KEGG   Scomber scombrus (Atlantic mackerel): 134005898
Entry
134005898         CDS       T10651                                 
Name
(RefSeq) WD repeat-containing protein 82-like
  KO
K14962  COMPASS component SWD2
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    134005898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssco03019]
    134005898
   03036 Chromosome and associated proteins [BR:ssco03036]
    134005898
Messenger RNA biogenesis [BR:ssco03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     134005898
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     134005898
    COMPASS/SET1 complex (yeast)
     134005898
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st VPS8_N Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 134005898
NCBI-ProteinID: XP_062300913
LinkDB
Position
3:complement(17930162..17934191)
AA seq 315 aa
MKITDSVLRSFRVARTYRENSQKVNCVDYSPNGENAISSSDDDCIVLYDIREGKPSRTLF
SKKYGADLIRFTHGDAQTVVYSSNKLDDTIRYLSLSDNKYIRYFPGHTARVIALSMSPVD
DMFISGSLDKTIRIWDLRSPNCQGLTNPLGKPVCSFDPDGLIFAAGVESQAIKLYDLRAF
DKGPFASFDMRLNRVCEWTGLKFSNDGKQILISTNGGMICVLNAFNGSVLHTFSGYNNSK
GISLEACFTPDSQFVMIGSEDGRVHVWSTESGMKVAVLDGKHSGPINTLQFNPRYLTFAS
ACTNMTFWLPCVDDL
NT seq 948 nt   +upstreamnt  +downstreamnt
atgaagatcacagacagcgtgctgcggagtttcagggttgcgaggacatatcgagaaaat
tcacagaaagtcaattgtgtggattacagcccaaatggtgaaaatgcaatatcaagcagc
gacgacgactgcattgtgttatatgacatccgagaaggaaagccctcacggaccttattc
agtaaaaagtatggagcagacctgatccgcttcacacatggagatgcacagacggtggtc
tacagctccaacaagctggatgatacaatccgttacctgtcactgagtgacaacaagtac
atcagatatttccccggtcacactgcaagggttattgctctctccatgtcaccagtggat
gatatgtttatctcaggctcgttggataagacgatccggatctgggatctgcgctctcca
aactgtcagggtctgacaaatccactggggaaacctgtttgttcctttgaccctgatgga
ctgatttttgctgcaggagttgaatcgcaggccataaaattgtatgaccttcgtgctttt
gacaagggtccgtttgcctcctttgacatgaggctgaatcgggtctgtgagtggactgga
ctcaaattcagcaacgatgggaaacagattctcatctctaccaatggagggatgatttgt
gtccttaacgctttcaatggatctgtgctgcacactttttctggctacaacaacagtaaa
ggtatatctctggaagcatgcttcactcccgactcacagttcgtcatgattggctcagag
gatgggagagtccatgtttggagcactgagagtgggatgaaggtggctgtgctggatggg
aaacattcaggacccataaacaccttgcagtttaaccccagatacctgacttttgctagt
gcctgcactaacatgacattttggctcccgtgtgttgatgacttatag

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