Scomber scombrus (Atlantic mackerel): 134006102
Help
Entry
134006102 CDS
T10651
Name
(RefSeq) nephronectin isoform X1
KO
K06824
nephronectin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134006102
04518 Integrin signaling
134006102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAM
cEGF
EGF_CA
FXa_inhibition
EGF_PEAR1L
EGF_DL_JAG
Extensin_1
JAG1-like_EGF2
C_tripleX
Motif
Other DBs
NCBI-GeneID:
134006102
NCBI-ProteinID:
XP_062301164
LinkDB
All DBs
Position
23:1213427..1222599
Genome browser
AA seq
706 aa
AA seq
DB search
MLLIRVSLALLSWFCSGSRGQDYDSWANQAVLSNGLCRYGNSVECCWGWRPMDWGRCQPY
CQQGCKHGECVGPDRCKCHPGYTGKACNQDLNECGLKPRPCKHRCMNTPGSYKCYCMDGY
MLQPDGSCRNARTCYHANCQYGCEVIKGAVRCTCPSPGLRLGPDRRTCVDIDECVSGGGV
CPRRRKCMNTFGSFLCKCHLGFKLTYINGRYSCIDKDSRPFCSLNPSSPKCRCKDGSCKA
IPKVPLEPPRPRTTRTTTPITTTTTTTTTAQPTTTVPTTTITIATTSLAAATTTSIPTTT
KPDTTTPVTTTTPITTIPVTTTPVTTTPVTTTPVTTTPVTTTPITTTPVTTTIPVTTTPD
TTTPVTTTPVTTTTPTTTTPVTTTPVTTTTPVTTTLITTTTPVITTPVSTTTPVSTTTLL
TTSETTPLIITTTTSTTTTPVTTPSSTVPSTAPPVPTTTVSTFAPVPTTTELDTTTTTTA
MTTTPTIATTVAPTTTTTTTTVSMATTTVNNKINKDVTQKQRGDVHIPRNPGQNQVWEFD
IELGNTADEAKDDPDVGVLHCSFDHGICDWMSDRDGDLQWETVHTSEGGRYLSVPELKAG
QRSIRGARLAVQIVPPWNHGDLCFSFSHWLTGHHVGVLQLFIQKKGRNQRYSPALWSRTG
GHGWRQTQVTLTTHALDKVLLKAERRKGRRGQIAVDDVRLRRGACR
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgatccgggtcagccttgctttgctgtcctggttctgttcggggagccggggc
caggactacgacagctgggcgaaccaggcggtgttatccaatggtctctgtcgctatggc
aacagcgtggagtgttgttggggctggagaccgatggactggggacgctgtcaaccttac
tgtcagcagggctgtaaacacggagagtgtgtcggaccggaccgatgcaaatgtcaccca
ggatacaccggcaaggcctgtaaccaagacctgaacgagtgtggtctgaagcctcggccc
tgtaagcatcgctgcatgaacacgccgggcagctacaagtgttactgtatggacggatac
atgctgcaaccggatggtagctgcaggaatgctcgaacatgttaccatgccaactgtcag
tacggctgtgaggtcatcaaaggggcggtccggtgcacctgtccgtcgccggggttacgg
ctgggacccgacagacgcacctgtgtggacatcgatgagtgtgtgtcgggcggcggcgtg
tgtcctcgtcgcaggaagtgcatgaacacgttcggcagcttcttgtgtaaatgtcacctc
ggcttcaaactcacgtacatcaacggacgctacagctgcatcgataaagactctcggccg
ttctgctctttgaatccgtcttctccgaagtgccgctgtaaagacggcagctgtaaagcg
atacccaaagtccctctggagccgccgagaccgagaactacaagaactacaactcccatc
accaccactacaactacgactactacggctcagccaaccactacggtccccacaacgacc
atcaccatagcaacaacttctctggctgctgcaaccaccacttcaatacctactactact
aaacctgatactactacacctgttactactactacacctattactactatacctgttact
actacacctgttactacaacacctgtaactactacacctgttactacaacacctgtaact
actacacctattactactacacctgttactactactatacctgttactactacacctgat
actactacacctgttactactacacctgttactactactacacctactactactacacct
gttactactacacctgttactactactacacctgttactactacacttattactactact
acacctgttattactacacctgttagtactactacacctgtatctacaactacacttctt
actacatcagaaaccactcctcttattattactactactactagtactacaacaacacct
gttactactccatccagtactgttccaagtactgcaccacctgtacctaccaccactgtg
agtacatttgctccggtgcctactacaaccgaactggatactactacaactactacggca
atgacgacaacaccaacgatcgctaccacggtcgccccgaccaccaccaccaccaccacc
accgtgtccatggcaacaaccacagtgaacaacaagatcaacaaggacgtaacgcagaaa
cagagaggagacgtgcacatccctcgtaacccgggtcagaaccaggtctgggagtttgac
atcgagttgggaaacacggcagacgaggccaaagacgatcctgatgtcggagtacttcac
tgttccttcgatcacggaatttgtgattggatgtctgacagagacggtgacctgcagtgg
gaaactgttcacacctctgaaggtggacgttacctgtccgtcccagagctgaaggcggga
caaaggagcatccgtggcgctcgattggccgtccaaatagtcccgccctggaaccacggc
gacctgtgtttctccttctctcattggttgacggggcatcacgtgggcgtgctgcagctg
tttatccaaaaaaaaggacgaaaccaaaggtatagccccgccctctggagcaggacaggt
ggacacggctggagacagacgcaggttaccttgacgacgcacgctctggacaaggtgttg
ttgaaggccgagcggcggaaaggacgacgaggacaaatcgccgtcgatgatgtcagactg
agacggggggcgtgtcgatga
DBGET
integrated database retrieval system
