Scomber scombrus (Atlantic mackerel): 134005411
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Entry
134005411 CDS
T10651
Symbol
gigyf1a
Name
(RefSeq) GRB10-interacting GYF protein 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134005411 (gigyf1a)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134005411 (gigyf1a)
Surveillance factors
Other surveillance factors
134005411 (gigyf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
Motif
Other DBs
NCBI-GeneID:
134005411
NCBI-ProteinID:
XP_062300277
LinkDB
All DBs
Position
23:complement(17891683..17917263)
Genome browser
AA seq
1092 aa
AA seq
DB search
MTAETLNFGPEWLRALSSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYIKDNKVPEDM
QDKEFAAILQDEPMQPLALVPLTEEEQRNFSMSVNSVAVLRLMGKGVGGAAPAGVVRGRG
ATRGGRGRGRGEGGFYQRSIEEAEVGFGRSVREIHRSQSWDDRGERRFEKPLRREVVRPG
FEETGGPGGPGRKEFTRADSDNWRTLREEQEEEEGGEPGTNWRLAGPRRDDGGPRSAGWR
DHSGPGESRRRKFDFDFRDSDGHGGSGRRRAGSEGLEDDRDGLPEWCTDEEDGEMGTFDS
SGAFMTMKKSGKETILEEEFEFKGIEEEEEEESFADMERNSADGDKDKESKEAGSAYIDG
ETKPASPSTSPPIHCTPPSLELPGGPMVDNTHLSNSHPAKACTTICEDAAPVGGSKAQLS
PSVSTSSTLPPPPPSSAAPLLPLSGGDTEDDEGMKHLQQEAEKMVASLQDTSLEEECFTQ
TLQQESRNTAAALPLSHEAAMKWFYKDPQGEIQGPFTTVEMCEWFQAGYFTMTLLVKRGC
DEGFQPLGDVIKMWGRVPFAPGPSPPPLLVRQPPPTQRPQPTRGPAGTVSQSTANIEDGK
GRMQRRGKIDRQVTGNLDQDRLKKQQELAAAALYQQLQQQQLFQLINRCSEQGMMPSMNR
SMSVPDTGSMWDMHTSASQPSGGEASLWDITMNPSTQGPTLEQLQKLQQERRDAELRAKR
EEEEQRKRREEKRRQQEEQKRRDEEDLFRRKQQCRQQQELIMKLLQQAPQQQGPGASSSS
WSGASSSGLTKSGKTQAMALLEMQQEAERLLKQQQQQQRAQQQRERHSGMSMGSSSMGGQ
WADGVGMWGGPGGMEGKGGSGSSSGSMGMWDEAVKNQASLRGNSNNNMGLKSSRSSPSLS
DQYMMRRKRTEEEEKLLKLLQGMKPQDGFTTWCEQMLHALNTSANNSSSSLDVATIVAYL
KEVESPYAVLDFIRSYLGDTVEAKEFAKQFLERRAKQKANQQRQQQQLSKEVAGLNMNFP
LQDSMRGMNPSTLQSMFQANHMGKAGLYDNQGGKMKKKQPMMLHSDPSILGYSFHNAGDC
LSLNEMEMVEDY
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgagactcttaacttcggcccagaatggctccgtgcactgtccagtgggggg
agtgtgacatccccccctccttcccccgccatgccaaagtacaagctggccgagtatcgc
tacggccgagaggagatgttagcactttatatcaaagacaacaaggtcccagaagacatg
caggataaggagtttgctgctattctgcaagatgagcccatgcagccactggcactggtg
cctctcactgaggaggagcagaggaacttctccatgtctgtgaacagtgtggcggtgctg
aggctcatgggaaaaggggtgggtggggctgccccggccggagtggtgcgaggacgaggg
gccacacgaggcggtcgaggccgaggccgtggtgaaggtggattctaccaaagaagtatt
gaagaagcggaggttggttttggccgcagcgtccgagagatacatcgcagccagagctgg
gatgaccggggtgagcgtcgattcgagaagccgctacggcgggaggtggtgcgtcctggc
tttgaggagactggaggtcccgggggcccagggaggaaggagtttacaagggctgacagc
gataattggcgcactctccgcgaggagcaggaggaggaagaggggggggagccgggcacc
aactggagactcgctggaccccgcagggatgatggtggtcctcgctcagcaggctggcgg
gaccacagtggtccaggagagagccgtcgaaggaagttcgatttcgacttccgggactct
gacggtcacggtggtagcggccgccggcgcgcaggcagcgagggactagaggatgacagg
gacggcctgcccgagtggtgtacagatgaggaagacggggagatgggcacttttgactcc
tctggagctttcatgactatgaagaagagcggaaaggagacaatcctggaggaagagttt
gagtttaaggggatagaggaggaggaagaggaggagagcttcgctgacatggagaggaac
agtgctgacggagacaaagacaaagagagtaaagaagccggctctgcttacattgatggg
gagacaaagccagcatcaccctccacctctccccctatccactgtacccctccatccctg
gagctcccaggaggcccaatggtggacaacactcatctgagcaacagccaccctgctaag
gcttgcactacaatttgtgaagacgcggctccggtagggggctccaaggcccagctgagc
cccagcgtctccacttcctccactctgcctcccccacccccttcctctgctgctcctctc
ctcccactgtctggaggagacaccgaggacgacgagggcatgaagcacctgcagcaggag
gcagaaaaaatggtggcatcacttcaggacacttctttggaggaggagtgtttcacccag
actctgcagcaggagagcaggaacacagcagccgctctgccgctgtctcacgaggccgcc
atgaagtggttctacaaggacccacagggagagatccagggtccattcaccactgtggag
atgtgcgaatggttccaggcaggctacttcaccatgaccctattggtgaagcggggctgc
gacgagggcttccaacccctgggggacgtcataaagatgtggggccgcgtaccgttcgcc
ccagggccctccccgccgcccctgctggtgagacagccaccaccaacgcagcgcccgcag
cccacccgggggcccgctgggactgtgagtcagagcacagccaacatagaggatgggaag
gggaggatgcagaggagaggaaagattgatagacaggtcacgggaaatctggaccaggac
cgcctgaaaaagcagcaggagctggcagcggcagctctttatcagcagctccaacagcag
cagctattccagctcattaacaggtgcagtgagcagggtatgatgccttcgatgaacagg
tcgatgtcagtgccagatacagggtccatgtgggacatgcatacctcagcttcacagccg
tcaggcggtgaagccagtctttgggacataacaatgaatccttctactcagggtccaact
ctcgaacagcttcaaaagctccagcaggagaggcgagacgctgaactcagggcgaagcgt
gaggaggaggagcagcgcaagaggagggaggagaagaggaggcaacaggaggagcaaaag
aggagggacgaggaggatctcttcagacgcaagcagcagtgtcgtcagcagcaggaactg
atcatgaagttgctgcagcaggccccccaacagcaggggcctggggcaagcagctcaagc
tggagcggggcctcctcctccgggctcaccaagtcaggaaagacccaggctatggctcta
ctggaaatgcagcaggaggccgaaaggctgctgaaacagcagcagcaacaacagagagcc
cagcagcagagagaacgccactccggcatgtcgatggggagttcttccatgggaggtcag
tgggcggatggcgtcggcatgtggggcggtcctggaggcatggagggtaagggtggcagc
ggaagctcttcaggcagcatgggcatgtgggacgaggctgtgaagaaccaggccagcctg
cgtggcaacagcaacaacaacatgggtttgaagagcagccgcagcagcccatcactcagt
gatcagtacatgatgcgtcggaagcggacggaggaggaggagaagctgctgaagctgttg
cagggcatgaagcctcaggacggcttcaccacctggtgtgaacagatgctgcacgctctc
aacacctctgccaacaactcctcttcctctctggatgttgcaacaattgtggcatacctg
aaggaggtggagtctccctatgcagtgctggacttcatccggtcctacctaggggacaca
gtggaagccaaagagttcgccaaacagtttctggagcgacgtgccaaacagaaagccaac
caacagagacagcagcagcagttatcaaaggaagtggctggattgaacatgaacttccct
ctgcaggactcaatgcgaggtatgaatccaagcaccctgcagtccatgtttcaagccaac
cacatgggcaaggctggtctctatgacaaccaggggggaaagatgaagaagaaacagccc
atgatgctgcactctgaccccagcatcttagggtactcattccacaacgcgggcgactgt
ctgagcctgaatgagatggagatggtggaggattactga
DBGET
integrated database retrieval system
