Scomber scombrus (Atlantic mackerel): 134005803
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Entry
134005803 CDS
T10651
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134005803 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134005803
NCBI-ProteinID:
XP_062300788
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Position
23:complement(21743418..21789386)
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AA seq
1808 aa
AA seq
DB search
MTESLKTQFDFQSPVIQAQTVRTLVAAVLKEKGQNGQITGSSTQGPALEALWQQCCSDCA
PMRSTCCDAMVLLVDQAHADLHYVLNSVLNLLPSARNVQGLIKVIGRLLQTQADQRDRET
HFTCPYSIRSSPHPYITALENRPDCWPALLLEIDDFIQQAADRNEPAYITMLAPFLRYLY
CEPQRQPQLALLRHSLLRVLLPKHPGAGSDVQSKDQEETSPVLDSLLQCLCQLVPHMQVD
SVEAVLELRGFMDTLLQGLVGASEERWRTERVGLMLQLLCACQRCLKLSGDCRPLLSLMQ
QLLPACQQELPLDELLMGVALLLLEAPAAQQTSLLSLALSLVPEQAELCPWLSPVLVLPV
LQLLSCSGLTEPLSDQRTHNQNHNLAHSLLRCISRHTDKPSQSGVPLALPLTSWYSELSV
ALSVLRKVAGDRAAAADWLLSVRSALSSSQRLPSTLVLVVTHLIITGREDVCQLALNAGQ
AVAAADPCQVPSLLPVLLFKLGKEKNPDLAHAVLNCLPNLGTHKLCVPMVLQTLHMLAST
PKLKAVAMRLMTALWKKQDRVYPELQRLLGQKDSRVVVGRDAQWEQILARAACLRDICRE
RPYQHGGDMLAAITLTLNQCTKPDLASPAALALQGLQELCRAEVVDIVSTWRSLGPGLSC
DSRPLMVKAIAELLALVPTLTVTSEEYQKLKEEVVSFLWNYAVSKDPEVASCGYRALADF
PEVVHKITLLPEAARPAIKLPEQEEDEDAQEKEEEEKDLSVPGSSYVKLLALTSLPVLQA
FELFLTSLVKQEMSKMPRGVYFSALRGGNLRSDQGKTVAGIPSFMLKTYEKNKQPGLKPG
LAAGLLLCYELPVQTDRDGKPIDRFLVSRSRSYQQNLTALIHEVNIQPSEWHRALLLPQA
WRGFMSRAFHAALQGRRADLEMQQKQGKENPQELQYKQHCAWLWARDQLTDVIKAATKDS
PVVQGNSILALSGLAAALAKYESNLPADNDGSLGAGPEFVPTASWLAMVLDTLLSIISSS
YKARGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLVQVLSALKAGL
PGSPTADDSQAVQFHSGLALGMVLSSLHHQRLSDVSAQKDADLLLSSLDALEKCSFNPDL
EYNTGCMLGLGLVLAALCSSGQVEQHVHVTQTLDKLLTNLQDSSGQGRMMQEVLAYSVAC
VGVSAFSGGIVDAAKAEEVMNTLRTLTEESQQTPGFSLALGLAVHGLSMSGHGKAEDIHP
RLLAAWIKILLAEGCPTMQRLAAANGLVASVGSESYIIQLKSEMELSSQQQSRINEVIRA
ITQIITFSGAIGLQSNSACLVGHLHLAHMSTSHSHTAVPQDFSYLPENSVIRSVVDFITE
AGKKGPDFAHPALVKTALTPLSSVGASFQYPPINWSAVLSPLMRLSFGEDVQHQCVVLAA
SQAQSSQSASLFLGSWLSPPLVHSLSYQTRAHLYESLGLWMKHVAEDKLQVYVESLGLQQ
FQEDLRPQRLSLCRSLLQGLAQAMALPNPPNNCWTILCSATEKIFTLLPNQIQDSEVDLY
VGITKCLSEMSDTEIDRIAQVTEAQMEKTCFVLAYLTSQGRVPLLGLNDVIAGVLRGWPR
HRVGWLLLQTFYQCRLAASANTGVSKRMEWLLELMGLIRNVAYGATAVACGDTKLATDFL
FHVFAAAVVSWGDHFMPLLLGIRAQWFPWQPDSKPPALQHSLYGEEPIADDAQSPCMLGM
SHSLALLLDKEPWSSQAHKFIDWLLSITEAPEQNVSTTSVNTARAALLALRSSAELQKKA
VWTRAYGW
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgacggagagtttgaagacacaatttgatttccagagccctgtcatacaagcccagaca
gtgagaactcttgtagctgctgtgctaaaggaaaagggccaaaatgggcaaattaccggg
tcctccacacagggtccagcgctggaggctttgtggcagcagtgctgcagcgactgcgct
ccgatgcgttcaacctgttgcgatgccatggtgctgctggtggatcaggcccacgcagac
ctgcactacgtcctcaacagcgtcctcaacctcctgccctctgcaagaaatgtccagggg
ctgataaaggtgattggacggctgctacagacacaggcagaccagagggaccgagaaaca
cactttacctgtccttattctatcaggagcagcccccacccatacatcacagccctggag
aaccggccggactgctggcccgctctgctgctggagattgatgacttcattcagcaggct
gctgacaggaatgaaccagcctacatcaccatgctggctcccttcctgcgctacctgtac
tgtgaacctcagaggcaaccccagctcgccctcctacgacacagtctcctcagggtgctg
ctgcccaaacacccaggagcagggtcagacgtccagagcaaggaccaggaggagacatcg
ccggtgttggacagcctgctgcaatgtctctgccagctggtgccacacatgcaggtggac
agtgtggaggccgtgctggagctacgtggattcatggacactctgcttcagggtctggtc
ggggcctccgaggagcgatggaggactgagagagtcgggctgatgctgcagctgctttgc
gcctgtcagcgctgcctaaagttaagcggagactgcagaccgctcctcagcttaatgcag
cagctcttgcctgcctgccaacaggagctgccattggacgagctgctgatgggcgtggcc
ttgctcctgcttgaggctcctgcagctcagcagaccagcctgctcagtttagctttgagt
ttagtcccagagcaggctgagctttgtccctggttgagtccagtcctggttcttcctgtg
ctgcagctcctgtcctgttcaggtctcactgagccgctgtctgaccagaggacacacaac
cagaaccacaacctggcccacagcctgctacgctgcatcagcagacacacggataaaccc
agccagtctggcgtaccgttggccctgcctctcacttcctggtacagtgagctcagcgtg
gctctgtccgtactccgcaaagtggcgggcgatcgcgcggcggccgccgattggttgctg
tcggtccgctcggccctgtcgtccagccagcgcctgccctccaccctcgtcctcgtcgtg
acccatctcatcatcacgggtcgagaagacgtctgccagctggctctgaacgcgggtcag
gccgtggctgcggccgacccctgccaggtcccttccctccttcctgttctgttgttcaag
ctggggaaggaaaagaatccagatctggctcatgctgtgctcaactgcctgccaaacctc
gggactcataagctctgtgtccccatggtgctgcagactctccacatgctggccagcacc
cccaagctgaaagcagtggcaatgcgcctgatgactgctctgtggaagaaacaggaccga
gtttaccccgagctgcagcgtctgctgggtcagaaggacagcagggtggtggtggggagg
gacgcccagtgggagcagattctggccagggccgcctgcctcagggacatctgcagagag
aggccttaccagcatggaggtgacatgttggcagccattacactcactctgaaccagtgc
actaaaccagacctggcaagccctgctgctctcgccctgcaaggattacaagagctgtgt
cgggcagaggtagtggacatcgtgtcaacatggagaagtcttgggcccgggctcagctgt
gactcccgtccactgatggtcaaagctatagctgagcttctggctctggttcccacactc
actgtcacatcagaggagtaccagaaactaaaagaggaggtggtcagcttcctctggaat
tatgctgtgagcaaggatccagaggtggccagctgtggctacagggctttggcagatttt
cctgaagtggtccacaaaataactctgcttcctgaagctgccaggccggctataaagctt
cctgaacaggaggaggatgaagacgcgcaggagaaagaggaagaggagaaggatctctcc
gtccctggttcatcatatgtgaagctgctggctctcacatctttaccagttctacaagct
ttcgagctcttcctgacatcactggtgaagcaggagatgagcaagatgccacggggggtg
tacttctctgccctgagggggggaaacctgcgttcagaccagggtaaaacagtggcagga
atcccatcattcatgctgaagacctacgagaaaaacaagcagcctgggctgaagcctgga
ctagcagctggactgctgctctgttacgagcttcccgtgcagacggaccgcgacggcaaa
ccgatcgatcgcttcctcgtcagccgcagccgcagctaccagcagaatctgacagcgctc
atccatgaagtgaacattcagccatccgaatggcaccgtgctctcctgctgcctcaggcc
tggaggggtttcatgagccgagctttccatgctgccctacagggtcgacgtgctgatctg
gaaatgcagcagaaacaaggcaaagagaacccacaggagctgcagtacaaacagcactgt
gcctggttgtgggccagagatcagctgacagatgtcatcaaagctgccacaaaggacagt
cctgttgttcagggaaactccatcctggctctgagtggcctggctgctgccctcgccaaa
tatgagagcaacctgcctgctgataatgacggcagcctcggggctggaccagagtttgta
cctacagccagctggttggccatggtgctggacaccctgctcagcatcatcagcagcagc
tacaaggccaggggacaagttttcccatggttcctacatcgctcctactcaggtgagaac
acagccagtgccatcgctcgctcctgtgccagcctggctctgtccctgctggtccccgtc
ctggtggtgtggcaacgggacggcctggttcaggtcctgtcggcgctgaaggccggtcta
ccgggctctcccaccgcggacgactcccaggccgtccagttccactccggcctggcgctg
ggcatggtgctgtccagcctgcaccaccagcggctcagtgacgtctctgctcagaaggat
gctgatctgctcctcagctctctggacgctctggaaaaatgctccttcaacccagatctg
gaatacaatactggctgtatgttgggtctgggtttggtgctggcggctctctgcagcagt
ggacaggtggaacaacacgtccacgtcacccaaactctggacaaactgctgactaacctg
caggacagcagcgggcagggacgcatgatgcaggaggtcctggcgtactctgtggcgtgt
gtgggcgtctcagccttcagcggaggcatcgtagacgccgcgaaggccgaagaggtcatg
aacactctgcgcaccctgacggaggagagccagcagaccccaggcttctccctggctctg
gggttggcggtccacggcctgtcaatgtccggccacgggaaagcagaggacatccaccct
cgtctgctggccgcttggatcaagatcttactagcagagggttgtcccactatgcagcga
ctggctgctgccaacggtctggtggcttcagtaggatctgagagttacattattcagctg
aagagcgagatggagctttcctcccagcagcagagcaggattaatgaagttattcgtgcc
atcacacagatcataacgttctcaggagccattggcttgcagtccaacagcgcctgtttg
gtgggtcatttgcatttggctcacatgtccaccagtcacagtcacacagcagttcctcag
gatttcagttacctgccagagaacagtgtcatcaggtcagtcgttgacttcatcacagag
gctgggaagaaaggtccagactttgctcatccagctctggttaagactgcgctgacacct
ctatcatcagttggagccagcttccagtacccacctatcaactggagcgctgtcctgtct
cctctgatgaggctgagctttggagaggatgtacagcatcagtgtgtggtgctggcagcg
agtcaagctcagtcttctcagagtgcctctctcttcctggggtcctggctgtcaccgcct
ctcgtgcacagtctcagttatcagactcgggctcacctctatgagagtctgggcctgtgg
atgaagcatgtagctgaggacaagctccaggtctacgtggagagtcttggcctacagcag
ttccaagaggaccttcgtccccagcgcctgtccctgtgccgctccctgctgcagggtctc
gctcaggccatggctctgccgaacccccccaacaactgctggaccatcctctgctccgcc
accgagaagatcttcaccctcctgcccaaccaaatacaggatagtgaggtggatttgtac
gtaggaatcaccaaatgtctgtctgagatgtctgacacagagatcgaccgaatcgctcaa
gtcacagaggctcagatggagaaaacctgcttcgtcctggcttacctgacctcccagggc
agagttccccttctgggtctcaatgacgtcatcgccggcgtgcttcgcggttggccacgc
cacagagtgggctggctcctcctgcagactttctaccagtgccgactggctgccagcgcc
aatacaggcgtttccaaacgaatggagtggctgctagagctgatggggctcatccgaaat
gtcgcctacggcgcgaccgcagtcgcgtgtggagacaccaaactggccacagacttcctg
ttccacgttttcgccgccgctgtggtttcttggggtgaccacttcatgccgctcctcctc
ggcatcagggcccagtggttcccgtggcaacccgactccaagcccccagccctacagcac
agcctgtacggcgaagagccgatcgcagacgacgcccagtcgccgtgcatgctgggaatg
tcccacagcctggctcttctgctggataaagagccgtggagcagccaggcacacaagttc
atagactggcttctcagtatcacagaagctcctgaacagaatgtgtcaaccacgagtgtc
aacacagccagagctgctctgttggccctgaggtcctccgctgagctccagaagaaagct
gtgtggaccagagcgtatggctggtag
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integrated database retrieval system
