Scomber scombrus (Atlantic mackerel): 134006048
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Entry
134006048 CDS
T10651
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134006048 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
134006048 (acin1b)
03015 mRNA surveillance pathway
134006048 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134006048 (acin1b)
03041 Spliceosome [BR:
ssco03041
]
134006048 (acin1b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134006048 (acin1b)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
EJC/TREX
134006048 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
Motif
Other DBs
NCBI-GeneID:
134006048
NCBI-ProteinID:
XP_062301097
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All DBs
Position
23:10244699..10267494
Genome browser
AA seq
1185 aa
AA seq
DB search
MADEDITLDGKPLQSLRVADLKTALEQRNLPKSGQKNTLIKRLKGALMLENLQKSSSSHS
GLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAQQEEEADESPAVPEEDEDHSEDN
ESSSYPDKHHPKISQPSLTRTEERGGGSMMGHGKMACGPDVGPAPTMQRASFHQGHKEPP
APSPPRAVASLSVRVLGQPDRQGLPPAVSRAQEKEGTAPIEPGSAHPVLHLSRSAGVVSG
GRVQEDSNEDDDGDDESEDDDDWGPGPGPGGARKGNRVPPPPQQMPPSGPAASARSKRKL
QPPQHIPPPQVLETPMQLRHPTPPPSPPPNLFPLPDTPKQSPPDNQEGEDPRAASVPPST
MQRQDSESSSGSSSPEPPVKRKPGPLSLLVHKMESEGAFRAGETTSAVTVSGEAAHSSTG
SVMSVAATAPIESPLQILERKRQQENKELEEERRLAEKRERERQKEQEEERKKEESEREK
KRLEEEKEKERKRLEEEEERRKKRQLEEEREKRQQAANRERMAKTEAQDSGSSSDSDSKS
DSSSSQSSSSAGEKPRPARQLKKTDQGREPDDEKKTKLSKGAEREHLTKREVSEPSAAAV
TEVEPDSESSMAQQPASGAEPDNNSNEGRLEESTTPKAFAARKISLTSSKTSPATTEGAA
GESETGTAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIKVSQEAVVELHPEELQLS
GDEESLDANRGDQDKGLKIRRTVTQVVPGDGQENGQANEEEEVEKTEREIQRRTSKDKRK
NSVSEEASETQVSVKVEGEAKKVTPSDSLVRRSISQQKSGVSVTIDDPVRTNKQPSPPRG
KVSNIIHVTNLVRPFTLGQLKELLNQTGSVVEDGFWIDKIKSHCFVTYATTEEAVSTRAV
LHGVKWPQSNPKVLNVDFCEQEEVDFHKGILKPVKEEERVPQPGAPQNRLPPLMPERDKE
RERDRVVDRERDRDSVRGVVGVRDLWAEREREMERRERARGEREWDRDKVREFARPGEEE
RRSRSRDRERRRRERGKSKERKTEKKEKGDEPPAKLLDDLFLKTKAAPCIYWLPLTEEQA
AQRVLDRSERQKERERRRKEQQEEEKKREEEKREERLKTREKEGGVTASGGGAGRGADGD
RERERGRDREADKRRDGGNRPRRPSTGTGSGRRSRSRSNPRDRRR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatattacgcttgatggaaaacctctacaatcgctccgagtcgcggat
ttaaaaaccgccctggagcaaagaaacctgccgaaaagcgggcagaaaaacacactcatt
aagcgactgaaaggggctctgatgctcgaaaacctgcagaagtcgtcctcctctcacagt
gggctgcagcccaactctcagataggggaggagatgagccagaatagcttcataaaacag
tacctggccaagcagcaggagctccttcgacagagacttgagagagaggcccagcaagag
gaagaggctgatgaaagcccagcagtgccggaagaggatgaagaccactcggaggacaat
gagagctcttcctatcctgacaagcatcatcccaaaatctctcagccctcactcaccagg
acggaggagaggggaggaggatcaatgatgggtcatgggaagatggcatgtgggcctgat
gtgggtcctgctccaaccatgcagcgagcctcctttcatcaaggacacaaggagccaccg
gccccgtctcctccccgcgccgtagcctccctgtcagtgcgcgtcctgggccagcctgac
cgccaggggctgccccctgccgtgtcccgagcccaggagaaggagggcaccgcgcccatc
gagcccggctcggcccatcctgtcctccacctcagccgatcagccggcgtcgtgtccgga
ggtcgtgtccaggaggacagcaatgaagatgacgacggtgatgacgagagcgaggatgat
gatgattgggggcctggtcccggtcccggcggggcacgaaaaggcaacagagttcctcct
ccaccgcaacagatgccccctagtggcccagcggcaagcgcaagatccaaacgcaagctt
cagcctccgcagcacatcccaccaccgcaggtactcgagacccctatgcagctgcgccac
cccactcctcctccctctccaccacccaacctgttccccctccccgacactcccaagcag
agtcccccagacaaccaggagggagaagacccaagggctgcatctgtcccaccttccacc
atgcagaggcaggactctgaatccagctccggttccagcagtcctgagccgcctgtgaag
cgcaaaccaggacccctttctctgctggtccacaagatggaatcagagggggctttccgg
gcaggcgagaccacctcagctgtgactgtgtccggagaggccgcacactccagtaccggg
tctgtcatgtcagtggcagccacagcacccattgaatctccgctgcaaatactggagaga
aagaggcaacaggagaacaaagagctggaggaagagaggcgactggcggagaagagagag
agggaacgacagaaagagcaggaggaagaacgaaagaaagaggagagcgagagagagaag
aaacgtttggaagaggagaaggaaaaggagaggaaacgactcgaggaagaggaggagaga
agaaagaaaagacagctggaggaggagcgggagaagagacagcaggcggccaacagagaa
cgaatggctaagaccgaggcccaagattcaggttcctcatctgattctgactccaaatcc
gactcttcatcatctcaatcgtcttcctccgccggggagaaacctcgtcctgccaggcag
ctgaagaaaactgatcagggacgagagccagatgatgagaaaaagacgaagctgagtaaa
ggggcggagagagaacacctcacaaaaagggaggtgtcagagcccagcgcagccgccgtg
accgaggtggaaccagactccgagagctccatggcccagcagccggcctccggagctgag
ccggacaacaacagcaacgagggtcgcctggaggagagcaccactcctaaggctttcgct
gctcgcaagatatccctgaccagcagcaagacgtctccggccaccacagaaggagcagca
ggagagtccgagacggggactgcagcagggaggaagaggcgatggggctccagcacggcc
gtcaccgctaagaaaccatccatcagcatcaccaccgactcactgaagtctttgatccca
gacatcaaagtaagccaggaggcagtggtggagctgcacccagaggagctgcagctgtct
ggggacgaggagagtctggacgccaaccggggcgaccaggacaagggcctcaagatccga
cgcacagtcacacaggtggtcccgggtgacggccaggagaatggacaggccaacgaagag
gaagaagtggagaaaaccgagagagagatacagcgcaggacttccaaagacaaaaggaag
aacagcgtgtcagaggaagcctcggaaacacaggtgtctgtcaaagttgagggagaagca
aagaaagtcacccccagcgacagtctggtgcgtcgctcaatcagtcagcagaagtctggc
gtgtccgtcaccatcgacgaccccgtccgcacaaacaagcagccctcgccacctcgtggc
aaagtctcaaatatcatccatgtgaccaatctggtacgacccttcacgctgggccagctc
aaagagctgctgaaccagacgggcagcgtggtggaagacggcttctggatcgacaagatc
aagtctcactgcttcgtcacatacgccacgacagaggaggcggtgtccaccagagctgtt
ctccacggagtcaaatggcctcagagcaatcccaaagtcctcaacgtggacttctgtgaa
caggaagaggttgactttcacaaagggatcctgaaaccagtcaaagaagaggaacgtgtc
ccgcagcctggcgctccccagaaccggctgcccccactcatgcccgagcgggacaaagag
cgcgagcgggacagagtcgtggacagggaacgagaccgcgactctgtccgaggcgtggtg
ggagtgcgggatctgtgggcggagcgagagagggagatggaacgccgcgaacgggcccgc
ggagaacgggagtgggaccgggataaggtccgggagttcgccagacccggtgaggaagag
cggcgctctcgatccagagatagagagcggaggaggagggagaggggcaagagcaaggag
aggaagaccgaaaagaaggagaagggagatgaacctccggcgaagctgctggacgacttg
ttcctgaagaccaaagcggctccgtgtatatactggctccccctcactgaggagcaggcg
gcgcagagggttttggaccgctccgagcggcaaaaggagcgcgagcgcaggcgcaaggag
cagcaagaagaggagaaaaagcgcgaggaggagaagagagaggagaggttgaaaacccgg
gagaaggaaggcggagtgacggcgagcggcggaggagccgggcgaggcgccgacggagac
cgagagagggagcgcggccgagaccgagaggcagacaagaggagggatggcggcaaccgg
cccagacgaccctccacgggcaccgggagcggacggcgatcccgtagccgtagcaacccc
agagacagacgccgctga
DBGET
integrated database retrieval system
