Scomber scombrus (Atlantic mackerel): 134005620
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Entry
134005620 CDS
T10651
Symbol
arhgef11
Name
(RefSeq) rho guanine nucleotide exchange factor 11 isoform X1
KO
K12331
Rho guanine nucleotide exchange factor 11
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
134005620 (arhgef11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
134005620 (arhgef11)
Membrane trafficking [BR:
ssco04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
134005620 (arhgef11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
RhoGEF
PH_16
PDZ
PDZ_6
PDZ_2
RGS
Pept_S41_N_bact
Rep_fac-A_C
FAD_binding_3
Activator-TraM
Motif
Other DBs
NCBI-GeneID:
134005620
NCBI-ProteinID:
XP_062300530
LinkDB
All DBs
Position
23:8585080..8607762
Genome browser
AA seq
1438 aa
AA seq
DB search
MSLRQPTSTLDRLSSLTIGDSERKSSATQQREPTTDVSVESTGPGLVQRCVVVQKDQLGF
GFTVCGERVKLVQNVRPGGAAVKAGVQEGDRIIKVNGSLVSSMSHQEVVKLIKSGPYAAL
TLQGPPPSAASLPLEPLPTDLTPIQRTSLGGEAPPPPPPPLPSGLSSTPSQRITGPKPLQ
DPEVQKHATQILRKMLEQEEAELQDLMEERQRNPSTSLEERIESAQRRAHQVRVKIQQDL
EGTRSESIASYVIAGEGRLSMDSSEGDVEAFESPHSSPSSSFRTPLHRRQNSDTHTLSDS
GGKAQIIGPEEEDEEDDGYAFNEMDGPFQDIEMLKLRPAHMTVFMRYVFTQLLDPNPLLF
YLSVEAYLGSSPKDARSLAPQICSHFLDPDAPLKIKAREEYLTDIESRLQAQEDIRGPLS
ELQQEVLPDIQYQIQDYRNKQMMGLGSLFGEGDLLQLDGDPAKERQVVDRQVTALWEILS
KHEEDRSSPLASAVLLYLRHSGIKLRDSKVFPGLSTEKEKWLAFLKTKKLSGTKKEKDGE
DKKRNPILKYIGKPRSTSQSTFHVPLSPTEVRPGSVRNIIQQFENHTETGEEEGGDPADP
QRLSSSSLGEDSMDSPTISVRLARSESLKAQGEGRRRGVTSGTESVPRSRSDVDMEDSGE
EREGPGLRPLQHSASSSASSSSARSLENPTPPYTPRSRRRSVDSPLALLPDAGVLEEEVC
DSQNWQETVPPHVLATLSQKEVDRQAVIYELFTTEVSHLRTLRVLDQVFFQKMRSVLNTD
ELACIFPNLPQVYELHASLCEAMKKRRESPIVQNIGDVMLARFEDANGDEFQEQASQLCS
QQSQALELIKNKQRKDPRFAHIIQECEASPHCRRLQLKDLLVSEMQRLTKYPLLLDNILK
HTDASSADLPSLQHAQVCCRGILQAVNEIVRETEHRQRLSQYQRRLDAAPQFKSLDLSTK
KMIHEGPLTWKVSKDKQLEIQALLLSDCLLLLQRGPDDRLQLRYPSRWLGGGGGGSGDSK
TSFSPLVKLDSLLVRSVATDNKALYVISTTERQIYELVAGTSSEKNTWKDLLEKTISSSG
SSSPLINHGSMPISSPSLGSASPVSTGSHVYTDNSMTEQSDSMETHSSTDDIALSADTTT
DQSGAFICGERQAVGVAEAALQDVETLRQLIIRDLEEDAWSHDSDDTPTNETANERGSFS
ERQRPESQETILSFSTSEWEAEPEEAPTSDTEQPSVQVIRKAVVAGSSSSVPDGITDDVS
LLSNQSSKPSEATAQGNFFYLVMPTEQGESATDDLNDPPTPTASHFPQPLEEVTSAETQP
EEATSAGGPAADQSEAMQLEQEEETEQLKAGQQSHVIKNVDEIFLTIEGLMSKLRQLKEI
ENAHHKLLKTLKEPSVNQESEDQQCRSATVSRTPSLDRGSGDGKEGSPAEPKIQSTGF
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccgccaacccacctccactctggacaggctcagcagtctcaccatcggggac
tcggagcgcaaatcctctgccacgcagcagagggagccaacgactgacgtctctgttgag
agtactggtcctggtcttgtccagagatgtgtggtcgtgcagaaggaccagctgggtttt
ggcttcacagtgtgcggggagagagtgaagctagtgcagaacgtccgaccaggtggtgca
gcagtcaaggccggggtccaagaaggggaccgaatcataaaggtgaacggctcgctggta
tcctccatgtcccatcaggaggttgtgaagctcatcaaatccggaccttatgcagctctg
acgctacaagggccaccgccttcagcagcctctttgccactggagccccttcctactgac
cttacacccattcaaaggacatcactaggtggagaggctccaccccctccacctccaccc
ttgccttctggactgagcagcaccccttcccaaagaatcactggacccaaaccactacag
gacccagaagtacagaaacatgccactcagatactcaggaaaatgctggagcaagaagag
gctgaactgcaggatttaatggaggagcggcagaggaacccgtcaacatctcttgaagag
cgtattgaaagtgcccagaggcgagctcaccaagtcagggttaagattcagcaagatctg
gaaggaacacggtcagaatctattgccagttacgtcatagcaggagaaggtcgattatca
atggactcaagtgaaggagacgtggaggcgtttgagagtccccactcctccccctcatct
tccttcaggacccccctacaccgacggcagaactccgacacacacaccctctctgattcg
ggtggcaaggcccagatcatcggccctgaggaggaggatgaagaagatgatggctatgct
tttaatgagatggacggtccgttccaggacatcgagatgttgaagcttcgaccggcccac
atgacggtgttcatgagatatgtcttcacgcagcttctggaccccaaccctctgctgttc
tacctgtcggtggaggcttacctgggctccagtcctaaagacgcccgctcacttgcacct
caaatctgctcccacttcctggacccagacgctcccttgaaaatcaaagcacgagaggag
tatctcacagatatcgagagtcgactacaagcccaagaggacatcagagggcctctgtct
gagctgcagcaggaggtgctgccggacatccagtaccaaatacaggactacaggaacaag
cagatgatgggcctcggctctctgtttggagaaggagacctgctgcagctggacggagac
ccggcgaaagaaagacaggtggtggacagacaggtcacggccctctgggagatactatcc
aagcacgaagaggacagaagttctcctctggcgtcggctgtgctcctttacctccgtcat
tctggcatcaaactcagagactccaaggtcttccctggtctgagcacagagaaggagaag
tggctcgccttcttaaagacgaaaaagctgagtggtacaaagaaagagaaagatggagag
gacaaaaagagaaatcccatcctgaagtacatcggcaaaccccggtccacatcccagtcc
acattccatgtcccgttgtcacccaccgaagtccgtcctggcagtgtgaggaacatcatt
cagcagtttgagaatcacacagagacgggagaagaggagggaggcgaccctgccgacccc
cagcggctgtcctccagcagcctgggagaagacagcatggacagccctacgatctcagtg
cgtctggcacgcagcgagtcgttgaaggctcagggtgaaggtcgacggcggggcgtcact
tcaggaacggagtctgtcccccgctcgcgtagtgatgtggacatggaggacagcggggag
gagcgggaggggccgggcctcaggccgctacagcacagcgcctcgtcgtctgcatccagc
agctctgcgcggtctctagagaaccctacacccccatacacccctcggtctagacgcagg
agcgtggactcaccgctggccctgctgccggacgccggggtgctggaggaggaagtgtgt
gacagtcagaactggcaggagacggttcctcctcatgtcctcgccacgctgagtcagaag
gaggtggacaggcaggccgtcatatacgagctgttcaccaccgaggtgtcccacctacgg
accttacgagtcctggatcaggttttcttccagaaaatgaggtctgtgctgaacactgat
gagctggcctgtatcttccccaacctgccccaggtctacgaactccacgcgagtctgtgc
gaggcgatgaagaagcgaagagaatctcccatcgtgcagaacatcggggacgttatgctg
gcgaggtttgaggatgctaatggagacgagtttcaagaacaggcgtcccagctgtgcagc
cagcagtctcaggctctggagctcatcaaaaacaaacaacgcaaagaccctcgctttgct
catattatacaggagtgtgaggcgagtcctcactgtcggaggttgcagctcaaagacctg
cttgtgtcggaaatgcagagactcacaaagtaccctctgctgcttgacaacatcctcaaa
cacacagacgcgagttctgccgacctcccgtcactccagcacgcccaggtgtgttgcaga
gggatactgcaagctgtcaatgagatcgtcagggaaacagaacaccggcaacgcctcagc
caataccaacgcaggctggatgctgctcctcagttcaagagtctggacctgagcactaag
aagatgatccacgaaggtcccctcacctggaaagtcagcaaagataagcagttagagatc
caagcgctgctgctgtcagactgcctgctcctgctgcagcgaggcccggacgaccggctg
cagctgcgatatccttcccgctggctgggtggaggcggaggaggcagcggagacagcaag
acctccttcagccctctggtgaagctggactcgctgttagtgcgctcggtagcgacagac
aacaaagctctctacgtcatcagcaccacagagaggcaaatctacgaactggtggctggg
acatcatcggagaaaaacacctggaaagacttacttgaaaagaccatctcatcatctggt
agttcatcaccactgatcaatcatggatccatgccaatatcttctcccagtcttggcagt
gcatccccagtctcaactggaagtcacgtctacacagacaactctatgacagagcagtct
gactccatggagactcattcctccaccgatgacatcgcgctctcggccgacacgactacg
gaccaatcgggagctttcatctgtggtgaacgacaagcagttggtgtggcagaggcggct
ttacaagacgttgaaacattaaggcagctcataatacgagatctggaagaggacgcttgg
agccacgattcagacgacacacccaccaacgagacggccaatgaaaggggctcgttctcg
gaacgtcagcggccggagtctcaggagaccatcctcagcttcagcaccagcgaatgggag
gccgagcctgaagaggctccgacctcagacacggagcagcccagcgttcaggtcataagg
aaagctgtggttgcgggctcttcttcttctgtccctgacggcatcactgatgatgtcagc
ctcctctccaaccaatcatccaagccgagtgaggccacagcgcaggggaactttttctac
ttggtaatgcctacagaacaaggagagagcgccactgatgacctaaacgaccctccaacc
ccaacggccagtcacttcccccagcctctggaggaagtgacatcagcagagacgcagcca
gaggaggcaacgtcagccggcggtccggcggccgaccaatcagaggctatgcagctggag
caggaagaggaaacggagcagctgaaggccgggcagcagagtcatgtgatcaaaaacgtg
gatgagatttttctcacgatcgaggggctgatgagcaagctgcgccagctgaaggaaata
gagaacgcccatcacaaactattaaaaaccctcaaagagccgtctgtcaatcaggagtca
gaagaccaacagtgtcgctcagcaaccgtctccaggacaccgtctctggatcgcggctca
ggagacggcaaagagggaagtccggcagaacccaagattcagtcgactggattctga
DBGET
integrated database retrieval system
