Scomber scombrus (Atlantic mackerel): 134006085
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Entry
134006085 CDS
T10651
Name
(RefSeq) uncharacterized protein LOC134006085
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134006085
03036 Chromosome and associated proteins [BR:
ssco03036
]
134006085
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ssco03037
]
134006085
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134006085
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134006085
UBL E3 ligases
134006085
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
134006085
Cilium and associated proteins [BR:
ssco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
134006085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
PWI_Topors
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
134006085
NCBI-ProteinID:
XP_062301132
LinkDB
All DBs
Position
23:complement(1185191..1193831)
Genome browser
AA seq
1648 aa
AA seq
DB search
MAPTRMKLRVRRRDNTAGSVQQPEEEEERRRESSGRSSRRKNTSNASTTAAAAAAAAAAT
AAAAASSSPPAASTSARAVLAAEEASPDSKCPICLDRFNNLAYLDRCLHRFCFPCIQEWS
HNKAECPLCKQPFASILHSVRAEDDFKEYTLRPPPANSSVAATVAMVAAMASAARSDHQM
RLMLRRHRVADGGEAATTRRRRRERGGRGGGGRRAAAAERAGVWEWYLDSPPLPLPPLPH
HPAVSPMVAEDSEEGEDVGQQRVSGGADMAERGVIFEGLTGLTGAVAPVASNDRASRRLM
SCLATRQRMQRLQREGGTVRRLRERETVAFRRALYRSGIRVRGVAGVSGNQGQQQRDITA
ESFRRTPSHLNRLRPWLRRELTVLYGAHGSLVDIVQRIIMARLARHGLEDTPTIEEELRP
FLLARTDHFLHELVSFARSPLSLDNYDLQAVYEPPSTTLELDGLSSSSDSSSVIAISEGE
EEERVGAAHDDVIQTGSCLSLSAWDDETPGPSYSTAEPSCSLASLSFSPAPHEAASEERG
EKREEDGEEECLIVGYKKPIAERTPELVQLSSDTEDDDKEKKEDSASNEKPAPLPYLPTI
PPSTSSACREEEEPPKEKDAEAAVLGAHACLWSGSSARSRDSVCTLSPATPGEVELQQET
ESWTDRKQAGGEAVKEKRRKKRKRQGREQSCERVRKSGTLYNPNRSIYPAMMRRHSHSPS
PFHTSAESGSPLPPSPPDSSWEFCCSPLTSSVSSPSLSSSSSSSPLLSSPLAQTPPPPSL
SPGDRSGEHHGEKPGGKRKYKSRHLDSSDKDPSWKPGGSRRREKRKERGEKESKKRDRGR
KRERARRDTHSGESSSRKRRDDRSPSVEIIYEGTIMSDAAQPPARKRRRKHRKPQHSSSP
VIITLDSDSSHDDANHKINSSSSSPLSSQQTVDFSDLPPLPLVHSAGVGGPMDADIGDLP
VDILDRGSDGSEMEPTSRSKAARRVGSDNSDLDVDVENVEESGSLLGCDDDDDDDKEPSS
VMHGLIRKAESKSTAGEKKAPPTVDGGTEAGVRVPTSDSHLLASILNELEGISAPKCDLS
SNFEPKYKPSFRDQCDGRQAETRLPSLGFPEEGRWCNDSRDQNQGFDLQTCRTAFPPPPP
LQRLKEDREVPAFLKQPLPVQSFKRNTPPPLKHKDAGSPHMSPISPDTDTTGVNSPADTN
TNISHVGSSFAAKDDQTIPPISTLKKHFTSALALRRDSASTSSAAAVDVHSSCNLETIEP
SSAASSTAGIHSTSHKSPVDIHSSSSGSNADCLPHFDFNSFPASQLHSSRVNTKEIPSSG
HKASSSSELHPMNSLSPVGFHSAKTGWSKERPAHTDSTSGGHRNKTISSNFCRVAPVDLN
PSSSVSADDTPAGSDVFSGANSDTSSPVCVSPVDYRTQNPSSPVDSHSSRNAANREKLSE
RLSPSTVPPMTPRGRSSPKSAVDLYPEGLKVSSVVNHEERSPRGHLPPTDLHSRSPLPPV
SFHSSSLVRTAIDGRLNHTALSSSPTEKTSLTSQGKCSSESEPIVESHSKLVHSTDSDSK
PHNHFDPSSYPQFPVDSRSKHRLPIGSQHEPQPSVDSHSKNFQLHTDNHVTSSPESVENQ
WSSSVDTQSPIDEHSTNSVWNTHTHSAT
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atggctcccacacggatgaaactgcgcgttcgtcgccgtgacaacacagcaggaagcgtc
cagcagccggaggaggaagaggagaggaggcgagagagcagcgggcgcagcagcaggagg
aagaacaccagcaatgcttcgactacagcagcagctgccgccgccgctgctgccgctacc
gccgctgccgctgcctcctcatctcctcccgccgcctccacctcggcgcgggcggttcta
gcagccgaagaggcgtcgccagactcgaaatgtccgatctgtctggaccgctttaacaac
ctggcgtatctggaccgctgccttcatcgcttctgcttcccgtgcatccaggaatggtcg
cacaacaaggccgagtgtccgctctgcaagcagccgttcgcctccatccttcactccgtc
cgcgccgaggacgacttcaaggagtacacgctgcggccgccgcccgccaacagcagcgtg
gccgccaccgtcgccatggtggcggcgatggcgtcggcagcgaggagcgaccaccagatg
aggctgatgctgaggaggcaccgcgtggccgacggaggggaggcggcgaccactaggagg
cgcaggagggagagaggggggaggggcgggggaggcaggagagctgcggcggcggagagg
gcaggcgtgtgggagtggtacctggactctcctcctcttcctctccctcctcttcctcac
caccccgccgtctctcccatggtggcggaggacagcgaggagggcgaggacgtggggcag
cagagggtgagcggcggggcggacatggcggagcgtggggtgatctttgagggtctgacg
gggttgacgggggcggtcgctcccgtggcgtcgaacgaccgggcgtcacggcgactcatg
agttgcctggcgacgaggcagcggatgcagcggctgcagcgcgaaggaggaacggtgcgg
aggctgagggagagagagacggtggcattccgccgagccctctaccgcagcgggatacgg
gtccgcggggttgccggggtcagcggtaaccaggggcaacagcagcgtgacatcacagca
gagagcttccgccggacgccctcccacctgaacaggctccgcccctggctgcggcgggag
ctcacggtgctgtacggcgcccacggctcgctggtcgacatcgtccagcgcatcatcatg
gcgcgcctcgcccgccacggcctggaagacacgcccaccattgaagaggagctgcgaccg
ttcctattggctcgcaccgaccacttcctgcacgagctagtcagcttcgcccgctcgcca
ctcagcctggacaactacgacctgcaggcggtgtacgagccgccctccaccacgctggag
ctcgacgggctgagcagctccagcgacagcagctccgtcatcgccatctccgagggcgag
gaggaggagcgagtcggcgccgcccacgatgacgtcatacaaacaggaagttgtctcagt
ctgtcggcctgggacgacgagacaccgggaccgtcgtactccacagccgagccgtcgtgt
tcgttggcgtcgctgtcgttcagcccggcgccgcacgaggcggccagtgaggagcgagga
gagaaacgtgaggaggacggcgaggaggagtgtctgatcgtcggctacaagaaaccaatc
gcagaacgaactccggagctggttcagctctcctccgacaccgaggatgacgacaaggag
aagaaggaggactccgcctccaacgagaagcccgcccccctcccatatttacccacaatc
cctccctccacatccagcgcctgcagggaggaagaggagccgccgaaggagaaagacgcg
gaggcggccgtgcttggcgctcacgcctgcttgtggtcgggcagctccgcgaggagtcgg
gactctgtgtgcacgctcagcccggcgacgcctggtgaggttgagctgcagcaggagacg
gaaagctggacggacaggaagcaggcaggcggcgaggcggtgaaagagaagcggaggaag
aagaggaagcggcaagggcgtgagcagagttgtgagcgggtgaggaagagcggcacgcta
tacaacccgaaccgctccatctatcccgccatgatgcgccgccactcacactcaccctcg
ccgttccacaccagcgcggagtccggctcgccgctgccgccgagcccgccagactccagc
tgggagttctgctgctctccgctcacctcctccgtctcctcaccctcactctcctcctcc
tcttcttcctcgcccctcctctcctccccactggcgcagacgccaccgccgccctcgctc
tcccccggcgaccgcagcggcgagcaccacggagagaaacccggcgggaagaggaagtac
aagagccgccacctggacagcagcgacaaagacccgagctggaagccgggaggcagccgg
cgccgcgagaagaggaaggagagaggagagaaggagagcaagaagagagacagaggaagg
aagagggagagagcgaggagggacacacacagcggagagagcagcagcaggaagcgccga
gacgaccgcagtccgagcgtcgagatcatctacgaaggaaccatcatgtccgacgccgcg
cagccgccggcacgcaaacgccgcaggaaacaccgcaaaccgcaacacagcagttctccg
gtcatcatcaccctcgacagcgacagcagccacgacgacgccaaccacaaaatcaacagc
agcagcagcagtccactcagcagccagcagaccgtcgacttctcagaccttcctcctctc
ccgttggtgcattcggccggcgtgggcgggcccatggacgcggacatcggcgatcttccc
gtcgacatcctggacagagggtctgacgggtcggagatggagccgacaagccgatctaag
gctgcacgtcgcgttggcagcgacaacagcgatctagacgtggacgtggaaaacgttgag
gagagcggttcgctgctgggatgcgacgatgatgacgatgatgataaagaaccgtcgtct
gtgatgcatggactaataagaaaggccgaatcaaagtcgaccgcaggggagaaaaaagca
cctccgactgtagatggaggaacggaggcgggggttcgggtcccgacctccgacagccat
ctgctggcgtccatcctcaacgaactggagggaatctctgctcctaaatgtgacctttca
tcaaactttgagcccaaatataaaccgagttttagggatcagtgtgacggacgccaggct
gagaccagacttcctagtttgggttttcctgaggaggggcgatggtgtaacgacagcagg
gaccaaaatcagggttttgacttgcagacatgtcgcaccgctttccccccgccacctcct
ctgcagcggctgaaggaggatcgggaagtccctgcattcctgaaacagccccttcccgtt
cagtcgttcaaacggaacacgccgccgccgttaaaacacaaagatgctgggagtccacac
atgtcccccatctcacctgacaccgacacgactggtgtaaattctcctgctgacacaaat
acaaacatctcccacgttggctcctcttttgctgctaaagacgaccagaccatccctccg
atctcaacgctgaaaaaacatttcacgagcgctttggctttgaggagagactccgcttct
actagcagcgccgcagccgttgacgttcattcatcctgtaatttagaaaccattgagccc
agttcagctgcttcttctaccgctggcatccattccactagtcacaaatctcccgttgac
attcattcctcttcttctgggtcaaacgccgactgcttaccacattttgacttcaattct
tttcccgcttcacagctacattccagccgtgttaacacaaaggaaataccttcatctggt
cacaaggcatcatcatcctctgagttgcatcctatgaattctttatctcccgttggtttc
cattcagccaaaactggctggtccaaagagaggccagctcacactgactctacctccgga
ggtcacaggaataagactatcagctcaaatttctgtcgggtagcgcctgttgaccttaat
ccttccagcagcgtctctgctgatgacacgccggcaggaagtgatgttttctcaggagcc
aactctgacacatcatctcctgtttgtgtttcacccgttgactacaggactcagaatccc
tcctcgcccgttgactcccactcctcccgtaatgctgccaacagagagaaactgtcagaa
aggctttcaccctcaacagtgccaccaatgactcccagaggcaggtcgtcaccgaaatct
gctgttgacctttacccagaaggactgaaggtgtcatcagtagtcaatcacgaggagcga
tcacctcgtggtcacctgccacccactgatctacatagcagaagtcctttgccgcctgtt
agctttcattcttctagccttgtccgcactgcgattgacggacgcttgaaccacacagcc
ttatcctcgtctcccactgaaaaaacctcgctaacgtcacagggaaagtgcagttctgag
tctgaacccatcgttgaatcccactcaaaacttgtgcactccactgactccgattccaaa
cctcacaaccacttcgatcccagttcctacccacagttccccgttgactcccgctcaaaa
caccgtctccccatcggctctcagcatgaacctcagccatccgttgactctcattcaaaa
aactttcaactccacacggacaatcacgtcacatcttcccccgagtccgtggagaaccag
tggagctcctccgtcgacacccagtcgcccattgacgaacactcgaccaacagtgtctgg
aacacacatacacactccgccacgtaa
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