Scomber scombrus (Atlantic mackerel): 134006354
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Entry
134006354 CDS
T10651
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04512
ECM-receptor interaction
Brite
Lectins [BR:
ssco04091
]
C-Type lectins
Lecticans
134006354 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134006354
NCBI-ProteinID:
XP_062301430
LinkDB
All DBs
Position
23:complement(21576781..21597885)
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AA seq
2187 aa
AA seq
DB search
MGSPGQTLVWMLLPSLLSGVTSSSHGSLVKVNKGLKVKRGQSAYLQDGDLQFHIPRQKDA
CKVEVVLNEPITQRVGKLMPQVFDCHYLADEIKYVHNGCPLLKEDNVLLRLYRFTETETY
MEVFALHVDVMEPDCSIIKLGPKSLEVPEFYGFSDAVDGNVVSFRYEKKSSLECSIHLSS
HDTHLPAHGQLVTGEPEKATTRGDEPESFIHLRQQLDNKARAMCKSSDCLKGLKLVKFTK
ISCDDFLMMGLKYQHIDPPSPDIDYIAIRLDLKDTRSGSIYQTEQAWIPVRVIGALPNQP
PKPSFMSMFILEVDQFILTPLSTATLDAEDEETPKQHLVFNITKPPADGFITHLTDHTRP
ISSFTWLDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFVFEKSPPITVHMSVRNADTNAP
RVSWNMGLSLLEGQSRPITWEQLQIVDNDNLNAVRIITVDGLQHGRLTVRGGKGFMCTVS
DIKAGVVRYHHDDSDSTKDFIIFRITDGPHQTRHKFPIKVLPKDDSPPFLITNMLLEVSE
GQMALLRGSTLQASDMDSSDDYILFNITRPPQAGEVMKMPGAGLTGYPVSHFLQKDLSQS
MVYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVVMVHIEPVPDQPPKEVPGASRCLVIK
ETDVVHITRQQLHFVDQESPDSELTFTVTTPPFYTGPHSSPDAGRLFLVDSIPKFTKDSN
APVLRLFTQHAVNFMKVAYMPPIMDIGPYPQYIQFVLSVTNNLGKTITGICFNITVVPVD
NQPPQVITNPLTVDEGGECWLSPEHLLLSDVDSMEESLKVELQREPHHGALQLGGFPLKP
GQAFTVHDLKSLKVRYNHDNSETLEDKIEFTATDGTNSVSFVLNVKVNPINDEVPVLVVG
LKPVLSCLEGEEIVITAEYIYATDADSDNSSLAFLIARQPYHGVVHRNGVIIDRFIQADI
TAGIISYKHTGLEIGLTPRHDTITFVISDGETESSALCCGGGNPVRTRGTTRLRDSLPLY
DLQITVFPVDSQPPSLTTGDIFVVDEGGTAPITVSHLKASDMDTVLEKLVVSLISPPQFG
YIENVLPSPGFEKSNMGISIASFSYKDIIDSHVNYVQSRHQRMEPTTDQFMLCISDGKHS
SAHVPFYVIISPTNDEIPEFIARNITVKEGEMKQLDSSVLHAMDLDVPKNILVFSVVKPP
QHGSIIHHSSGQPQAQVYKHQEASLQSTVVDFTMTDLINGNTVMYMHDDSENMDDSFTIQ
LTDGRHQLNKQVMVKVQSVNDEKPHVIRNNGLEVEPGETRVISSVTLFAQDNDSPSAKVM
YIFESVPTQGLLQLKVGQDWVTLTAGTNCTQEMVDMNLLRYMHTDLHSAKTQEFFVFYLL
DGKNQSPPQHFHISVKDLEKGNIAIFVKPVNVNRGDRVVLTTDVLLATDSTDKSEELLYV
ITNPPAHGHIEYIKHPGLTISTFSQMDIAANIVAYVHDNRASTPTETFQFVVSNGKTSRN
GTFEIAVEMVDRILPSLTSNKGLTVPQGSSMMLGPDCLAMSDPDTPPNALTFVLLQPPQY
GRLVLGGTTLTVGSNFTQRDIQELEVTYKHDGGPSQIDRFGFTACDSTNRGFLLEGRLHT
EPVFFTIQIKPLDRSSPDVVKLLPLWKAELLDNGRYGIFLSSRELRAQDSHSKEEELIFC
IIRQPYFSYLENITTGGFVPQCFSQMELNKRIIVYIINPDRESLSDSLEFRVSDPLGNAG
PSHILELSWSSVELSQPQYSVCEERRAFSMDIIRRGNLAESSYITVKVKELTATAGKDFL
ISPSSLIQFDPGVSKRSWQTEIILDHLEEAEELFEVLLVSPEGTMIGSINKAQITIRDTG
RGQCRLNQDQEAPVLGGKEIRSEAYPQHGSIKLEKLPLGTEAVIWSRGDSVSRPGVGVQK
KKLRAIGNPKSIAPSSVFHNGTDIVYTYHGITEMKVEDDTTPSRKGRKANVRVVSRGAQQ
QASAALTKSKPGPQRKVPNPAKSGPVKGHVAADNAIPKPCVPELMGLLHFNQTTNQLFHC
NGVSWKPWAPTDQMVSAQACPKGWAFHSGHCYILSTERKATWNTASRACKERYKGSLASV
LSKVDMDWLWDFSGRKPFWIGLNDREGRGSWEWAGGEPISYTNWRKTPPRSKMKGAKKCV
LVWKRAKWQIRDCKAGRGHRYMCSVKT
NT seq
6564 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaccgggtcaaacactggtttggatgttgcttccgtcgctcctgtcgggagtg
acctcctcatcacacggttcccttgtgaaagtcaataagggtttaaaggtgaaacggggt
caatcggcctacctccaggatggtgaccttcagtttcatattccccgtcaaaaggatgca
tgcaaggtggaggtggtgttaaacgagcccattactcaacgagtgggaaaactcatgcct
caggtatttgactgccactatctggctgatgagatcaaatatgtccataacggctgtcca
ttgttaaaggaggacaatgtcctgcttcgactttacaggtttactgagacagagacatac
atggaggtgtttgctctccacgtggacgttatggaacctgattgtagtatcataaagctg
gggcccaaatccctggaggttcctgaattctacggcttctccgatgctgtggatggcaac
gtggtgtccttccgctatgagaagaagtctagcctggaatgtagcatccatttgagtagt
catgacacccacctgccggctcatggccaactggtcactggagagccagagaaagccacc
acgagaggggacgagccagagagcttcatccacttacgtcaacaactcgacaataaagcc
agggcgatgtgtaaatcttcggactgcctgaagggtttgaagcttgtgaagttcaccaaa
atttcttgtgatgacttcctgatgatggggctgaaatatcagcacattgaccctccatct
ccagacatagactacattgcaatcagactggacctcaaggataccaggagcggcagcata
tatcagactgaacaagcctggattccagtgcgggtcattggtgcactgcccaaccagcct
cccaaaccatccttcatgtccatgtttatcctggaggttgaccaattcatcctcactcca
ctctccactgctacactagatgctgaagatgaggaaactcccaaacagcatttggttttt
aacatcaccaaacctcccgctgacggctttatcacacatctgaccgatcacactcgccca
atctcctccttcacatggctggatctcaatgacatgctcattgggtatcaacctccaaac
tcctcacatacccaacgcaggaattacgaggtggaatttgaggttcatgattttgtcttt
gagaagagcccaccaataactgttcacatgtctgtaaggaatgcagacaccaatgctccc
agagtgtcctggaacatgggtctcagcctgttagaaggtcagtcccgtccaataacatgg
gagcagctccagattgtggacaacgacaacctgaatgccgtccgtatcataactgtggac
gggctgcagcatggacggctgactgtcagaggtgggaagggcttcatgtgcactgtcagt
gacatcaaagccggcgtggttcgctatcaccatgacgacagtgactctaccaaagatttc
atcatctttcgcatcaccgacggcccccatcagactcgtcacaagttccctatcaaggtc
ctcccaaaggatgacagccctcctttcctcatcaccaacatgttgctggaggtgtcagag
ggccagatggctctgcttagaggttccaccctccaagcttcagacatggactccagcgat
gactacatcctatttaacatcacccgccccccgcaggcaggagaggtgatgaagatgcca
ggagcaggacttacaggttaccctgttagccactttctgcagaaggacctatcccagtcc
atggtttactatcgacacctcggaaatgaagtgtttgatgattccttcgaggtggtgctg
tctgatttccatgacccccccaacctgtcagagcctcaagtggtgatggtacacatagaa
cctgtaccagaccaacctcctaaagaggttcctggtgccagccggtgtcttgtgatcaaa
gaaacagatgtggttcatataacacggcagcagcttcactttgtggaccaggagtcacca
gacagcgagcttacattcacagttaccactccacctttctacactggacctcacagcagt
cctgatgcagggaggttgttcctggtggacagtatacccaaattcaccaaagactccaat
gcaccagtgttgaggctcttcacacagcatgcagtgaacttcatgaaagtagcttacatg
cccccaatcatggatatcggtccttacccccagtatatccagtttgttctgtctgtaacc
aacaaccttggcaaaacaatcacagggatctgctttaacatcactgtggtgccagtggac
aaccagcccccacaggtcatcacaaacccacttacagtagatgaaggaggggagtgctgg
ctgagccctgaacacttgctgctgtcagatgtggactccatggaagaatccctaaaggtg
gagcttcagagggaaccccatcatggtgctctgcagcttggcggcttcccactaaaacca
ggccaggctttcactgtgcatgacttgaaaagccttaaagttagatacaatcatgacaat
tccgaaactttggaggacaagattgaattcacagcaacagatggcactaattcagtcagt
tttgttcttaatgtgaaggtgaaccccatcaatgatgaggtcccagttctagtcgttggt
ttgaaaccggtcctcagctgtttggagggagaggaaatagtcatcacagctgagtatatc
tatgctactgatgcagacagtgacaacagcagcctcgccttcctgattgccaggcaaccg
tatcatggtgtggtgcaccgaaatggtgttatcatcgatcgcttcatccaggcagacatc
actgcagggattatcagctacaaacacacaggactggagattggactcactcctcgacat
gacaccattactttcgtcatttccgacggagaaacagaaagctctgctctatgctgtggt
ggaggaaatcctgtcaggaccagaggcacgactcggctacgtgacagtcttcctttgtat
gacctccagatcacagtgtttccagtagacagccagccaccctcacttacaacaggagac
atctttgtggtggatgaaggtgggactgcaccaataacagtgtctcacttaaaggcctct
gacatggacaccgtcctggagaagctggtggtcagtctgatttctcctccccagtttggc
tacattgaaaacgtcctgcccagtcctggctttgagaaaagcaacatgggcataagcata
gcctccttttcatacaaagacatcattgacagtcatgtcaattacgtacagtccagacac
cagaggatggagccaacgactgaccagttcatgctctgcatatcagatggcaaacacagc
tcggcccatgtgcccttctacgttataatcagcccaacaaatgatgagatcccagagttc
attgctcgaaatatcacagtaaaagaaggagaaatgaagcagctagactcttcagtcttg
catgcaatggatctggatgtccccaagaatatcctggtcttcagtgtggttaaaccccct
cagcatggcagtatcatccaccacagcagtggtcagccacaagctcaagtctacaagcac
caggaggccagccttcaatccacggtggtcgattttacaatgacagatcttataaatggt
aacactgtgatgtatatgcatgatgactccgagaatatggacgacagttttaccatccag
ttaactgatggcagacaccaactcaacaaacaagtgatggttaaagtccaatcagttaat
gatgagaagcctcatgtcataaggaataatggactggaggtggagccaggagagaccagg
gttatatccagtgttacactctttgcacaggacaatgattctccctctgcaaaggtcatg
tacatatttgagagtgttcctacccaagggctactgcaactgaaggttggtcaggactgg
gtgacgttgacagctgggactaactgcacccaggaaatggtggatatgaaccttctgcgc
tacatgcacacagacctgcacagtgctaaaacacaggaattctttgtcttctacttgctg
gatggaaagaatcaatcacccccacagcacttccacatctccgtcaaagatctagaaaaa
ggaaatatcgccatctttgtgaaaccagtgaatgtcaaccgtggcgatcgtgtggttctc
accacagatgtgctgttagccacagacagcacggacaaatctgaggagcttctgtatgtt
atcaccaacccgcctgctcatggacacattgagtacatcaaacatcctggactgaccatc
tctaccttcagccagatggacatagcagccaacattgtggcttatgtgcacgacaaccga
gccagcacacccacagaaacctttcagtttgttgttagtaacggtaagactagccgaaat
ggaacctttgagattgcagtggaaatggtggatcgcattttgccatctttgacctccaac
aaaggccttacagttccacaaggatcctctatgatgctaggtcctgactgcctggccatg
tctgaccctgacactccccccaacgccctgacctttgtccttctgcagccgccacagtat
ggcaggctagttttaggtggaaccacactgactgttggctcaaacttcacccagagagat
atacaggagctagaggtaacatataaacatgatggggggccgtcacagattgaccggttt
ggcttcactgcctgtgacagcaccaaccggggcttcctgcttgaagggcggttacataca
gaacctgtgttcttcactattcagatcaaacctttggataggtcgtctcctgatgttgtg
aagctgctccctctttggaaggcagagcttttagacaatggacgatatgggatctttttg
tcatctcgggagctgagggcccaagacagccatagcaaagaagaagagctgatattctgc
atcattcgccagccctacttcagttacctagaaaatatcactacaggtggatttgtacca
cagtgtttctctcagatggagctgaataagagaattattgtctatatcatcaatccagac
agggagtctctgtcagatagcctggagttcagagtgtctgatcctctagggaatgctggg
ccctctcatatacttgaactgagctggtccagtgtagagctgtctcagcctcagtactcc
gtgtgtgaggagcggagagctttctcaatggacatcattcggaggggaaacttggcagag
tcttcatatatcactgtcaaggtaaaggagctgactgcaactgcaggaaaagattttctc
ataagcccttcttcccttatccagtttgatccaggagtatcaaagagaagctggcaaact
gagataattctggatcacctcgaggaggctgaggaactgtttgaagtgctgctagtctct
ccagaaggcacaatgattggcagcatcaacaaagctcaaatcaccatcagagacacagga
agaggacaatgcaggctaaaccaggatcaggaggctccagttctcggaggaaaggagatt
cggtccgaggcgtacccccagcatggatccattaaactagagaaactgcctcttggcaca
gaagcagtcatttggagtcgtggagacagtgtttccaggcctggagtaggcgtccaaaaa
aagaaactcagagctataggcaatccaaagtctattgcaccttcatctgtttttcacaat
gggacagacatagtttacacgtatcatggcatcacggaaatgaaagtagaagacgacacc
accccatcgaggaagggaagaaaggcaaacgtccgtgtggttagcaggggcgcacagcaa
caagcatcagcagcgctaactaagtcaaagcctggccctcaaagaaaggtcccaaaccct
gcaaaaagtggacctgtcaaaggacatgttgcagctgataacgccatccccaagccatgt
gtaccagagctgatgggtctcttacatttcaaccagaccaccaatcagctctttcactgc
aacggtgtatcctggaaaccctgggcaccaactgaccagatggtgagcgctcaggcatgt
cctaaaggctgggcctttcacagtggccactgttacatcctcagcactgagcgcaaagcc
acttggaacacagctagcagggcatgcaaggagagatataaaggcagtttagcaagcgtc
ctctctaaagttgacatggactggctgtgggacttcagcggaaggaaaccattttggata
ggcctgaatgatagagagggcagaggaagctgggagtgggcgggcggcgagccaatcagc
tacaccaactggaggaagaccccccctcggtccaagatgaaaggggccaaaaagtgcgtc
ctggtgtggaagagggcgaagtggcagatcagggactgcaaggctggcagaggtcatcgt
tacatgtgttctgtcaagacttga
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