Scomber scombrus (Atlantic mackerel): 134006088
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Entry
134006088 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: serrate RNA effector molecule homolog
KO
K27103
serrate RNA effector molecule
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
134006088
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
Other processing factors
134006088
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ARS2
SERRATE_Ars2_N
RRM_1
Motif
Other DBs
NCBI-GeneID:
134006088
NCBI-ProteinID:
XP_062301136
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Position
23:540109..555262
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AA seq
921 aa
AA seq
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MGDSDDEFDRRRRDKFRRERSDMERSREREERRRDDWPDRDWERGRERRRDYDRGRRERF
SPPRHISPQHKRMRRDWDDHRGEPYRYDLPYGGGGGGGGGGGGPFPGAGPQGWHPDLPHM
HPHHGGHPLQGRLGMVDPDLPPPGPPTMRSFKEFLLNMEDSVDETESVKRYNQYKLDFRR
QQLQDFFLQHKDQEWFRSKYHPDDITARKTESLSALKTRLSVFLFLLDNSWLDNMSLDME
HAPAIIKLLDAAVIKMEGGTDLDLQVLEVPSASAAASGGETSGAAAGGAGPGGAAGGGAG
PGGAAAGGEKSQSEPSGGNVNTQSVAETSSSRMDETSSGETEETKETEKASEEETKQNGE
NEKDEGEEDEEEEEGEEEEEKKDEEEEEKKTTKKGRKRKRSVSADSGEGSASDSDSSHSE
GEEKEEEEEKEEEEEDGEEERRKERGKERVKERGKEREKEREKEVPVKPRPLHLTTSLFI
RSIPPEVSKEEITALCRRYPGFLRVALSDPQPERRFFRRCWVTFDRSVNIKETCWNLQNI
RLRDCELSPVVNRDLCRRVRNVNGLTHHKPVVRNDIRLSARLVHSLDQKGELWAGQMETN
PVLKNITDYLIEEVSAEEEELTGASGGNSDEAGGDAKDPSSSSSSEVTVETDEKLLKVLD
RLLLYLRLVHSVDYYNFCEYPAEDEMPHRCGLIHVRGPLPVAKITAAEVSEHQRMCEERL
APLLSPSETLSEEEASRLGKKEPEQEVEKFLSANAQELSKDKWLCPLSGKKFKAPEFVRK
HILNKHGDKVTAVRQEVEFFNHFLLDAKRPALPENKPLPPPAQGPPMGIPSFPGQSQQQQ
SLLGYPPGVRPPMPNFPGGGPHYPPNQFGAGRGNYDNFRGHLGGGGGGFPGKQRNNRGVR
GDPRSIIEYRDLDAPDDLDFF
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagcgatgacgagttcgacaggaggaggcgggacaagttcaggagagagagg
agcgacatggagcggtcgagagagcgagaggagaggaggagggacgactggcccgacagg
gactgggagcgcggcagagagaggaggagggattacgaccgcggccgcagagagaggttt
tctcctcctcgacacattagcccgcagcacaaacgcatgagacgagactgggacgaccac
cggggggagccgtaccgctacgaccttccctacggaggagggggaggaggtggaggagga
ggaggggggccgttcccaggagcggggcctcaaggatggcaccctgacctgcctcatatg
caccctcatcatggtgggcacccgctgcagggaaggttggggatggtggatccagatctg
cctcctcctggtcctccaaccatgaggagctttaaggagttcctgttgaacatggaggac
agcgttgatgagactgagtcggtgaaacgttacaatcagtacaaactggacttcaggcgg
cagcagcttcaggacttcttcctgcagcacaaagaccaggagtggttccgctctaaatat
catcctgatgacatcacggcgaggaagacggagtcgctgtccgccctgaagacccgcctc
agcgtcttcctcttcctgctggacaacagctggctggacaacatgtctctggacatggag
cacgctcccgccatcatcaagctgctggacgcagctgtgataaagatggagggaggcaca
gacctggacctgcaggtgctggaggtgccgagcgcttctgctgctgcgagcggcggggag
acgagcggagcagcagcaggaggcgcaggaccaggaggagcagcaggaggaggcgcagga
ccaggaggagcagcagcaggaggagagaagagtcagagcgagcccagcggaggaaacgtc
aacactcagagcgtcgctgagacgagcagcagcaggatggacgagacgagcagcggagag
acggaggagacgaaagagacggagaaggccagcgaggaagaaaccaaacagaacggagag
aatgagaaagacgagggggaggaggacgaggaggaggaggagggggaggaggaagaggag
aagaaagatgaagaggaggaggagaagaagacgacaaagaaaggcaggaagaggaaacgc
agcgtgtcagctgacagcggcgagggcagcgcctccgactctgactcctcccactctgag
ggagaggagaaggaggaagaggaggagaaggaggaagaggaggaggacggagaggaggag
cggcgtaaagagcgagggaaggagagagtgaaggaaagagggaaggagagagagaaggag
agagagaaggaggttccagtgaagccccgccccctccacctgaccacctcactgttcata
agaagcatcccacctgaggtttctaaagaggagatcactgctttgtgtcgcaggtatccg
ggcttcctgcgggtggcgctgtcagaccctcagcctgagaggaggttcttcagacgctgc
tgggtgacgtttgaccgcagtgtgaacatcaaagagacctgctggaacctgcagaacatc
aggctcagagactgtgaactgtctccggtggtgaacagagatctgtgtcgacgggtccgt
aacgtaaacggtctgacgcaccacaaaccggtggtgaggaacgacatccgcctgtctgct
cgactcgtacacagtctggaccagaagggggagctgtgggccggacagatggagactaac
ccggtcctgaagaacatcacagactacctgatcgaggaggtgagcgctgaggaggaggag
ctgaccggagcatcgggaggcaacagtgacgaggcagggggcgacgccaaagacccctcc
tcctcctcctcctctgaggttaccgtggagacggatgaaaagctgctgaaggtgttggac
aggctgctgctctacctgcgtctggttcactctgtagattattataacttctgtgagtat
cctgctgaggacgagatgcctcaccgctgtggactgatccacgtacgaggacccctacct
gtagccaagatcactgcagcagaagtgagtgaacatcagaggatgtgtgaggagcgtctg
gctcctctgctgtcgccctcggagacgctgagcgaagaagaagcttcaagactgggaaag
aaagagccggaacaggaagtggagaagttcctctcagcgaacgctcaggagctcagcaaa
gataagtggctctgtcctctgagtgggaagaagtttaaggctccggagtttgtgcgtaaa
cacatcctgaacaaacacggcgacaaagtgaccgccgtcagacaggaagtggagttcttc
aaccacttcctgttggacgccaagagacccgctctacctgagaacaagcccctccccccg
ccggcacagggtcctccgatggggattccctcctttcctggtcagtcacagcagcagcaa
agcctgctgggatatccacctggagtcagaccgcccatgcccaacttccccggcggcggt
cctcactaccctcccaaccagtttggggcggggcgcggtaactatgacaacttcagaggt
catttaggaggtggaggaggagggtttcccgggaaacaacgaaacaacaggggtgtgcga
ggtgacccgcggtcgatcatcgagtacagagacctcgacgctccggacgatctcgacttc
ttttaa
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