Scomber scombrus (Atlantic mackerel): 134006288
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Entry
134006288 CDS
T10651
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134006288
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134006288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134006288
NCBI-ProteinID:
XP_062301358
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Position
23:complement(15442844..15584739)
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AA seq
683 aa
AA seq
DB search
MEITKARGASKCVEKMEKEVAPQKRQYCRTTVLNIISSLCSVASIAFCILLSINTTDIKN
RVVDLESGNGEHTFIRTPGYSVDDFNSMIQQRVNDLLSQRSYENLVKIRTARQASPECSC
PPGPPGKRGRRGRNGEPGPPGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVTGLPGDPGQPGESGPMGPEGPQG
LKGSLGPPGVPGMDGLKGDVGIPGLDGVPGAKGEMGEPGEKGDMGEEGLKGEIGEKGDAG
SSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
HGPQGKGERGEIGPLGPKGSQGESGTPGPKGSKGETGDNGDLGSVGPKGPPGQKGEQGST
EIIDYNGNIQEALQKITTITVTGPPGPPGPIGPHGIKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGEKGATGLPGLPGVNGGKGDKGDSGLPGPQGPSIIGTPGATGPHGPPGPMGPH
GFPGPKGEPGLHGVKGMRGETGHKGDRGPLGLPGTDGPSGPAGPAGPKGDRGERGAQGEP
GPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGFRGFKGEKGEPGQPGLDGLDAPC
QLGPDGLPMPGCWQKGVTPWLVA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagatcacgaaggcgagaggagcatctaagtgcgtggaaaaaatggagaaagaagtg
gcgccccagaagcgacaatattgtcgcactacagtgctgaacataatctcgtcattatgc
tcagtggcttccatcgccttttgcattctcctgagcatcaacacaactgatattaagaac
cgggttgtggatttggagagtgggaatggtgagcacaccttcatccgtacccctggctac
tccgtggatgattttaattcaatgattcaacaaagagtgaatgatctgctgtctcagcgc
tcctatgaaaatttggtcaagattcggactgcccgacaagcatcacctgaatgcagctgt
cctccaggacctccgggaaagcgaggaagaagaggccgcaatggagaacctggacctcct
ggtcctccaggtccgcagggtgaaaagggtgatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcagggacaagcaggaccacctgggcctccagggccacctggccctcct
ggcccgagggggcctccaggagacacaggaaaagatggacccaggggtgtaactggtcta
ccgggtgatccagggcagcctggagaatcaggacccatgggacctgaggggccacagggg
ctgaaaggttcacttgggcctcctggtgttccaggtatggacggactgaagggggatgtt
ggcatcccaggactggacggtgtccctggagccaagggggaaatgggagagccaggtgaa
aagggcgatatgggtgaagaaggcctgaaaggtgaaattggagagaagggagatgcaggc
tcttccgcagcaggcatcaagggtgaacctggagaacctggacgaagtggacacaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctt
ggtccccagggagagccaggccttccggggctcccaggaacaaagggagagagaggagac
catgggccccaaggaaagggtgaacgaggagaaattggaccccttggaccaaagggttca
cagggagagtctggcacaccgggtcctaaagggtcaaagggggagactggagataatgga
gacttgggatccgtcggcccaaagggtcctcctgggcagaaaggagagcaaggatccact
gaaatcatcgactacaacggcaacattcaggaggctttacagaagattaccactattaca
gtaacgggtcctcctggccctcctggcccaattggaccacatggtataaagggggatcgt
ggtatgcccggcctgcctggacttgatggagaaagaggctacaaaggctccaagggagat
atgggaatgcctggagcttcaggggagaaaggagccaccggtttacctggtttacctggt
gtcaatggaggaaagggtgataagggagattcaggtctacctggtcctcagggtccttca
atcattggcactccaggggcaacagggccccatggtccaccaggacctatgggaccccat
ggattccctggaccaaagggagaacctggtttgcatggtgtgaagggtatgcgtggagaa
acaggccacaaaggggaccgtggaccattaggtctccctggcacggacgggccttcgggt
ccagctggtccagctgggccgaaaggtgacagaggtgagagaggggcacaaggagagcca
ggaccaaggggaccttatggactacctggagctgctggaacaccaggcttggatggttta
ccaggcttaaggggagagaaaggcgacgttggggaaagaggagaaaagggtttccgggga
tttaagggtgaaaagggggaaccagggcagccaggtctggatgggctggatgccccatgc
caattgggcccagatggattaccaatgcctgggtgctggcagaagggagtcacgccatgg
ctggtagcctga
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