Scomber scombrus (Atlantic mackerel): 134005512
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Entry
134005512 CDS
T10651
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like
KO
K06727
Fc receptor-like protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssco04090
]
134005512
CD molecules [BR:
ssco04090
]
Proteins
134005512
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
ig
I-set
Ig_4
V-set
Ig_5
V-set_CD47
Adeno_E3_CR2
Syndecan
Motif
Other DBs
NCBI-GeneID:
134005512
NCBI-ProteinID:
XP_062300421
LinkDB
All DBs
Position
23:complement(8834129..8852187)
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AA seq
1077 aa
AA seq
DB search
MKLAINQLSELWVFLSMNEAHVLLFEGDVVTLRCKPRPPGYEKKVTFYRDGSPLEMDRNH
QSHIISDTAVEMIYSVSVSDSGAYKCKFDGGGESEKRQLQVEGRRRITLTADSYTIRGQQ
SVTLTCYVEDSAGWKYQWFRQTSTDSGKVLQTANVGESDRLRISQGGIYTCRGWRSDPDA
VTPESNAVTIQETVKAVVTLQPNGPLIYSGETITVRCEIERGGNTGWEYEWSENNVVSPQ
KDKEYRISASSSSYIIFMCKGRRDFYFSTEWSETVTLRRSLNKAEPTLTADSYIIPVGGS
VTLTCSVDSSADWKYYWFRRDSGSSALQSITNVKPVNKVSEGGIYQCRAGRGDPEIFTED
SRAVTVWKHVSNKAVVTLQPNGPLIYSGETITVRCEIGGGNTRWEYEWSRNNMDISHKDN
EYKIIRASVSHSGNYRCKGRKDSYSSTEWSDVFTLTVSSNKPKPTLTADKTITPVGGSVT
LTCSVDGSADWKYDWFRQTSESSAPQLIRNVNLNRVISVYQGGIYYCRGGRGGGRGDSVF
YTEDSNTVTIQETVPNKAAVVTLQPNWTEIYSGETIMLRCEIHDGDTEWEYEWKSPRYTS
TNNNEYMISKASSYDSGNYSCRGKKKNAQHVSEWSADIKLTVSYNKPAPVLTVSPLWLSP
GDSVTLSCEVEHPSAGWRFYWYKTVPKLSDNSYIYELLPGSINGIVQNIYTVNGSTHTAG
YKCRAGRGDPVYYTRYSKPGFVWSGDVHSAVTLKVSPDRVQHFTSDSVSLSCEGNFTKCR
VRRFSEDYSDCYKWRSITGSTCNIKRYQQSDAVYWCESGSGEFSNTVNITIQKADIILVS
PVHPVTEGQSVTLGCKLRTGELPSNVFFYQNDKLIQSDTRRELNISAVSKSDEGFYKCKY
SGEESAQSWMSVQAVSRPENSSSLIPLIVGLVCGVVFIILLILLYLYRRSKGSLFIRPIQ
PESTNQNETQHNENSSSLHDADESQNVTYSLIELKNFAKTGKRQITVESSVYAEVKTGSA
ADDGLTYAQVNHDIKGKAKKHKGKSAPAATDEAVYSEVKPGTAHGNNSVMLCSDCNN
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgccatcaaccagctcagtgaactctgggttttcctatccatgaatgaagca
catgtgctactgtttgagggagacgtagtgactctgcgctgtaagcctcgtcctcctgga
tatgagaagaaagtcactttctacagagatggatcgcctcttgaaatggacagaaaccat
caatcccatataatatcagacactgctgtagaaatgatttattcagtgtcagtgtcagac
agcggtgcttataagtgtaagtttgatggaggaggagaatcagaaaagagacaactacaa
gtggaaggtagacgcaggattacactgacagcagacagttacaccatacgaggacagcag
agtgtgactctgacctgctatgtggaggactctgctggctggaaatatcagtggttcaga
caaacctcaacagattctggaaaagttcttcagacagcaaacgttggtgaatcagacaga
ctcaggatctcacagggaggcatttacacctgcagaggatggagaagtgacccagatgcc
gtcacacctgaaagtaatgcagtcactattcaggaaactgttaaggctgttgtgactctg
caacccaacggtcctctgatatacagtggtgagacaatcactgtcagatgtgagatagag
agaggtggaaacactggatgggaatatgaatggagtgaaaacaatgtggtctcacctcag
aaagataaagaatatagaatcagtgcttcttcatccagttatataatcttcatgtgtaag
ggtagaagagatttctatttctcaacagagtggagtgaaaccgtcacactgagacgatca
ttgaataaagccgagccgacactgacagcagacagctacatcataccagtaggaggcagt
gtgacactgacctgctctgtggattcctctgctgattggaaatactactggtttagacgt
gactcaggttcttctgctcttcagtccataacaaatgttaaaccagttaacaaggtctca
gaaggaggcatctatcagtgcagagcaggaagaggagacccagagatcttcacagaggac
agcagagcagtcactgtttggaaacatgtttccaacaaggctgttgtgactctgcaaccc
aacggtcctctgatatacagtggtgagacaatcactgtcagatgtgagataggaggtgga
aacactcgatgggaatatgaatggagcagaaacaacatggacatatctcacaaagataat
gaatacaagattatcagagcttctgtttcccacagtggaaactacaggtgtaaaggtaga
aaggactcatattcctcaacagagtggagtgatgtcttcacattgacagtatcatcaaat
aaacccaaacccacactgacagcagacaaaaccatcacaccagtaggaggcagtgtgaca
ctgacctgctctgtggacggttctgctgactggaaatacgactggttcagacaaacctct
gagtcttctgcacctcaactcataagaaatgttaacctgaacagagtcataagtgtttat
caaggaggcatctactactgcagaggaggaagaggaggaggaagaggagactcagtcttc
tacacagaggacagcaacacagtcactattcaggaaactgtcccaaataaggctgctgtt
gtgactcttcaacccaactggactgagatatacagcggagagacgatcatgctgagatgt
gagatccatgatggagacacagagtgggagtatgaatggaagagtccccgttacacatct
acaaataacaatgaatacatgattagcaaagcttcctcatacgacagtggaaactacagc
tgtagaggcaaaaagaaaaatgcacaacatgtttcagagtggagtgctgacatcaaattg
acagtatcttataataaaccagcacctgtcctcactgtgtctccattatggctgagtcct
ggagactcagtaactctgagctgtgaggttgaacatccatctgcaggatggaggttttac
tggtataagactgttcccaaactatcagacaactcctacatctatgagctgctacctggt
agcatcaatgggattgtgcagaatatctacactgttaacgggtcgacacacacagcagga
tataagtgtagagctggaagaggagacccagtgtattacactcgatacagcaaacctggg
tttgtttggtctggagatgttcattcagcagtgactctcaaagtgagtcctgacagagtg
cagcacttcacctctgactctgtctcactgagctgtgaaggaaactttactaagtgcaga
gtgaggaggttttctgaggactactcagactgttataagtggaggtccataactggatcc
acatgcaacatcaagagatatcagcagagtgatgcagtgtactggtgtgagtctggatca
ggagagttcagcaatacagtcaacatcactatacagaaagcagatattatcctggtgagc
cctgtgcatcctgtgactgagggacagtctgttactcttggctgcaaactgaggacagga
gaattaccttccaacgtgtttttctatcaaaatgacaaacttatccaaagtgataccaga
agagagctgaatatctctgcagtgtcaaagtcagacgaaggtttctacaagtgtaaatac
tcaggagaagaatcagcacagagttggatgtcagttcaggcagtgtccaggcctgaaaac
tcttcatctcttataccattaattgttgggctggtttgtggagttgtatttattattcta
ctgatcctgttgtatctctacagacgatccaaaggttctctctttatcagaccaatccag
cctgagagcaccaatcagaatgaaactcaacataatgaaaactcctcttctcttcatgat
gcagatgaatcccagaatgtcacatattctttgatcgagcttaaaaactttgctaagacg
ggaaagcgtcaaataacagtggagagctctgtttacgctgaggtgaagacaggatctgct
gcagatgacggtctaacgtatgctcaggttaaccatgacattaaaggcaaagccaagaaa
cacaaaggaaaatcagctcctgcagcaactgatgaagctgtttattctgaagttaaacca
ggaacagctcatggtaataattctgtcatgttatgttcagactgtaataattaa
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integrated database retrieval system
