Scomber scombrus (Atlantic mackerel): 134005562
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Entry
134005562 CDS
T10651
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134005562
04518 Integrin signaling
134005562
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134005562
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134005562
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134005562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Lectin_C
Motif
Other DBs
NCBI-GeneID:
134005562
NCBI-ProteinID:
XP_062300469
LinkDB
All DBs
Position
23:17240104..17267373
Genome browser
AA seq
2338 aa
AA seq
DB search
MSSAPLPPSASSRRLNSEGRRDALPVCQLRYRCHNSDSNGVSEGSICLCSKSPPDAQAHW
PPASKMSKYYFVSAPLNWTEAQSYCRQVYTDLATIENTADVSAVNSVTSNDTGKAWIGLY
DDLVNSWRWSLNDSSFYGEGETEYRNWDTITDEPNNLDGQQYCVQLYGSYSGTWGDTECS
NELPFVCYNGALVSVASNPSRQYYFVSTPLNWTEAQSYCRQVYTDLATIENTADVSAVNS
VASNGTGTVNGAASFVLVNTNLNWTEAQSYCRENYVDLPSIRNETENNIITNLTGGLFVW
IGLHREKVWSDGSDSLFRNWASLQPGSSTERCVTTSFNDSGQWFDDDCSIKFPFICYKPI
PPNAKNLKTIKQDETSITLQWNKVNDNASFILQFDGTEINITAPDGDGAVTHTVSSLTAG
TKYTFTLFSVLDNVRSSGINITAVTAPPNTNSFTSTGQNETSITLQWNKVNNTGSFILQF
DGAEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVLDNVRSSGINITAVTAPPNTNSFT
STGQNETSITLQWNKVNNTTSFILQFDGTEINITAPDGDGALTHTVSSLTAGTTYTFTLF
SVFENIRSSGVNITAVTAPLNAESFRSIGQNETSITLQWNKVNNTTSFILQFDGAEINIT
APDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPPNTNSFTSTGQNETS
ITLQWNKVNNTTSFILQFDGTEINITAPDGDGAVTYTVSSLTAGTKYTFTLFSVFENIRS
SGVNITAVTAPQNAESFKSTGQNETSITLQWNKVNNNTSFILQFDGTEINITAPDGDGAV
THTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPLNAESFRSIGQNETSITLQWNKV
NNTTSFILQFDGAEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNITAV
TAPQNAQAFKSTGQDETSITLQWNKVNNTTIFILQFDGTEINITAPDGDGAVTHTVSSLT
AGTKYTFTLFSVFENIRSSGVNITAVTAPPNTNSFTSTGQNETSITLQWNKVNNTGSFIL
QFDGTEINITAPDGDGAVTYTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPQNAES
FKSTGQNETSITLQWNKVNNNTSFILQFDGTEINITAPDGDGAVTHTVSSLTAGTKYTFT
LFSVFENIRSSEVNITAVTAPLNAESFRSIGQNETSITLQWNKVNNTTSFILQFDGAEIN
ITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNITAITAPQNAQAFKSTGQDE
TSITLQWNKVNNTTIFILQFDGTEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENI
RSSGVNITAVTAPPNTNSFTSTGQNETSITLQWNKVNNTTSFILQFDGTEINITAPDGDG
AVTYTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPQNAESFKSTGQNETSITLQWN
KVNNNTSFILQFDGTEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNIT
AVTAPLNAESVRSIGQNETSITLQWNKVNNTTSFILQFDGAEINITAPDGYGAVTHTVSS
LTAGTKYTFTLFSVFENIRSSGVNITAVTAPQNAQAFKSTGQNETSITLQWNKVNNTTIF
ILQFDGTEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPPNT
NSFTSTGQNETSITLQWNKVNNTTSFILQFDGTEINITAPDGDGAVTYTVSSLTAGTKYT
FTLFSVFENIRSSGVNITAVTAPQNAESFKSTGQNETSITLQWNKVNNNTSFILQFDGTE
INITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPLNAESFRSIGQ
NETSITLQWNKVNNTTSFILQFDGAEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFE
NIRSSGVNITAVTAPQNAQAFKSTGQDETSITLQWNKVNNTTIFILQFDGTEINITAPDG
DGAVTHTVSSLTAGTKYTFTLFSVLDNVRSSGINITAVTAPPNTNSFTSTGQNETSITLQ
WNKVNNTGSFILQFDGTEINITAPDGDGAVTYTVSSLTAGTKYTFTLFSVFENIRSSGVN
ITAVTAPQNAESFKSTGQNETSITLQWNKVNNNTSFILQFDGTEINITAPDGDGAVTHTV
SSLTAGTKYTFTLFSVFENIRSSGVNITAVTAPQNAESLESTGQDETSITLQWNKVNNNT
SFILQFDGTEINITAPDGDGAVTHTVSSLTAGTKYTFTLFSVFENIISSGVNITAVTG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagccccgctgcctccctccgcttccagtcggcgcctaaacagcgagggaaga
cgagatgctctccccgtctgtcagcttagataccggtgtcataattcggattccaacggt
gtcagtgaaggcagcatctgcctctgctccaagtccccccctgacgcacaggcgcactgg
cctcctgcaagcaagatgagcaagtactactttgtgagcgcaccactgaattggactgaa
gcacagagctactgcagacaggtctacactgacctggccaccatagaaaacacagctgac
gtcagtgctgttaacagtgtcacatcaaacgacacaggcaaggcttggataggtctctat
gatgacttggtaaatagttggagatggtctctgaatgacagcagcttctacggtgaagga
gagacggagtatagaaactgggatactattactgatgaacccaacaatcttgatgggcaa
cagtactgtgtgcagctttatggttcctactctggcacatggggagacactgaatgcagc
aacgaactaccctttgtgtgctacaacggagcactggtcagtgttgcctctaatccatct
cgtcagtactactttgtgagcacaccactgaattggactgaagcacagagctactgcaga
caggtctacactgacctggccaccatagaaaacacagctgacgtcagtgctgttaacagc
gttgcatcaaacggcacaggtacagtaaatggcgctgcatcctttgttttggtcaacaca
aatttaaattggactgaagctcagagctactgcagggagaattatgtggatctacccagc
ataagaaatgagacagaaaataacatcatcacaaacctgacaggtggattatttgtgtgg
attggtcttcatcgagaaaaagtatggtctgatgggagcgactctctgtttcgaaactgg
gccagcttgcagccaggctccagcacagaacgatgtgtcaccacatcctttaatgactca
ggacagtggtttgatgatgactgctccatcaaatttccattcatctgttacaaaccaatt
ccacccaatgcaaaaaacttgaaaacgataaaacaagatgagaccagcatcaccctgcag
tggaataaagtgaacgataatgccagttttattctccagtttgatggtacagagataaac
atcactgcaccagatggagatggagcagtaactcacacagtctcatctctcactgctgga
actaaatacacattcactctcttctctgtgcttgacaatgtcagaagcagtggaataaac
atcactgcagttactgcccctccaaacacaaacagtttcacatcaacgggacaaaatgag
accagcatcactctgcagtggaataaagtgaacaacactggcagctttattctccagttt
gatggtgcagagataaacatcactgcaccagatggagatggagcagtaactcacacagtc
tcatctctcactgctggaactaaatacacattcactctcttctctgtgcttgacaatgtc
agaagcagtggaataaacatcactgcagtcactgcccctccaaacacaaacagtttcaca
tcaacaggacaaaatgagaccagcatcactctgcagtggaataaagtgaacaacactacc
agctttattctccagtttgatggtacagagataaacatcactgcaccagatggagatgga
gcattaactcacacagtctcatctctcactgctggaactacatacactttcactctcttc
tctgtgtttgagaacatcagaagcagtggagtaaacatcactgcagtcactgctcctcta
aatgcagaaagtttcaggtcaataggacaaaatgagaccagcatcactctgcagtggaat
aaagtgaacaacactaccagctttattctccagtttgatggtgcagagataaacatcact
gcaccagatggagatggagcagtaactcacacagtctcatctctcactgctggaactaaa
tacacattcactctcttctctgtgtttgagaacatcagaagcagtggagtaaacatcact
gcagtcactgctcctccaaacacaaacagtttcacatcaacaggacaaaatgagaccagc
atcactctgcagtggaataaagtgaacaacactaccagctttattctccagtttgatggt
acagagataaacatcactgcaccagatggagatggagcagtaacttacacagtctcatct
ctcactgctggaactaaatacacattcactctcttctctgtgtttgagaacatcagaagc
agtggagtaaacatcactgcagtcactgctcctcagaatgcagagagcttcaaatcaaca
ggacaaaatgagaccagcatcactctacagtggaataaagtgaacaacaataccagcttt
attctccagtttgatggtacagaaataaacatcactgcaccagatggagatggagcagta
actcacacagtgtcatctctcactgctggaactaaatacacattcactctcttctctgtg
tttgagaacatcagaagcagtggagtaaacatcactgcagtcactgctcctctaaatgca
gaaagtttcaggtcaataggacaaaatgagaccagcatcactctgcagtggaataaagtg
aacaacactaccagctttattctccagtttgatggtgcagagataaacatcactgcacca
gatggagatggagcagtaactcacacagtctcatctctcactgctggaactaaatacaca
ttcactctcttctctgtgtttgagaacatcagaagcagcggagtaaacatcactgcagtc
actgctcctcagaatgcacaagccttcaagtcaacaggtcaagatgagaccagcatcact
ctgcagtggaataaagtgaacaacactaccatctttattctccagtttgatggtacagag
ataaacatcactgcaccagatggagatggagcagtaactcacacagtgtcatctctcact
gctggaactaaatacacattcactctcttctctgtgtttgagaacatcagaagcagtgga
gtaaacattactgcagtcactgctcctccaaacacaaacagtttcacatcaacaggacaa
aatgagaccagcatcactctgcagtggaataaagtgaacaacactggcagctttattctc
cagtttgatggtacagagataaacatcactgcaccagatggagatggagcagtaacttac
acagtctcatctctcactgctggaactaaatacacattcactctcttctctgtgtttgag
aacatcagaagcagtggagtaaacatcactgcagtcactgctcctcagaatgcagagagc
ttcaaatcaacaggacaaaatgagaccagcatcactctacagtggaataaagtgaacaac
aataccagctttattctccagtttgatggtacagagataaacatcactgcaccagatgga
gatggagcagtaactcacacagtgtcatctctcactgctggaactaaatacacattcact
ctcttctctgtgtttgagaacatcagaagcagtgaagtaaacatcactgcagtcactgct
cctctaaatgcagaaagtttcaggtcaataggacaaaatgagaccagcatcactctgcag
tggaataaagtgaacaacactaccagctttattctccagtttgatggtgcagagataaac
atcactgcaccagatggagatggagcagtaactcacacagtctcatctctcactgctgga
actaaatacacattcactctcttctctgtgtttgagaacatcagaagcagtggagtaaac
atcactgcaatcactgctcctcagaatgcacaagccttcaagtcaacaggtcaagatgag
accagcatcactctgcagtggaataaagtgaacaacactaccatctttattctccagttt
gatggtacagagataaacatcactgcaccagatggagatggagcagtaactcacacagtg
tcatctctcactgctggaactaaatacacattcactctcttctctgtgtttgagaacatc
agaagcagtggagtaaacattactgcagtcactgctcctccaaacacaaacagtttcaca
tcaacaggacaaaatgagaccagcatcactctgcagtggaataaagtgaacaacactacc
agctttattctccagtttgatggtacagagataaacatcactgcaccagatggagatgga
gcagtaacttacacagtctcatctctcactgctggaactaaatacacattcactctcttc
tctgtgtttgagaacatcagaagcagtggagtaaacatcactgcagtcactgctcctcag
aatgcagagagcttcaaatcaacaggacaaaatgagaccagcatcactctacagtggaat
aaagtgaacaacaataccagctttattctccagtttgatggtacagagataaacatcact
gcaccagatggagatggagcagtaactcacacagtgtcatctctcactgctggaactaaa
tacacattcactctcttctctgtgtttgagaacatcagaagcagtggagtaaacatcact
gcagtcactgctcctctaaatgcagaaagtgtcaggtcaataggacaaaatgagaccagc
atcactctgcagtggaataaagtgaacaacactaccagctttattctccagtttgatggt
gcagagataaacatcactgcaccagatggatatggagcagtaactcacacagtctcatct
ctcactgctggaactaaatacacattcactctcttctctgtgtttgagaacatcagaagc
agtggagtaaacatcactgcagtcactgctcctcagaatgcacaagccttcaagtcaaca
ggtcaaaatgagaccagcatcactctgcagtggaataaagtgaacaacactaccatcttt
attctccagtttgatggtacagagataaacatcactgcaccagatggagatggagcagta
actcacacagtgtcatctctcactgctggaactaaatacacattcactctcttctctgtg
tttgagaacatcagaagcagtggagtaaacattactgcagtcactgctcctccaaacaca
aacagtttcacatcaacaggacaaaatgagaccagcatcactctgcagtggaataaagtg
aacaacactaccagctttattctccagtttgatggtacagagataaacatcactgcacca
gatggagatggagcagtaacttacacagtctcatctctcactgctggaactaaatacaca
ttcactctcttctctgtgtttgagaacatcagaagcagtggagtaaacatcactgcagtc
actgctcctcagaatgcagagagcttcaaatcaacaggacaaaatgagaccagcatcact
ctacagtggaataaagtgaacaacaataccagctttattctccagtttgatggtacagag
ataaacatcactgcaccagatggagatggagcagtaactcacacagtgtcatctctcact
gctggaactaaatacacattcactctcttctctgtgtttgagaacatcagaagcagtgga
gtaaacatcactgcagtcactgctcctctaaatgcagaaagtttcaggtcaataggacaa
aatgagaccagcatcactctgcagtggaataaagtgaacaacactaccagctttattctc
cagtttgatggtgcagagataaacatcactgcaccagatggagatggagcagtaactcac
acagtctcatctctcactgctggaactaaatacacattcactctcttctctgtgtttgag
aacatcagaagcagtggagtaaacatcactgcagtcactgctcctcagaatgcacaagcc
ttcaagtcaacaggtcaagatgagaccagcatcactctgcagtggaataaagtgaacaac
actaccatctttattctccagtttgatggtacagagataaacatcactgcaccagatgga
gatggagcagtaactcacacagtctcatctctcactgctggaactaaatacacattcact
ctcttctctgtgcttgacaatgtcagaagcagtggaataaacatcactgcagttactgct
cctccaaacacaaacagtttcacatcaacaggacaaaatgagactagcatcactctgcag
tggaataaagtgaacaacactggcagctttattctccagtttgatggtacagagataaac
atcactgcaccagatggagatggagcagtaacttacacagtctcatctctcactgctgga
actaaatacacattcactctcttctctgtgtttgagaacatcagaagcagtggagtaaac
atcactgcagtcactgctcctcagaatgcagagagcttcaaatcaacaggacaaaatgag
accagcatcactctacagtggaataaagtgaacaacaataccagctttattctccagttt
gatggtacagagataaacatcactgcaccagatggagatggagcagtaactcacacagtg
tcatctctcactgctggaactaaatacacattcactctcttctctgtgtttgagaacatc
agaagcagtggagttaacatcactgcagtcactgctcctcagaatgcagaaagcctcgaa
tcaacaggtcaagatgagaccagcatcactctgcagtggaataaagtgaacaacaatacc
agctttattctccaatttgatggtacagagataaacatcactgcaccagatggagatgga
gcagtaactcacacagtatcatctctcactgctggaactaaatacacattcactctcttc
tctgtgtttgagaacatcataagcagtggagtaaacatcactgcagtcactggttag
DBGET
integrated database retrieval system
