Scomber scombrus (Atlantic mackerel): 134005911
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Entry
134005911 CDS
T10651
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134005911 (col4a5)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134005911 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134005911
NCBI-ProteinID:
XP_062300927
LinkDB
All DBs
Position
23:complement(5696918..5749896)
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AA seq
1686 aa
AA seq
DB search
MNKDLNSLRQLSVALLFFALCVGVQRSNSAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGPRGEKGSDGPYGLGGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
RGTPGCNGTKGDRGFAGTSGIPGSQGRQGPPGLPGQKGDPGDVIATNIFGEKGAVGLPGL
PGTPGAPGPAGYQGPIGPAGPRGYEGPPGPPGLPGPKGNMGLNFQGPKGDKGETGLPGPP
GPPGQVGEQKRQPETQIQRGDKGDPGIPGPSGDPGYPGPPGPSGGQKGEKGELGEAGKRG
KPGKDGDPGTPGFPGVKGESGQPGPPGRDGDRGLKGDRGYPGPPGVVGGNGGGRVGPKGE
PGFPGNPGIKGDRGPTGLSGPPGVPGLPASGGSGGPGSPGYPGERGQKGDPGAPGLSLPG
SPGRPGGQGLQGPSGPPGPPGYSSAGNCLPGEPGRPGVQGDRGYPGETGQKGDKGDTCVN
CFGGTSGIPGPQGPAGKPGFPGSPGSPGTKGDRGFPGTPGSSGPAGSPGSQGSPGFPGEK
GDPGDAVTVSGGRGDKGDTGFPGSPGLPGLDGRPGRDGQPGNPGPKGASGSLRVKGEIGP
PGVSGSPGLPGDRGPPGTPGFGPQGPSGEKGIQGVSGRPGSSGAPGAKGEPGLTIAEKGL
PGPTGQDGDPGLPGGPGSPGQPGQPGFPGSPGSKGEPGLPGIGLPGQPGSKGFPGIPGQP
GSPGGPGRPGVDGLPGQPGFPGGKGEPGFGLNGPPGLPGVPGGKGIPGPKGDSGLPGGPG
SPGRSGFDGGPGPKGDSGLPGISGARGPPGSPSPGSVGSPGSTGPPGPMGPPGFPGSNGE
KGDAGGPGLDVPGQPGDRGSPGFPGSPGPVGSPGSPGGSGRDGLPGLPGTKGDMGQMGAP
GPSGGPGGPGGPGGPGIKGDSGFPGRDGTPGGPGSKGERGDPGLQGPPGPAQSPVALKGA
KGDSGLPGSPGFPGQKGIAGVPGDSGVPGSDGRPGLPGPSGPKGDAGIPGSPGGPGATGL
KGSMGEIGFPGPSGQKGLSGQSGRSGAPGLPGAPGFPGAKGDPGSAGVGAPGQAGAKGEP
GQPGFPGSPGLKGGPGSSGLPGLPGGPGTKGDPGLPGFQGSPGIPGPKGLDGGPGAPGLS
GAPGRPGESGRPGGPGFPGDKGQPGRDGIPGPAGVKGDPGPPGYGGPGAPGSPGFPGAKG
DPGLPGPSGSPGFPGSKGDNGFPGLPGASGNSGPPGPPGLALQGPKGLQGPPGPPGRSGP
PGLQGGPGPDGPRGQPGSGGIKGEKGIAGAPGQPGFPGQKGDLGNPGFSGPSGIPGGPGS
KGDIGLPGVPGFPGPKGDSGIPGSSGLPGDPGDVGLPGPQGDPGVSPAPIVVKGERGPPG
PLGQPGGPGSPGAPGRDGSPGQAGDPGDSGPEGPPGFSGPPGRKGDNGPSGQPGAPGYPG
PPGSDGPQGPPGPPGSVSAAHGFLITRHSQGSDVPFCPDGTGLVYDGYSLLYVQGNERAH
GQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAPITGEGIKP
FISRCAVCEAPAMVIAVHSQTIQIPTCPANWAPLWIGYSFMMHTSAGAEGSGQALASPGS
CLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVESNEMFRKPQSETLKAGNLRTRVSRCT
VCMKRT
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaacagcctgcgacagctctccgtggcgctgctcttcttcgccctg
tgcgtcggggtgcagcgatccaactcagcggcttgccatggatgtgtgggatccaaatgt
gactgcagtggcgtaaaaggaaccaagggtgagaggggtttcccaggtctcaccggacag
ccaggcgtcccagggttccccggaccagaggggccgatcggacccagaggagaaaaggga
agtgatggaccttatggactaggtggtccaaaaggaataagaggacctccaggtttgcca
ggatttccaggaacaccaggacttccaggtctgccagggcaagatggacctccaggccca
agaggaacaccaggttgcaatgggacaaagggtgaccgaggtttcgcaggaacttcagga
atccctggatcgcaaggacggcagggtccacctggtctgccaggacaaaagggagaccca
ggtgatgtgattgccacaaacatttttggagaaaaaggagcagtgggattacctggattg
ccaggaactcctggcgctccaggacccgctgggtatcaaggtccaattggccctgcagga
cccagaggctatgagggccctccaggtcctcccggtcttccaggacctaaaggaaacatg
ggattgaacttccaaggacccaaaggagataagggtgagactggtttgccaggacctccc
ggccctccagggcaggttggggaacagaagagacagcctgagacacagatccagagagga
gacaagggtgacccaggaattcccggaccgtcaggtgatccaggctatccaggaccacct
ggtccctccggtggccagaaaggagaaaaaggagaactaggagaagctggcaaacggggc
aaaccaggcaaagacggtgaccccggtactccaggcttccccggagtcaaaggagagtca
ggccagccaggtcctccaggcagggatggcgatagaggactaaaaggtgaccgtggatac
ccaggacccccaggagtggttggtgggaacgggggaggtcgggttggtcctaaaggtgag
cccgggttcccaggaaacccaggaatcaaaggagatagaggaccaacaggtttatcagga
cctccaggagtgccagggcttccagcatctggtggcagtggtgggcctggatctccaggc
tacccaggagagagaggtcagaagggagaccctggcgctccaggactctcccttccaggt
tcccctggtcgtccaggaggtcaaggactccaaggtccatctgggccccctggacctccc
ggctattcctctgcaggaaactgccttcctggagagcctgggcgtcctggcgtgcaagga
gatagaggttacccaggagaaacgggtcagaaaggtgataaaggcgacacctgtgtgaac
tgctttggtggcaccagtggcatccctggaccccaaggacctgcaggaaagcctggattc
ccaggatctcctggcagcccaggtactaagggagacagaggattcccaggaacacctggt
tcatctggccccgctggttcccccggttctcaaggttctccgggattccctggagagaag
ggagacccaggcgatgcagtcactgtcagcggtgggaggggagacaagggtgacactggc
ttccctggatcaccgggtctgccaggtctggacggtcgacctggtcgcgatggacaacct
ggaaatcctggaccaaaaggagcttctggctctttgcgggtgaaaggagagatagggccc
cccggtgtgtcaggttctccagggctgccaggagacaggggtcctccaggtacccctggt
tttggacctcagggaccttcaggagagaagggtatccagggcgtttcaggaagacccgga
tcgtctggtgcacctggtgctaaaggtgagccaggtctgacgatagcagagaaaggcctg
ccaggacccacaggacaggatggcgatccaggactgcccggtggaccaggtagcccaggt
cagcccgggcagcctggtttccctggatcaccaggatcaaagggtgaacctggactccca
gggatcggactcccaggacaaccaggatctaaaggattcccaggtatccctggccagcca
ggaagcccaggaggaccaggcagacctggagtggacggcctccccggccagcctggattc
cccggaggcaagggtgaacctggctttggactcaatggtcctcccggtttaccaggagta
cccggtggtaaaggaatacctggaccaaagggagattctggtctccctggtggccctgga
tcaccagggcgatctggatttgatggtggcccaggacctaaaggtgactccggtttacct
ggtatttctggagctcgtggcccacctggatctccctctcctggttcagttgggtcccca
ggctccactggaccgccaggcccaatgggtccaccaggtttcccaggatcaaatggagag
aagggagacgccggtggtccaggtttagatgtcccaggacagccaggagacagaggaagt
ccaggtttcccaggttccccaggaccagttggttcccctggatcccctggaggatctgga
cgggatggtctgcctggactaccaggtaccaaaggagacatgggtcaaatgggagctcca
ggacctagtggaggacccggtggccctggaggaccaggtggtccaggaattaaaggtgac
tctggattcccaggtagggatggcacgcccggtggcccaggttctaaaggagagaggggt
gaccctggtctccagggacctccaggacccgctcagtcaccagtggccttgaagggagcc
aaaggagactcaggactaccaggttcaccaggttttccaggtcagaaaggtattgctggt
gtccccggtgactctggagtgccaggatcagatggacgtcctggacttcctggaccatca
ggtcctaagggagatgctggcatcccaggatccccaggaggtcctggagctacgggactg
aaaggcagtatgggagaaataggatttccaggaccgtctgggcagaagggtttatcaggt
cagtcaggtcggtcaggagccccaggactgccaggagcacctggtttccctggagccaaa
ggtgatccaggtagtgctggagttggagcaccagggcaagcaggagccaagggtgagcca
ggccagccagggttcccaggaagtccaggactgaaaggaggtccaggatcatctggtctc
ccaggtttaccaggaggaccaggaaccaaaggcgaccctggcctcccaggattccaaggt
tctcctggtattcctggtcctaagggtcttgatggtggacccggtgccccaggtctcagt
ggagctcctggtagaccaggagagtctggccgaccaggaggaccagggttcccaggagac
aagggtcagccaggtcgggatgggatcccaggaccggctggagtcaaaggagacccaggg
cctcctggttacggtggtccaggtgcccctgggtctccaggatttccaggtgctaaggga
gacccaggtcttcctggcccatccggcagccctggtttccccggttcaaaaggagacaat
ggcttccctggcctacctggtgcttcaggcaacagtggccctcctgggcctcccggactg
gctctgcaaggccccaaaggactccaaggacctccaggaccacctggaagatccggtccc
ccaggtcttcaaggtggacccggcccagatggtcctcgtggacagccaggaagtggcggc
atcaagggagaaaagggtattgcaggcgctcccggacagccgggtttccctggacagaag
ggagatcttggtaatccaggattctcgggtccctctggtattcctggtggccctggttcg
aagggagacatcggtctgcctggcgttcccggattccctggaccgaagggagactcagga
attccaggatctagcggccttcctggagatcctggtgatgtcggacttcctggacctcaa
ggtgatcctggtgtatctccagcccctattgtggtgaaaggagaacgaggaccccccggt
cctttaggccagcctggtggaccgggatcacctggcgcccctggacgtgatggtagccca
ggtcaggctggtgatcctggagactctggtccagagggtccccctggattcagcggccca
ccaggcaggaagggagacaatggaccctccggtcagcctggtgcacctggctaccctggt
ccccctggttcagacggcccacagggtcctcccggtcctccaggatcagtttcagcagcc
cacggcttcctcatcacccgacatagtcagggttcggatgtgccattctgtcctgatggt
actggcctagtctacgacggatactcgctgctgtacgtgcagggcaatgagagggcacac
ggacaggaccttggcacggccggcagctgtctgcgcaggtttagcaccatgcccttcatg
ttctgcaatatcaacaacgtctgcaacttcgcctcccgcaacgactactcctactggctg
tctacaccccagcccatgcccatgtccatggcccccatcactggagagggcatcaagcct
ttcatcagcaggtgtgcagtgtgtgaagctccagccatggtgattgcagtccacagtcaa
accatccagattcccacttgccctgcgaactgggcgcctctgtggataggatactctttc
atgatgcacaccagtgcaggtgcggagggctctggccaggccctggcctcccccggttcc
tgcctggaagagttccgcagcgctcccttcatagagtgccacggcagggggacatgcaac
tactacggcaactcctacagcttctggctggccactgtagaatccaatgagatgttcagg
aagccccagtcggagactctgaaggcgggtaacctacggacgcgggtcagccgttgcacg
gtctgcatgaagaggacgtaa
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