Scomber scombrus (Atlantic mackerel): 134005452
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Entry
134005452 CDS
T10651
Symbol
sf1
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134005452 (sf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
134005452 (sf1)
Spliceosome [BR:
ssco03041
]
Complex A
Other components
Complex A specific factors
134005452 (sf1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
134005452
NCBI-ProteinID:
XP_062300335
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All DBs
Position
23:complement(22337918..22351845)
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AA seq
678 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFDAGPGAGNGLMPTPGPPAAFPSIQAFQPAMPNASFPQ
SHQFNAVAGFVAPTPQQPVVAAGLAKPDFGQKKNRKKSRWSSETPDQKTVIPGMPTVIPP
GLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTR
KKIEEERHSLITEMVGLNPDFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGN
TLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQI
RNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQNTEPRSITNTTLCTKC
GGAGHISSDCKYTSSFAAHRATGGEPPQSAQDKARMDKEYLSLMAELGEAPVPSSGGGHS
NNQGGGPRSSGPNNNQPPPQNRPPWMNSGQENRNYHSMHGGPGGHGGPHNYPPPMPNMGG
PPMPPNPNGLPPPWMQPPPPPMGQGPGPHGHPMGLLPPPMGMMPPPPPPPSSQPPPPPSG
PLPPWQQQAPPPPPTSSMATSTPLPWQQNTVTTSSPGTATLPPWQQPQQTAASGAQPPPP
MGTPSMVPPPPGVQPPLPPGAPPPPPPPPPGSTGMMYAPPPPPPPMDPSNFVTMMGMGVP
GMPPFGMPPAPPPPPPQN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccacaggagcaaatgcaactcctttagggaagttgcaccccagcatcggagctaaa
cgaggatttgacgccgggcctggtgcgggtaacgggctgatgccaacgccggggccgcct
gcagctttcccatcgatacaagcttttcagcccgcgatgccaaacgcatcttttccgcag
tcacatcagttcaatgcagtggcaggttttgtggccccgactccacaacaaccagtggta
gcggctggactggccaaaccagattttggtcagaagaaaaatagaaagaaaagtcgctgg
agcagtgagacgcctgatcagaagacagtcataccgggcatgcccactgtcattcctcct
ggactgacccgggatcaagagagagcctatatagtccaactgcagattgaagacctgact
cgtaaactgcgtacaggagacctgggaatccctgttaaccctgaggacaggtctccatct
cccgagcccatatacaacagcgagggcaagaggttaaacacacgcgagtatcgtacgcgg
aagaagatcgaggaggaacgtcactccctcatcacagagatggttggactcaaccccgac
ttcaaacctcctgcagactacaagcctccagccaccagagttaatgacaaagtcatgatt
ccccaagatgaatatcccgagatcaactttgttggtctgctcattggaccacgtggtaac
acactgaagaacatcgagaaagaatgctgcgccaagatcatgatccgcggtaaaggttcc
gtgaaagaggggaaggtcggccgaaaggatggacagatgctgccgggcgaggacgagcct
ctgcacgctctggtcaccgccaacaccatggagaatgtcaagaaagctgtggagcagatt
cgtaacatcctgaaacaaggcatcgagacgccagaggatcagaatgatctacgtaagatg
cagctgagggagctggccagactcaatggcacattgagagaagatgacaacaggatcctt
cgtccctggcagaacactgagccccgcagcattactaacaccaccctctgtaccaaatgt
ggtggagcaggccacatctcgtctgactgcaaatacaccagctcattcgctgcccacaga
gcaactggtggcgagccgcctcagtcggcccaggacaaggctcgtatggacaaggagtat
ctgtccctcatggctgagctgggggaggctccggtcccctcatcaggtggaggacactcc
aacaaccagggaggaggtcctcggtcctcaggacccaacaataaccagccaccaccgcag
aaccggcctccttggatgaactctggtcaggagaacaggaactaccatagcatgcacgga
ggccccggcggccacggaggaccccacaactaccctccccccatgcccaacatgggaggc
cctcctatgccccccaaccccaatggcctgcctcccccctggatgcagccccctcctccc
cccatgggccagggtccaggacctcacggacaccccatgggtctgctgccacctccaatg
ggtatgatgccacctccaccccctccccccagcagtcagccaccacctcccccttctgga
cccctgccaccatggcagcagcaggctccacctccccctccaaccagcagcatggcaacc
agcacaccactgccctggcaacagaatactgtcaccacatccagtcctggcaccgccacc
ctgcctccatggcagcagccccagcagactgcagcctccggagcccagcccccacctccg
atgggtaccccatccatggtgccgcctccccccggagtccagcccccattgccccccggc
gcccctccacctccacctccaccacctccaggctcaaccggcatgatgtacgccccaccg
ccacccccgccaccaatggacccttccaacttcgtcaccatgatggggatgggggtgcca
ggcatgccccccttcggcatgccccccgcccccccacctcccccaccccagaattaa
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