Scomber scombrus (Atlantic mackerel): 134005493
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Entry
134005493 CDS
T10651
Symbol
itga7
Name
(RefSeq) integrin alpha-7
KO
K06583
integrin alpha 7
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134005493 (itga7)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134005493 (itga7)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134005493 (itga7)
04810 Regulation of actin cytoskeleton
134005493 (itga7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
134005493 (itga7)
04515 Cell adhesion molecules [BR:
ssco04515
]
134005493 (itga7)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
134005493 (itga7)
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin alpha subunits
134005493 (itga7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
134005493
NCBI-ProteinID:
XP_062300406
LinkDB
All DBs
Position
3:22033913..22076670
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AA seq
1162 aa
AA seq
DB search
MTAPEGHGNTVSLSSYSSHRWTYLLWALLTISSQVWGFNLDTTHTLHKFGDRGTFFGFSL
ALHQQLTPEPQSWILVGAPQAAGQGLLLGSRPGALFRCPITPEEYDCERVDIDGDVSLDR
ESKDNQWLGVTVKSQGIGGKVVTCAHLYELRQRVSQTSETRDPIGRCYVLSEDLTERDDL
DGGEWKFCEGRPQGHEQFGFCQQGLSVSFTPDNNFILFGAPGTYNWKGEMRVQLLNQTLL
DLGFYDDGPYEVADQKQLNAQLIPLPYHSYLGLLFMASPVEDALLYKTLEPSNRPTPFED
VAHNSYLGFSVDSAMGIMSLGELTFVAGAPRANHTGAVVLLRKDNVYRLVPQHIFWGEEL
ASSFGYSVATADLNRDGWTDLIVGAPNFFDRKAEIGGAVYVYLNPLGHWDDQARPIRLNG
TYDSMFGMTVSNVGDLDQDGYGDIAVGAPFDGDGKVYIYRGSDAGIETKPAQVLDGRDFD
VRRFGYSISGSLDIDNNHYPDLAVGSLNDSVVLFRSRPVIHVVREITVDPQHIDLEQHNC
KGREGVCVEVKACFTFTAHPKNYSPHITLVVLFEADTERRKLGLPHRVNFLGRRPLEPEY
TQTEEVELHHQRHPVCTTAVFQLHENIRDKLRPISLAITHTIKPVPPRRHSATKKLEKLA
PVLSVSPSNTLHSEVNFLREGCGTDKICQSNLKLSYQFGTRPLTSDLFTPLPKDEDDVQV
FSLSDQRLVVLEITVTNMPSNPLEPDEDGDDAHAAQLLINLPSTLSYAGSRIPSQMRCQA
NQNGSQVECDLGNPMKRDTKLKFSINLSTSNITIETTELTADLVLTTISEQLDLAPVTAF
AKVVIELPLSVSGLARPHQLFFSGAVKGESAMTSLEDIGSPVDFEFVVANPGQALNTLGS
AFLNIMWPHELANGKWLLYPSSLKFEGHPNTLCTPMGVLNPLKLYSSAPTEPPPPVTQMP
VRQRRSYPEDEGQVMTKGSVGRTTPAVAASDRRKSLKLDCLLGSARCVLLQCPLHSFSGQ
AILKIHAWLWNSSFIEEFPAVSALELLVRANITVKSSIKHLILKDAAAQVPVMIYPEPGL
ADQYWIPWWIIIIAILAGILLLTVLVCILWKCGFFQRAHYKDKLPQYHAVKIPREDRPQF
QTEKSGVVHKKEWATHWSDGTS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacagccccggagggacatgggaacactgtctccctctcatcttattcctctcatcgt
tggacttacctcctctgggctctgttgactatttcaagccaggtctggggctttaacctg
gatactactcacacactgcacaagtttggggaccgaggcaccttttttgggttctctctt
gcacttcaccaacagcttaccccagagcctcagagctggatcctggtgggggcaccacaa
gcagcagggcagggcttgttgctgggcagtcggccaggagccctgttcaggtgtccaatc
acaccagaagagtacgactgtgagagggtggatatcgatggagatgtgagtctggacaga
gagagcaaagacaaccagtggctgggagtgactgtaaagagccaggggattggagggaag
gtggtgacctgtgctcacctgtatgagctcaggcaacgtgtaagccaaacctctgagacc
cgcgaccccatcgggcgctgctacgtcctgagtgaggacctgacagagcgagatgacctg
gatggaggggagtggaagttctgcgagggtcgaccgcagggacatgagcagtttggcttc
tgtcagcagggcctgtctgtcagtttcaccccagacaacaacttcattctgttcggggct
ccgggaacatacaactggaaaggtgagatgcgcgtccaactcctaaaccagactctgctt
gacctcggtttctatgacgatgggccctacgaggtggcagatcagaaacagctaaatgcc
cagctcatccctctgccctaccacagttacctggggctcttgttcatggctagccccgtt
gaagatgcactgctgtacaaaactctggagccctccaaccggcctacaccgtttgaggat
gtagctcataatagctacttagggttctctgtggactccgccatgggaataatgagcctt
ggggagctcacctttgtggcgggggcaccaagggccaatcacacaggggctgtagtgctc
ctgcgaaaggacaatgtgtaccggctggtgccacagcacattttctggggggaggagctg
gcctcttcatttgggtactcggtagctacagcggatctcaacagagacggctggaccgac
ctgattgtgggagctcctaactttttcgaccgtaaggcagagattggtggagcagtgtat
gtgtacctgaacccccttggtcactgggacgatcaggcccgtcccattcgtcttaatggt
acatatgactccatgtttgggatgacagtcagcaacgtaggagatctggaccaggatgga
tacggagatattgctgttggagcaccctttgatggagatggcaaagtttatatctacaga
ggttcagatgctggaattgaaacaaaacctgctcaggttctggacggtcgtgactttgac
gtgagacgttttggatactccatctcaggtagtttggatattgataacaaccactatcca
gaccttgcagtgggctcccttaatgattcagtggttctcttcaggtctcgtccagttatt
catgtggtcagggaaataactgttgaccctcaacacattgatctggagcagcacaactgt
aagggcagagaaggagtctgcgtggaggtcaaggcctgcttcacctttacagcccaccca
aaaaactactcaccacacataacccttgtggtgctctttgaagcggacactgagcgcagg
aagctgggcctaccacatcgtgttaatttcctgggtcgcaggcctctggagccggagtac
actcagacagaagaagtggagctgcatcaccagcgtcaccctgtgtgcaccactgctgtc
ttccagctccatgagaacatccgtgacaaactgcgtcccatctcgctggcaataacccat
actatcaagcccgtgccaccacgcagacactcagctaccaagaagctggagaaactggcg
cctgtactgagtgtttctccctctaacacactgcactctgaggtgaatttcctgcgggaa
ggatgtggcaccgacaaaatctgtcagagcaacctgaagctgagctaccagtttggaaca
cgacctctgacttctgacctcttcacccctctgccaaaagatgaggatgatgtgcaggtc
ttctccctgtcagaccagcggttggtggtactggagatcaccgtcaccaacatgccctct
aacccgctggagcctgacgaggatggagatgatgctcatgctgctcagctgcttatcaac
cttccaagcacgctgtcgtatgctggctccaggatcccatcacaaatgaggtgtcaagcg
aaccagaatggctcccaagttgaatgtgacttgggaaaccccatgaaacgagatactaag
ctgaaattctccatcaacttgagcacatctaacatcacgatcgagaccactgagctgaca
gcagatctcgtattaactactatcagtgaacagcttgatctggccccagtcacagcattt
gctaaggttgtgatagagctccctctgtctgtcagcgggctcgctcgtcctcaccagctg
ttcttcagcggggctgtaaagggagagagtgccatgaccagtctggaggacatcggaagc
cctgtggattttgagtttgtggtggctaatccaggtcaagctctgaacacgctcggctcg
gccttcctcaatatcatgtggcctcatgagttggccaatgggaaatggctactttaccct
tctagtctgaagtttgaaggtcacccaaacaccctctgcactcccatgggggtcttgaat
cctctgaagctatacagctccgcacctacagagcctccaccacctgtcactcaaatgcct
gttagacagcgccgctcctacccagaagatgaaggtcaagtgatgacaaaaggcagcgtg
ggacgaaccaccccagctgtggcagcttcagacagacgcaagtcgctcaaactggattgt
ctcttggggtcagcacgctgtgtgctcctccagtgtcccctccacagcttctctggtcag
gccatcctcaagatccatgcatggctgtggaacagcagtttcatagaggagttcccagca
gtcagtgctctggagctgctggtcagagcaaacattactgtgaagtccagcatcaaacac
ctgatcctcaaagatgctgctgcacaggttccagtgatgatctatcctgagcctggtctg
gctgaccagtactggatcccctggtggatcatcatcatagccatcctggcaggcatcctg
ttgctgactgtactggtctgcatactgtggaagtgtggcttcttccaacgggcccactac
aaagacaaattgcctcagtaccatgcggtgaagatccctcgtgaggaccggccacagttc
cagactgagaagtcaggagttgtacataaaaaggaatgggccacgcactggagcgatggg
acctcataa
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integrated database retrieval system
