Scomber scombrus (Atlantic mackerel): 134006317
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Entry
134006317 CDS
T10651
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382
Cornified envelope formation
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134006317 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134006317 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134006317 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134006317 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
134006317 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
134006317 (col4a6)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134006317 (col4a6)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134006317 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134006317
NCBI-ProteinID:
XP_062301387
LinkDB
All DBs
Position
23:5774756..5887455
Genome browser
AA seq
1721 aa
AA seq
DB search
MAPPMGFTCFTAERRFPVVERESRGRQQAACSGTTPAGTKFDGPCGGLDCSGGCRCNPEK
GSRGRPGPLGEVGQSGPEGSRGPVGASGPKGEKGHLGIRGPSGPKGDKGPMGVPGFQGAD
GVPGHPGQDGGRGPTGLDGCNGTRGEPGLPGYGTGEPGPSGFPGPFGPKGQKGEPRFIST
DNEIRSLPGPRGLDGAPGIRGPDGQGGLNGPRGPEGFAGPPGPPGPPGLMGSRSDGYQGE
RGDKGDVGLPGDPGQPMINGVVEFVGFPKGDKGLQGEPGRKGGRGYPGNAGRPGPFGYRG
EYGEKGIPGYPGGRGAPGFNGPPGASGQQGYRGDPGYPGQQGYNGPKGDQGDTGPPGPPA
YINSLGTSVQGEPGNPGLGGLPGAPGDQGAPGFPGPPGRPGVGYGPGGGTPGFPGTPGPK
GEKGNSGPPSYGVEGIPGSPGLPGSPGPRGPAGPTGFRVLYGLAGSQVGTSYPGQPGSPG
SRGPQGNSGFKGFRGDPGDCACRGDSFSGGQGSPGAPGADGTPGFPGRKGELGDSGSPGF
GGVQGPPGRPGPSGTFGRKGEKGTSYYPNYGVGVKGEPGSTGPRGPTGETGKSGRDGLPG
FPGAPGPPGDAGYGTVGEKGFPGFPGQKGRPGGPGEPGQGFVGTPGFRGEPGESGLPGLP
GQPGLPGPRGENSCGGVNGTGEGTGTVLPCTIPGEDGAPGYPGRAGPPGPKGQSGFPGGS
GRPGFDGAKGERGDPGFGGQPGPQGFPGPRGDAGAPGIPGQSFDGGRGKDGAPGRPGAKG
LPGDVIGATPGSPGRDGFPGTPGDKGLPGTPGGSGSPGFDGRSGVPGLKGERGLDGYPGS
PGLPGPPGELTGGYPGRPGAPGAKGLSGPPGFPGRKGERGNPGFPARGGLKGAQGLPGIP
GSPGSMGPTGPPGPPTREGIPGSPGRKGERGFAGLMGFPGLPGRSGSPGFPGGKGASGGP
GRDGLPGSPGFTGLKGDRGYPGRPGVAAPILPVEYLEKGDLGIPGGSGLPGFPGPRGDKG
LPGLPGRQGLPGLPGFSEQSRGQPGVPGYPGQPGGPGFPGPKGEPGIMGFPGMSGPRGDD
GSPGFPGNPGEAGRPGGKGIPGDSYSYPGGPGAKGLTGDPGYSGGPGRDGAPGDNGFPGS
PGFPGSKGGPGEAGRPGIMGSPGFPGPKGLPGYPGRKGQDGSPGLSGGNGGPGSKGLSGP
PGLDGLNGLGGPKGLPGTPGGSGGGLPGSNGFPGAKGERGVSYAGGPGYPGAKGERGNQG
GPGLPGFPGRPGPPGETVGSDIPGPVGDPGYPGLDGENGFQGPPGPPGPPGPGTAQGDRG
DSGLPGFPGSPGRKGESGNPGGSGLPGSPGFKGEQGDSGFSGGPGLKGFPGESGYYGLKG
PKGSRGRQGGKGPPGVILTRPIAPFEQKYGDMGIPGDSGNPGFPGGPGQSGLPGRPGPKG
RPGPAGKLGRTGSVGLPGPLGDGGPPGFPGPSGEQGRPGSIGRPGPAGGVGRSFSIGYTL
VKHSQNAQVPMCPQGMAQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPN
EVCYYASRNDKSYWLSTTAPIPMMPVAEEQIQPYISRCSVCEAPSQAVAVHSQDMTIPTC
PAGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKF
SFWLTTVEPDQEFRYSPGQETLKEGQERFRVSRCQVCSKFL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggctccccctatgggattcacatgcttcacagctgagcggcggtttcctgtggtggag
agggagtcgaggggccgacagcaggcggcttgttcaggcacgactcctgcgggtaccaag
tttgacgggccatgtggaggcctggactgcagcggaggatgcaggtgcaacccagagaaa
ggcagcaggggtcgtcctgggcctctcggtgaagttggtcagagcgggccagaggggtcc
cgcggccctgtgggggcttcagggcccaaaggagagaagggccaccttggaataagagga
ccatctgggcctaaaggagacaaaggacctatgggagtgcctgggttccaaggagctgat
ggagtacctggtcaccccggtcaggacggtggcagaggaccaaccggactggacggttgt
aacgggaccagaggagaaccgggactgcctggctatgggacaggagaacctggacccagt
ggtttccctgggccttttgggccaaaaggtcagaaaggagagcctcgattcatctcaaca
gataacgagatccggagtttaccgggtcctcgaggactggacggcgcacctggtatcaga
ggtcctgatggtcaaggtggtctgaatggtccaagagggcctgaaggatttgctggccca
cccggtcctcccggtcccccagggctgatggggagccgtagtgacggatatcaaggagag
agaggagacaagggcgacgtgggcttgcctggtgaccctggccagccaatgatcaatggc
gttgtggagtttgtgggttttcccaaaggagacaaaggattgcagggtgaacctggacga
aagggaggccgtggctaccctggcaacgctggccgacctgggcctttcggctaccgtggt
gaatatggagagaagggcattcctggataccctggaggaagaggcgctccgggttttaac
ggacctcctggtgcatccggacaacagggatatagaggtgatccaggttaccccgggcaa
caaggatacaacggacccaagggagaccagggagacaccggaccaccaggacctcctgct
tacattaatagtttgggtacatctgttcaaggtgagcccggtaacccgggtctaggtgga
ctgcctggtgctcccggtgaccaaggagctccagggttcccagggccaccaggccgacca
ggagttggttatggcccaggtggtggcaccccaggttttccagggaccccaggcccaaaa
ggagagaaaggtaattcagggccacctagctatggcgttgaaggaatcccaggctcccct
ggacttcccggatcccccggccctcgtggacctgcaggcccaacaggatttcgtgtactg
tatggtttagcaggttcccaagttggtactagttaccccggacagcctgggtcacctggt
tccagaggaccgcagggtaactcaggattcaaaggcttcagaggggatccgggcgactgt
gcttgtcgtggagatagcttttcagggggacaaggatcacctggtgccccaggggcggac
ggcacccctggcttccctggacgaaaaggtgaactcggtgactctggttcccctggcttt
ggcggtgttcagggacctcctggtcgtcctggtcctagtggcaccttcggtcgtaaagga
gaaaagggaacgtcttactatcctaactatggtgtgggagtgaaaggagagcctggatct
actggacccagaggacctacaggtgaaactggaaaatctggcagagatggactgcctggc
ttccccggagcccctggacccccaggtgacgctggctacggtacagtcggggagaaaggt
ttcccagggttccccggacaaaaaggtcgtcctggtggccctggagaacctggccaaggc
ttcgtcggaacgcccggcttccgcggagagccgggagagtctggattaccagggttgcca
gggcaaccaggtttacctggaccaagaggtgaaaacagctgtggaggggttaatggcacc
ggagagggaacgggcacagtgttaccttgcaccatacctggtgaggatggagcacctggt
taccccggtcgagctggaccaccaggtcctaaaggtcagtcaggtttcccaggaggttct
gggcgtccagggtttgatggtgccaaaggagaaagaggagaccctggctttggaggtcag
cctggaccacaaggtttccctggaccaagaggagatgctggagctccaggtattccagga
cagagttttgatggaggcaggggaaaggatggtgctccgggacgtcccggagccaaaggc
ctacctggagacgtaattggagccacacctggaagtccaggacgggacggttttccggga
acccccggagacaagggtctgcctgggacaccaggaggctctggatcacctggttttgac
gggcgttccggtgttcctggactgaaaggagaacgtggactggacggttatcctggtagt
cccggccttcctggacctccaggtgagctcaccggtggatatcccggtcgacccggagct
cctggcgccaagggactgagcggaccaccaggttttcctggtagaaagggagaaagagga
aaccccggtttcccagcgcgtggtggtttgaagggagcccaaggactgcctggcatccct
gggtcaccagggtcaatgggaccaactggacctccaggcccaccaaccagagaaggaatc
ccaggaagcccaggaaggaagggtgagagaggtttcgctggactgatgggtttccctgga
ctaccgggtcgttctggttctccagggtttcctggagggaagggagcttctggagggccc
ggaagagatggacttcctggcagtcctggattcactggactgaaaggtgaccgcggatac
cctggccgcccaggcgtggccgctccaattcttcctgtagagtatttggagaaaggagac
ctcggcatccccggaggcagcggccttcctggtttccctggacccagaggtgacaaaggt
ctgccaggcctgcctggtcgtcagggtctgcctggacttcctggtttctctgagcagagt
agaggacagccgggagtgcctggataccctggacaaccaggaggcccgggcttccccgga
ccgaagggagaacctggaatcatgggattccctggcatgtctggaccgaggggtgatgat
ggctcacctggtttccctggcaaccctggagaagctggtcgtcctggtggcaaaggtatt
cctggagactcttactcatatcctggaggtccaggagctaaaggtctgacaggagatcca
ggctactcaggtggtcctggcagagatggcgcccctggcgacaacggctttccaggaagt
ccaggtttccctggatcaaagggaggtcctggtgaagcaggacggcctggaataatgggc
tcccctggtttccccgggccaaagggtctgcctggctatcctggaagaaaaggacaagat
gggtctcctggcctttctggaggtaatggtggacctggatccaaaggtttgtcgggaccc
cctggtttggacggacttaatggccttggtggacctaaaggactccctgggaccccaggt
gggagtggaggaggtctcccaggttccaacggttttccaggggcgaagggagaaagaggg
gtttcctatgctggaggtcctggatatcctggagcgaagggagagagaggaaaccaaggt
ggtcctggactcccagggttccctggtcggcccggacctcctggtgagactgtgggctca
gacattcctggacctgtaggagacccaggctaccccggactggatggagaaaatggtttc
cagggtcctccaggtcctccagggccacctggtccaggcacagcccagggagacagaggt
gactctgggctcccgggattccccggatcccccggcaggaaaggagaatcaggaaacccc
ggaggctccggactgcctggcagccctggtttcaaaggagaacaaggtgatagtggtttc
agcggaggccctggtctcaaaggtttccctggtgaatctggctactatggactcaaagga
ccaaagggatcaagaggtcgtcaaggtggtaaaggtccccccggcgtcatactgaccagg
ccaattgcaccctttgagcaaaaatacggagacatgggaattcctggtgatagcggaaac
cctggtttccccggagggcccggccagtctggattgcccgggcgtccaggtcctaagggt
cgtcctggccctgcgggtaagctgggcaggaccggctctgttggtctgcccggaccactc
ggtgacggcggaccccctggattccctggacccagcggagaacaaggtcgccccggttca
atcggtcgccccggtcctgccggcggtgtcggccgcagcttcagtatcggctacactctg
gtgaagcacagccagaacgcgcaggttcccatgtgtcctcagggcatggctcagctgtgg
gagggctacagcctgctgtacgtggagggacaggagaaggcacacaaccaggaccttggt
cagcccgggtcctgcctccccagattcagcaccatccccttcctctactgctcccccaac
gaggtctgctactacgccagccgcaacgacaaatcctattggctttccacaactgctccc
attcccatgatgcctgtggccgaggagcagatacagccttacatcagcaggtgttcagtg
tgtgaggctccatctcaggctgtagcagtccacagtcaggacatgaccatccccacctgc
ccggccggctggagaagtctctggataggatactccttcctcatgcacacagcggctggc
gctgaaggtggcggccagtccctggtgtctcctggctcctgcctggaagatttccgcgcg
acaccgttcatcgagtgcaacggcgccaaaggaacctgccactactttgccaataagttc
agcttctggctaaccaccgtggagcccgaccaggagttccgctattctccggggcaggag
accctgaaggaaggccaggagcgcttcagagtcagccgctgccaagtctgcagcaagttc
ttgtag
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