Scomber scombrus (Atlantic mackerel): 134005861
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Entry
134005861 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco02010
ABC transporters
ssco04148
Efferocytosis
Brite
Transporters [BR:
ssco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134005861
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GFIT
Other DBs
NCBI-GeneID:
134005861
NCBI-ProteinID:
XP_062300865
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Position
23:complement(13508932..13650929)
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AA seq
2242 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLVVEVLWPLFLFVILVWVRSTNKPIFKGQCHYPNKA
MPSAGVLPWLQGMICNIDNPCLDYPTPGETPGQVNNFNNSVISGMLIELQTLLVNRSFLS
KVQLLADDVDKWASVLSQSNPGNGQPVILRSILRDNETFSAHLKENLSVPPAVVQSLFAA
QIYVNPMTGILRPGELRSILCEGTGLDEYIQFSSQAEKRAFQNVSCSVTPQQLINTQQVL
LQNLDARKVLSELDATDTVTLIGKTTADAAPVIREVARLQSSTIFKAASSLDFREDMIGS
INMLLCGKKPDFNSTNLTLSLPSSRQTTNNMSASIMSNSSDPFCQALVDTLEGTPGLRYI
WSTFRPLLQGKVLYTPDTPAARLMVKEANSTFSALAMLKELADSWDELGPRVWDFFQNSP
QVNALRALLANPVFAAALNGRLNGTGWTPELLANFLYNGPPEDRPAGMPPNDWRNVYNST
TQILELLSKFLGCLDLNKFEAAANETHLVTKALELLKNDTYWAGIIFENLQPDSSQPPPY
VKYTIRMDVDEVERTNKVKDRSWSPGAGDNSFNDLRYIWGGFAYLQDMMDHGIIRTQTSK
NQTLGVFAQQMPYPCFVDDAFIQSIGGILPMFLVLAFMYTVCMTIKGLVYEKELRLKEVL
RAAGIQNGALWSSRFIENIVLLTVPCFLMSIMVKYGKVLQYSDPSVIFVFLLVFCVSTIT
QCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFGAKVAVSLLSCVAFGYGC
ENFAKYEEQGIGIQWSNIGKSPEEGERYTFIVSIIMMLFDAVFYWILTWYIENVFPGQYG
IPKPWYFPFTASYWCGTASVTDVDPGLLKDSSAHNEYLEKTPPNVKAGVSIRNLVKIYKT
GKKLAVDGLSVDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGLDIHTDMDS
IRKYLGMCPQHNVLFNELTVEEHIYFYARLKGCTRDEVKIEMDQMIKDVGLPHKRKELAK
NLSGGMQRKLSVAIAFAGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHHM
DEADILGDRIAIISQGKMRCCGSSLFLKKCFGSGYYLTLVRDGTEKMTAQRNGIIHNQAK
EEKDRPSRSSSPDDGIGSQSWANSDPSDLTAVGQLVRRHVPQAVFLENIGQEITYILPYG
GARDGTFALLFHELDLALADLGLTSYGISDTTLEEIFLKVAEDTGVDAEISTTKELLVRD
CKRSSRESKRNSITSVQTKTEISGLSDLKEKFASKVGDFKRNTSVNGRGSAVITGWELIR
RQFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLSLIFSLIVPPFAEYPSLELQPWMYGL
PQTTFYSNDGPDNVEVSHVVETLVNNPGFGTRCMTGDPIPKLPCTSSGSEWVTPPVDQSV
IDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCPLGAGGLPSPQRIQNTTDTLLNLTGRNM
SDILIKTFEHSGKTRYGGISVGGVNSQVRLTEAGIEAAFRDLKDLFSSSQDNVTDQIIQN
AETLLKKLGTRDNVKVWFYNRAWHGMVSFLSVANNAILRGNLPAGQDPRQYGISVSNHPL
NLTKQQLSYVAMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVNPA
VYWLSNFVWDMCNYIIPCLIVIVIFLCFQQKSYVSPPNLPALVLLLILYGFAITPMMYPA
SFIFSVPSTAYVVLTCINLFIGINGSVATFVMELFDDDNVSHINDIVKQVLLIFPHFCLG
RGLIDMAKNQAMATLFSSFGEDRFKDPLSWDMVGKNLCAMSIQGVVMFAITILIQYKFFC
KPRLISAKSLSAEEEDIDVARERERVYEGRTQNDLLRIYDLTKVYPRKSTPAVDRLCVGV
PAAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAFLNGYSIRTEMRDVHQNLGYCPQFDA
IDDLLTGREHLEFYARLRGVPEKEVTMVAEWGVQKLGLVKYSNKSAGTYSGGNKRKLSTA
MALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMAI
MVNGRFKCLGSIQHLKSRFGDGYTVIVRVGGTPPALKPVEDFVQLTFPGSTLTEKHHNTL
KYQFPYTQGALANIFSHFTNHQQGLGVEDYSVSQTTLDQVFVNFARLQHGEEDTQAYDNP
VDTSDEVPMKSVRTSTEVSERV
NT seq
6729 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttcactctgctcctgtggaagaacttcactctccggaagaga
caaaaggtccgattggtggttgaagtgctctggcctctgttcctcttcgtcatactggtg
tgggtgcggtctacaaacaaaccaattttcaaaggccaatgtcactaccccaataaagcc
atgccgtcggctggcgtgctgccctggcttcaaggtatgatttgtaacatcgacaatccc
tgtttggactatccaacgccaggggagacaccaggccaagtcaacaacttcaacaactcc
gtaatttctggaatgttgattgagctacaaaccctcctggtaaacagatcttttctcagc
aaggtgcaattactggcagatgatgtcgacaagtgggcttcagtcctgtcacagtctaac
cctggtaatggtcaaccagtgatcctgaggagtatcctaagagacaatgaaacgttctcc
gcacatctgaaagagaatttgtcggtgccaccagcagtggtccaaagcctcttcgctgct
cagatttatgtcaatccaatgacaggcatcctgagaccaggtgaactgaggagcatcctg
tgtgaggggacaggtctggatgagtacatccaatttagcagccaagctgaaaagagggct
tttcaaaatgtcagctgctccgtcactccacagcagctgattaacacccagcaagtactc
ctgcaaaacctggacgcgaggaaagtgctttccgagctggatgcgactgacacagtgaca
ctgattgggaaaaccactgcagatgcagcaccagtgattcgtgaggtggcaaggttgcag
agctccacaatctttaaggctgctagttcattggatttccgagaggacatgattggcagc
atcaatatgctactgtgtggaaagaagcctgacttcaattctactaatttgaccctgagt
ttaccctcatctagacagacaactaacaacatgtcagcctccattatgagcaacagttcc
gatcctttttgtcaagctctcgttgacaccctggagggcacacctggtttgcgctacatt
tggagcactttcaggccgttactgcaagggaaagtcctctacacacctgatacacctgct
gctcgcctcatggtgaaagaggcaaacagcactttcagtgctttggctatgttaaaagaa
ctggctgattcatgggacgaacttgggccacgcgtctgggatttctttcagaatagcccc
caagtcaatgcattacgggctttgctggcgaatccagtgtttgctgctgccctcaacggg
cgtctcaacggcacaggatggacaccagagctgcttgccaacttcctgtacaacgggcct
ccagaggatcgtccagccggcatgccgcccaatgactggcgcaatgtttacaacagcact
acccaaatcctggagcttctctccaagttccttggttgtttagacctgaacaagtttgag
gcagctgccaatgaaacccatctggtgaccaaagccttggaacttctgaagaatgatacg
tactgggccggcattatctttgaaaacctccagccagactccagccagccccctccttat
gtcaagtacacaatccgcatggacgtcgatgaggtagaacgcaccaacaaagtgaaagac
aggtcatggtctcctggggccggagacaattcctttaacgacctgcgctatatatgggga
ggctttgcctacctgcaggatatgatggaccacggcattatacgaacacaaacgtcaaag
aaccaaacgcttggtgtttttgctcagcaaatgccatacccctgcttcgtggatgatgct
ttcatccagagtattggaggcatccttcccatgttcctggttctggccttcatgtacact
gtgtgtatgaccatcaaaggcctggtgtacgagaaggagctgcggctcaaggaagtgctg
cgtgctgctggcattcaaaacggtgccctttggtcttcaaggttcatagagaacattgtt
ctgctcacagttccctgtttcctcatgagtatcatggttaagtacggcaaagtcctgcaa
tatagcgacccctcggtaatctttgtcttcctgctggtgttctgcgtgtccaccatcact
cagtgcttcttcattagcgtcttcttctccaaggccaacttagcggccgcgtgcggtggc
ctcatctactttgtcctctacctgccgcacatcctttgctacgcctggagggacgtcatg
ggtttcggggccaaggttgctgtgagtttattgtcatgcgtggctttcggctacggctgt
gagaactttgccaagtacgaggagcaaggcatcggtattcagtggtccaacatcggcaag
agtccagaagagggggagcgctacaccttcattgtgtccatcatcatgatgctgtttgat
gctgtgttctactggattctcacctggtacattgaaaacgtctttccaggccaatatgga
atccctaagccgtggtacttccctttcactgcgtcttattggtgtgggaccgcctcagtg
actgacgttgacccaggtttgctgaaggactccagtgcacataatgaatatctggagaag
acgccacccaatgtgaaagccggggtatcgatccgcaatcttgtcaaaatctacaagact
gggaagaaacttgctgtggacggcctgagtgttgacttctatgagaatcagatcacatct
tttcttggccataacggagctggaaaaacaaccacaatgtcaattctaacaggactcttc
ccgcccacatctggaaccgccctcatcaacggacttgacatccacaccgacatggacagc
attcggaagtacttgggaatgtgcccacagcacaatgtcttattcaatgagctgactgtg
gaggagcacatctacttctacgccaggctgaaaggatgcacccgtgacgaagtgaaaatc
gaaatggaccagatgattaaggatgttggtttaccacataagcgcaaggaacttgctaag
aacctgtcaggtgggatgcagaggaagctgtccgtggctatagcatttgccggcggatca
aaaattgtcatcttagatgaacctacagcaggagtggacccctatgcccgcaggggtatc
tgggaactgctgttaaagtacaaacaaggtcgcaccatcattttgtctacacaccacatg
gacgaggcagacatcttaggtgatcgtattgccatcatctcccaggggaaaatgcgctgc
tgcggctcctcgctcttcctaaagaagtgttttggaagcggctactacctcactctggtc
agagatgggactgaaaagatgacagctcagcgtaatggtatcatacacaatcaagccaaa
gaggaaaaagatcgtccttcgaggagcagcagcccagatgacggcattggcagccaaagc
tgggccaactctgatccctcagatttgacagcagtgggtcaacttgtgcggcgccatgtc
cctcaggctgtcttcttggagaacatcggtcaggagatcacctacatactgccctatgga
ggagccagagatgggacctttgcccttctcttccacgaacttgacctggccctagctgac
ctcggcctgaccagctacggcatctctgacacgacactggaggagatatttcttaaggtg
gcagaagatactggcgtggatgcagagatttcaacaacaaaggagctgttggtgagagac
tgcaaaaggagctctcgcgaatccaagcggaacagcatcaccagcgtccagactaaaaca
gaaatctctggattgagtgatttaaaagaaaagttcgccagtaaagtgggtgactttaag
aggaacaccagtgtcaatgggaggggctctgcggtcatcacaggatgggagctgatcagg
aggcagttcctggcgctctttatcaagcgcttccatcacgcccgcaggagccgcaaggga
ctcattgcccaggtggtcctgcctgctgtttttgtgtgcctgtctctgatcttctcactc
atcgttccaccatttgccgaatatccaagtctggagctacaaccctggatgtatggtctc
cctcaaactaccttttacagcaacgatgggccggataatgtggaggtgtcccacgtggtg
gaaaccttggtgaacaaccctggttttgggactcgctgcatgactggagatccaataccg
aagctaccgtgtacctccagcgggtctgaatgggtcactccacctgtggaccagtcagtg
attgacatcttcctcaacggaaattggagcatgtcgaacccctccccctcctgtcaatgc
agcactcctaaacggacaatcatgttacccgactgtccgctcggcgctggagggctccct
tcacctcagaggatccagaacacaacagacacactgctgaatttaactggacggaatatg
tcagacatcttgatcaagacatttgagcactcaggaaaaacaaggtatggagggatctct
gtcggaggagtcaactcccaggtccgtctgactgaggcaggaatcgaagctgcattcagg
gatctaaaagacctattcagttcatctcaggataatgtgactgatcagatcatccagaat
gctgagactctgctgaagaagctgggaaccagggacaacgtaaaggtgtggttctacaac
cgggcttggcacggcatggtgtccttcctcagtgtggccaacaacgccatcctgagagga
aatctgccagcaggacaggatccccgccagtatggcatctctgtctccaatcacccgctc
aacctcaccaagcagcagctctcctatgtggccatggccacaacctcgactgacgtggtg
gtgtccatctgcgttatctttgccatgtccttcatccctgccagctttgtcctcttcctc
atccaagagagggtgaacaaagccaagcatctgcaatttgtcagtggagtaaacccagct
gtctactggctgtctaattttgtctgggacatgtgcaactacatcatcccatgcttgatt
gtgattgtgatcttcctctgcttccaacaaaaatcctacgtttccccacctaacctgcct
gctttggtcctcctcctaattttgtatgggtttgccatcactcccatgatgtaccccgcc
tccttcatcttcagcgtgcccagcacagcctatgtggtgctgacctgtataaacctcttc
atcggtattaacggcagcgtggccaccttcgttatggagctatttgatgatgataatgtc
tcccacatcaacgacatagtgaagcaggtgctgctgatattcccgcatttctgtctgggc
cgagggctaattgacatggcaaagaaccaggcgatggccacactcttcagcagttttggg
gaggaccgatttaaggacccgcttagctgggatatggtgggaaagaacctttgcgccatg
tccattcagggagttgtcatgtttgccatcacaatcctcattcagtataaattcttctgc
aaaccaaggcttatttcagcaaagtcattatctgcggaggaagaggatatcgatgttgct
cgggaacgtgagcgggtgtatgagggcaggacccaaaacgaccttctgaggatctatgat
ctgactaaggtataccctcggaagagcacccctgctgtggacaggctatgtgtgggcgta
cctgccgcagagtgtttcggcttgttgggaatcaacggggctgggaaaaccaccacgttc
aaaatgctgacaggagacatcccagtctccggtggagaggccttcctaaatggatacagc
atacgcacagaaatgagagacgtgcaccagaacctgggctattgtccccagtttgatgct
attgatgatctgctgaccggacgagagcatctggagttttatgccaggttacgaggggtt
ccagaaaaagaggtcaccatggtggcagagtggggggtccagaagttggggctggtcaaa
tattccaacaagtcagcaggtacatacagcggcgggaacaaacgaaagctttctacagca
atggccttgatcggctgtcctccggtcatcttcctggatgaaccaaccactggcatggac
cccaaagcccgtcgcttcctatgggactgcatcctgagtgtcatcaaagagggacgctct
gtcattctcacgtcacacagtatggaggagtgtgaagcattgtgcactcgcatggccatc
atggttaacggacgcttcaagtgtctagggagcatccagcatctgaagagcaggtttggt
gatggctacacagtgattgtaagagttggtggcactcctcctgccttgaagccggttgag
gactttgtccaactgaccttcccgggcagcaccctgacagagaagcatcacaacacactg
aaatatcagttcccatacacacagggagctttggccaacatcttcagccacttcaccaac
catcaacaggggctgggcgtggaagattactctgtgtcccagaccactctggatcaggtc
ttcgtgaattttgcacggctccagcatggggaggaggacactcaggcctatgacaacccg
gtggacacctcagatgaagtgccaatgaagtctgtgaggacctccacagaagtgtcagag
agagtgtaa
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integrated database retrieval system
