagactctctttatgac
ctgcaagggtttctaaaaagcagagaccgtgcccaccagaagttctactcccagctcacc
aagacccagatcttcatccgcttcatcgaggagtgcacctttgtcagtgacaaggacacg
ggtttggccttttttgacgactgcgtcgagaagctttttccctctgataaaatcaccgac
aagggcacaaaggttgaaggagaatcatctgaggatacgagactgttggagctggacgag
tcccagaagagtgagcacaccgtctttgtcatgcctcctgaacctccagttgaaagcgga
tctgaaccctctgccagatacacctataaaagtttccccaggctgcagatggagctattt
gaccgtcccagggagttacggccagcaattagcaccagagcagcaggggccagtctgtcc
agcagccctgcactactggctaagaggacaaagcaggaaatcaagctagcatacaaaatg
gcgaagcgtttctactccaaccctcagctgtggtcccgttgtctgttcagtcactgctac
agcctgtggttcatctgcctgccagcaggtgtaagactggccaagtctaaaagcagagcc
atgcatcaggcatacaacgtcctcttaaagatgaggaccactgaggtggaggtgctggat
gaggtgtgttacagagtggtgatgcagctctgtggtgtttggggtcttcctgtcatggct
gtgcgagtcctggttgagatgaagaaagctggagttcatcccaatgccatcacatatggc
tactacaacaaggcggtcttagaaagcccctggcccagccgaaaccgcagcggccaattt
atgtggaccaagcttcgtaatgtgctgcgtggagtgggccagttcaagcaagctctagac
cgtacatcttccaaaaaggaaccagcaaattctaccacagctgcatcaataggtgggtca
tcagtcactgacgctgaccgtttgagtcatggaagtgcagacagctcaaatgaagtcaac
ggtgaggaacataacctatttgcccacagccacaacatgggagactcaacagacaaccac
tgtagtacaggcagacagtatgatcaaggctacggctccaaggatgagttacatcaggag
ctggcagagccttcacacgtcctttccactgacaacacaaacactgtcaaagcacaacgt
aatggaggtgacatttccagctcagtggacagtgcggtagctgtagcagagcccccaagt
cctgttgatgtgccctcgcctgttcctagtattgtgaagctgtccacagggagctttgat
gctggcagggaaacaggtgcaggaaagctgttcaggaggcagagcaacaatgaagatgtg
tctctacctgatgataatgcttcagtggcttctgtggatgtagctaacaagcctcaacag
cagcggcagaaagcctttgctgaacgcagctgtagcttcagcgctgaaacccgagctgga
atgcttttggagaaaggcgtggaccacatggccagccagatgggcgctgatgcccgtatt
ctgactgcagcgctctctgcaggtcaaagtccaacatctaacattgtgcccaaagcactt
tttaaagacctggaagaagaaccagaagacgatcagggcttgacactggggaagctgtca
gaggaagtaccagaagaaggaaagggacttgataaagaggcgaaggagaatgaggtgaaa
atagagaaacgagagaggaagatgactgaaacacaggatgatgagtctggagtgcgggga
gtgaccctcgagagggcggatgtggaggcgggtgccgatccgctctctatcctggtttca
gagactgaagagtctgcctcagttaacagccaggagcctccacgcaccgtgcctgctgta
gtgtcccgcaacctggcagaggaaattgaaatgtacatgagtcttaaacaccccatgggt
gctaagtcctccagcatggagctccagcaggcacagggagactccattgacgccccacag
cccaaacagaccatagagcggcggtccagcctccctgtgcctcctgttaaaactccaatt
ggctccccaggagacacacccaaacgcagccccagcaccgtcactcgctccaagacgttt
gccgtaaagacaaagacatcaggcagcacatcggctagcccaggtcctagatcgtcctca
ctgacggcgctggtcaagtcctcccagggagggtcgctgggctccgtcattaacaccatt
tcaggcatcaagatggacaccctgttgtctgggcctaaaattgatgtgcttaagtcaagc
atgaagcaggcagcaaatgtcgctagcaaagtgtggggggcagttgcttcagcatacgcc
tactcagatgatgaggatgaacaaggtcagggtggctgtggcttcccagcccatctggat
gaacacatgctggcagcacatgacatcgacgacagtcctgatagaggagccatcccaggg
ttggtggccaacggactgaaccagagctgcaccagcctgggcagtagcagtggcagcagc
gacacaggccgagggacacaccagacacatccaactccggggcgagcaggcaggggtcct
gactctgagcaaggctcctcacttcatgcctcctcctccagcatctaccagaactgtgca
ctggaggtgctgatgtccagttgctctcagtgccgctcctgtgaagcgctggtgtacgat
gaagagatcatggcaggttggacagccgacgactccaatctcaataccaactgtcctttc
tgtcgcacagccttccttcccttgttgcacattgagtttcatgacttgcggacgatgacc
gggttctatatgaatcccagtgcctcaggagacagtatccacagcaccagtacccagccc
acccctaccagttcggctgacattaagacgccagaccttatctgtttccctgaagaggaa
tcaagggagactacagataataatgctggagcacaaaatagtctgattccagagccagtg
cagtcggaccccctgggtctactggagcaccaggctgcagggaagcagcagaaaggtagt
gggacgtcactgacacgcagcaacagtgttggaggcccactgcagagcctggactcctcc
cagagacctggtcatggtgtctcaactaccagcctgccctgcagcctgcaggaagtgtcg
gatggaatgggaaccaaacgaccaaaccccaagcctgtgtccgtaccgtacctcagccct
ttggtgctgcgcaaggagctggagaccctactggagaatgagggagatcaggtgatctac
acccacaaattcctcagccagcaccccatcatcttctggaacctggtgttgtatttccgc
cgccttgacctgccaactcacctgcctggactcatcctcaactctgaacactgcaacaac
ggagtgcagctgcccctgacgtcgttgtcccaggacagtaagcaggtgtacgtccagctc
ctgtgggacaacatcaacctgcacaaggaaccggaagaacccctctacctactctggagg
acctttatggaaaagaaggggacattggctccaacagaccatcaggagattcgtacgctt
ctcaacacaattgttcgcaacatccagaccaacgacgtctacgggccaatcaacttgctg
atccgagagatcaaacagcgccctgagggggtcaaacgtcagaggagtatttatagggaa
atattattcctctcactggtggctttgggacgggagaacatcgacgtagaggcttttgac
agggagtaccgccaggcctacgatgaacttagtgcagagcaactcaagtggctgcaccgc
atggatcgcccgcccagccccagcatccagtggtgccttaaatgctttggaccccttgtt
atctga
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integrated database retrieval system
