Scomber scombrus (Atlantic mackerel): 134006569
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Entry
134006569 CDS
T10651
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ssco03037
]
134006569 (rp1l1a)
04812 Cytoskeleton proteins [BR:
ssco04812
]
134006569 (rp1l1a)
Cilium and associated proteins [BR:
ssco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
134006569 (rp1l1a)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
134006569 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
134006569
NCBI-ProteinID:
XP_062301469
LinkDB
All DBs
Position
24:11894352..11904713
Genome browser
AA seq
2620 aa
AA seq
DB search
MHSVQTGMWDPRSLSKHVSPLPPPPLTNSRLTRVTKATPAKRITFYKSGDSQFGGVRMAI
HKRSFKCFDTLLDDLSQKVPLPFGVRTVTTPRGLHAIKHLEQLQDGGCYLCSDRRHAKPI
NMEMASKRPNMWTNHSRRPQRPEVSPTTPPGHLPYRQRRILLVKNSEPGMRRSVVLSRRS
TRSLRAFLDEVSEVMQFHVRKLYTPEGRRIDSIQTLMTSPPVLVCVGREAFSPLLVNYIR
KSSEEKLPGLGTRSPGLGPRTPGNGAKSPATQGPRSPPHGAQSRASEYSEGHESKKSVNF
GLETKKSIIHPRSDSSNRSARFSLSSEKSYGNGVSTLSQGRPAIMNDDIEKRVLVNKDGS
LSVEMRVRFRLQNEETLQWSTQIKRSPSLTNDCCPMSQAQPHYLQQGQSESCSDPDSTTF
EPEVVEYSSQPLQHVLEGSGCPCCYQRQEQQYDLWENPAHSHKQRPAAPPHKSSHTHTMM
RHTHSSSSSSSCNSRRVVRCRAQLSNCGGGSGSEQSQLVQEEMCVTEQVERRVAVEQHGD
THVEVCRVSRCCSRSEVLAIDKNLRPVSRKSVEDELMLEEGDRPLSGISSSSHVLQSLKE
DQYDEDDDLPPSASQCGNSNESTPSPISQTGNDRPTGNILAGSVHSTKHKEHKDTEERGS
RTVSAACSCHCGSATPNSTTEADEVDRAPSSKSRTSRASCRSTTARTPNSEEGAADDEDD
EVKKVVSGLSGHTGLSAGSQQSGAPSVSHNCGGCKHGVNSSSSSRASQSSHHTNQASPKP
GSPPHDQENANNGSEEDGSDVSAVSTQSNKSNLTNHGRCSPISNVVEGRASRAMSRTSNL
EPAEKEEERAPSATSATSHRSSRSHKSCCNGATDATTKKEEERSPSAMSAQSNLSAKSSK
SQKSNKNGTVETLDIKTRDEAEGQNAEERAGSSLSAKSCISAKSSASVKSHKSNCPSRIR
VASPADNAALEEDETNNRACNSLSVKSTKEERPDSVLSAKSAKSAKSTKSTKSNVSGKSS
KSHKSTCSHYVSEISPGAKVADDPIEDATGQEGETELEDRAASPLSAKSNKSRKSTKASQ
RSTSPRSEAGGDEEERAASQMSARSVKSNTTVKSNCNGNEKVAEEAEEEENENVEEEEEE
EEETQPRPESVASAKSENEERPASAVSCKSKKSLCNSNADENRSPSAMSGKSNTSAKSAK
SQGSKHTPASPNTDEAVVPSTETNEEEKQDENQERVASAMSVKSKSSVRSSTSHKSNSNQ
HVKSVLPSSNVVTIKTPEWVDEEGNETTERPTSAISAKSGKSIAVIETADADGKQEEDNA
PKIKSSEHSNGQTLSPKGTRSRGPSALSVHSTTSAKSGKSKCHCGKAKKEKETEVKEVEK
KEEDEKLKSEDDKEPSDRAASVLSSSSKKERESDDPEPPLSRNSSGSVSLGLPEDQETGD
SDSGKSNVSFHVNTGSKGRVKTATPDVRKSTGESTKEDMEKTESAMSQKSNINGSGSTLS
HNLPAVDIPTIETPGGGNNEGEDGEEQKTERPASELSAKSSRSQKSSRSCKVKAAARLGD
SKPKEQHSSASPTKAGNDHETGSVKSVLTKKANNLDAVDSRTPSAMSSASAKIRSKSPAS
ASAKNASVAKTPAGDLTNNDAENKASSRPASKTKGKDVTDDAASVCSKSPCCLRPGSAAS
ANSVSKMKASKQSKQDDPVISEDLNPVKGDSGSVKSVKPSKPCPSHSSKPSSKVETCSES
TLCHSLSAADLLKETMATTRPYSRQSKASDKPSSEKSGTCQRNKSQKDRKELERTPAFLP
DTSPNEVVSDWLRSIPANGNMLALDDELNEEVQEVKEKEVVEEKPGEEVAKEEDSHDAEK
VDEEEADADEKEEGVKYDAVEGEKSADPAPGVAVGTSVRNTNLLLSGDSQPKNWHSSVAV
MKVLLGSSLSRSRSMPEVSPVYGRRLSTSAKGLLDCLAQLQLIEPAVSPGCDPQKDRKQQ
YDDIMAILQSLWLTDPKDIEVKKSSRDQVTPPRSSSGVGMSSGSNGSGKENVNQGGDEIP
PKETESLHEDEGAEKVEEEKEEEGNEEAGDQEIEAEAEPEPEPEETKPDTAEEPVQIDEQ
STTPPSLDSPKATDNPSSSDKSSVNDSSKSPTDNEREPEDSSSGTPPTVVRASLSKRLSQ
DPDPMWVLQLLKKLEKQFMNHYINAMAEFKVRWDLDDSLILDTMISELREEVSRRIQSSI
EREMKKIQSRAGRVGRSPRPPPGNLSRESTVTDRRRQMLKVMKNQSVKTAELSDNDIAGE
FSDQRSEDEYCPCDACVRKKMAERPFERNPLAPDAPLMMEFDLLKILQLKKSPSPAPTVS
TLPVEESESMVDEEGRNLEVVQEEEEEDETKEDIKAEVVLEETIPEEDEEEMGEEQEENY
GGDEEQEEGETGDEEAAEEGTSENGEEEEEEEEEEEEEEEEEEECQCCCARNEEESDKAE
EGEEGEGGAIPTVCVTEGEEADAEDSNTDSKRPSDTSADESGHEGAGATGDEEEKEGGGN
GDEEEAVEDAAEEFKPEEEEGEEIGGNWEDGALHHQVTRTSMESQPGSMEDIGRDSPQNP
VNAIEVPKKAADGSTGGVCQRRNRSPARAKRRKPKESDVA
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atgcattcggtccagacaggcatgtgggacccccggtccctatctaaacatgtctcgcca
ctccccccgccgcccctcaccaactcccgcctcacccgcgtgaccaaagccaccccggcc
aagcggatcaccttctacaaaagcggcgacagtcagttcgggggcgtaaggatggccatc
cacaagcgtagcttcaaatgtttcgacaccctgttggatgacctttctcaaaaggtgcca
ctgccatttggtgtgcggactgtgaccactccccgtggcctccatgccatcaaacacctg
gagcagctccaggacggtggctgttacctctgctctgaccggcgccacgctaagccaatc
aacatggagatggccagtaaacgcccaaatatgtggaccaaccacagccggagaccccag
cggcctgaagtctcacccacaacaccacccggccatttgccttacaggcagcggcggatc
cttctggtaaagaacagcgagccagggatgaggaggagtgtggtgttgagcaggaggtcg
accaggagtctgagggcatttcttgatgaggtgtccgaagtgatgcagtttcatgtccgc
aagctctacactccggagggacgaaggattgacagcattcagaccctgatgacttctccc
cctgttttggtgtgtgttggccgggaagccttcagtccactgctagtaaactatatcagg
aagagctcagaggaaaaactgcctggcttgggcaccaggtcccctggtcttggccccagg
actcctggaaatggagccaaatcccctgctactcaaggtccaagatctccacctcatgga
gctcagtcaagggccagcgagtacagtgaaggacatgagagcaaaaaaagtgttaacttt
ggtctggaaaccaaaaagagcatcatccaccctcgttctgattcctcaaaccgttccgcc
cgtttctctttgtcttcagagaagtcatacggcaatggtgtcagcacactctcccagggc
agaccagctattatgaatgatgacattgaaaagcgtgtcctagtcaataaagatggcagc
ctctcagtggagatgagggtgcgttttcgcctccaaaatgaagagaccttgcagtggtcc
acccagattaaaagatccccatctctgaccaatgactgttgtcctatgagtcaggcccag
cctcattacttgcagcagggccaatcagaaagctgctctgaccctgattccactaccttc
gagccagaggttgtggagtattccagccaacctctgcagcatgtgttggaagggagtggc
tgcccctgctgctatcagaggcaggaacagcagtacgacttgtgggaaaaccctgcacac
agccacaaacagcgtcctgccgcacccccgcataaatccagccacacccatactatgatg
agacatacacactcctctagctcttcctcatcatgtaactcaaggagagtggtgcgctgc
cgagctcaactctccaactgcggaggaggctctggttcagagcagagccaactggtccag
gaggagatgtgtgtgacagagcaggttgaacgcagagtagcagtggagcaacatggagac
acccatgtagaggtgtgcagagtgagccggtgctgcagtcgcagtgaagtgctcgctatt
gataaaaacctacggccagttagcaggaaatcagttgaggatgagctaatgctggaggaa
ggtgaccgtccgctctctgggatcagcagctcctcacatgtcctgcaatccctgaaagaa
gaccagtatgatgaggatgatgatctcccacccagcgcctcacagtgcggtaatagcaat
gaatcaacaccatccccaatctcccagacaggcaatgacaggccaacaggcaacattttg
gccggttcggtccactctaccaaacacaaggagcacaaggacactgaagagagaggaagc
agaacggtatcagcagcctgttcctgtcactgtggatctgccaccccaaactcaacaact
gaagcagatgaagtggatcgagcccccagctccaagtccagaacaagcagagcctcttgc
aggtccaccacagccaggaccccaaactcagaggagggggcagcagatgatgaggatgat
gaggtgaaaaaggttgttagtggcttgtctggtcacacaggactttcagcaggctcacag
cagtcaggagcacccagtgtaagtcataactgtgggggctgcaaacatggggtcaactcc
agttccagtagcagagcttcacagagctcacatcacaccaaccaagcctctccaaaacct
ggctcacctccccatgaccaagagaatgccaataatggcagtgaggaggatggctctgat
gtgtcggctgtgtcaacacaatccaacaaaagtaacctcaccaaccacgggcgctgctct
ccaatatcaaatgttgtggagggcagggcatctcgtgccatgtccagaacgtccaatctg
gagccagcagaaaaagaggaagaaagggctcccagtgccacctcagccacaagtcacagg
tccagcagatcgcataagtcttgctgtaatggtgccactgatgccacaactaaaaaagag
gaggagagaagccccagcgccatgtctgctcagtcaaacttgtctgccaagtccagcaag
tctcaaaagtccaacaaaaatggtacagtagaaactcttgacatcaaaacaagagatgaa
gcagagggacagaatgctgaagaaagagcaggtagctccttgtcagccaaatcttgtatt
tcggcaaagtccagtgcttcagtcaagtctcacaagtccaattgtccatcacgtattagg
gttgcctctccagctgacaatgcagctttggaagaggatgaaacaaacaatagagcttgc
aatagcctttctgttaagtctaccaaggaagaaagacctgatagtgtcctgtctgctaaa
tcagctaaatcagctaaatcaactaaatcaactaaatcaaatgtgtcaggaaagtccagc
aagtcccacaagtccacctgcagtcattatgtgagcgaaatttctccaggtgctaaagta
gctgatgatccaattgaagatgcaacaggacaggaaggagaaacagagttagaggaccga
gcagcgagccccttgtctgccaagtctaataaatcccgtaaatccaccaaagcttcgcaa
aggtcaacttcacccaggtcagaggctggaggagatgaggaagaaagggcagcaagtcaa
atgtctgccagatcagttaaatctaacacaactgtcaagtccaactgtaatggcaatgaa
aaggtagcagaggaagctgaagaagaagaaaatgagaatgtggaagaggaagaggaagaa
gaagaggaaacacagccaagaccagaaagtgtagcatctgccaaatcagaaaatgaagag
aggccagccagtgcagtgtcctgtaaatctaaaaagtctctctgtaatagcaacgcagat
gaaaaccgaagccccagcgctatgtctgggaaatcaaacacctctgccaagtctgccaag
tcccaagggtcaaagcacaccccagcatcgccaaatacagatgaagctgttgttccttct
acggagacaaatgaagaggagaagcaagatgaaaatcaagagcgggtggctagtgccatg
tctgtaaagtcaaaatcttcagtgaggtccagtacttcacacaagtcaaattctaaccag
catgttaaatcagtgttacctagttcaaatgttgtcaccattaaaacaccagaatgggtt
gatgaggaaggaaatgagacaacagagagaccaaccagtgctatatcagctaaatcagga
aaatctattgctgttattgaaacagcagatgcagatggaaagcaagaggaagacaatgca
ccaaaaattaaatcttctgaacactctaatggccaaacactttcacccaaggggacacga
tcaagaggacccagtgccttgtcagttcactccacaacctctgctaaatctggcaagtcc
aaatgtcactgtggaaaggcaaagaaagaaaaggagacggaggtcaaggaagtggagaag
aaagaagaggatgagaagctaaaaagcgaggatgataaagagccttcagatcgagcagcc
agtgtcctgtcttcctcctccaaaaaagagagagaatcagacgaccctgagccaccactg
agtcgaaactcatcaggttcagtatctcttgggttgccagaggaccaagaaacaggtgat
tcagacagtggcaagtcaaatgtttcatttcacgttaacactgggagtaagggcagagtg
aagaccgcaactccggatgtccgcaaaagtacaggggagtctactaaagaagatatggag
aaaacagagtctgctatgtctcaaaagtccaacattaatggtagtggaagcactttgtct
cacaatcttccagcagttgatataccaactattgaaacacctggaggaggtaacaatgaa
ggtgaagacggtgaagagcaaaaaacagaaagaccagccagtgaactttcagccaaaagc
agcaggtctcaaaagtcttcccgtagctgtaaagtcaaagcagcagctcgattgggtgac
agcaagcctaaagaacaacattctagtgccagcccaactaaagcaggaaatgaccatgaa
acaggaagtgtgaagtctgtgttaacgaaaaaagctaacaatctggatgcagttgacagt
aggaccccatctgcaatgtcatcagcaagtgctaaaattaggagcaaatcccctgcaagt
gccagtgctaaaaatgccagtgttgcaaaaacacctgctggagatttaacaaataatgac
gctgaaaacaaggcctccagcagaccagctagtaaaaccaaggggaaagatgtcacagac
gacgcggccagtgtctgctcaaagagtccctgttgcctcaggcctgggtctgcagcttca
gctaactcagtgtcaaaaatgaaagcctcaaagcagagtaaacaagatgatccagtcata
tcagaagatttgaatccagtcaaaggtgacagtggtagtgtcaagtctgttaaaccctca
aagccctgtccctcacacagctccaagccatccagcaaagtagagacgtgtagtgaaagc
actctgtgtcactctctgtccgctgctgacctgctgaaggaaaccatggccactacacgt
ccatacagtcgacagtcgaaggccagcgacaagccgagcagtgagaaaagtggcacgtgt
cagagaaacaagagccagaaggatcggaaagagctggaacggacacctgcctttctacct
gacacttcccctaatgaggtcgttagcgattggctgcggagcatccctgctaatggcaac
atgctcgcacttgatgatgagttgaacgaggaagtgcaggaggtgaaggagaaggaggtg
gttgaggagaaacctggagaggaggtagcaaaggaggaggatagtcatgacgctgagaaa
gtagacgaggaggaagctgacgctgacgagaaagaggaaggagttaaatatgatgcagtg
gagggggagaagagcgcagatccagctccaggtgttgcagtggggacttcggttcgcaac
accaatcttttgttgagtggtgattctcagccaaagaactggcattcttcagtagcagtg
atgaaagttctcctgggctcttctctgagtcgatctcggagcatgcctgaggtgtctcca
gtttatggtcgcagactgagcacatcagccaagggcctcttggactgtctggcccagctg
cagctcattgagcctgcagtgagccctggctgtgacccacaaaaggaccgcaagcagcag
tatgatgacattatggccatccttcaatccctctggctcacagatccaaaggacattgag
gtcaagaaaagcagcagagaccaggtgactccaccgaggtcctcatcaggggtgggtatg
agcagtggctctaatggatcagggaaagagaatgtaaatcaaggaggagatgaaataccc
ccaaaggagacagaatctctacatgaggatgagggagcagagaaggttgaagaagaaaag
gaagaggaaggaaatgaagaagcaggtgaccaggaaattgaggctgaagcagaaccagaa
ccagaaccagaagagacaaaaccagacacagcggaggaaccggtgcagattgatgaacag
agtacaacccctccaagtctggacagcccaaaagccactgacaacccctcatcttcagac
aagagctctgttaatgacagctccaaatcccccaccgataacgagcgagagccagaggac
tcaagctctggcacacccccaactgtcgtgcgagcatccttgtccaaaagactatcccaa
gaccctgatccaatgtgggtcctgcaacttctgaagaagctggagaaacagttcatgaac
cactacattaacgctatggcagagttcaaagttcgctgggaccttgacgacagcctaatc
ttggacacaatgatctccgaactgagagaggaggtgagccggcgcatccagagcagcatc
gaacgtgagatgaagaagattcagagtcgagccggcagagtggggaggtctccccggcca
ccaccagggaacctctccagggagtccaccgtaacagacaggaggcgtcagatgttgaag
gtcatgaagaaccagtcagtaaaaactgccgagctcagtgataacgacatagcgggtgag
ttcagtgaccagcgaagcgaagatgagtactgcccctgtgatgcttgtgtacgcaagaaa
atggctgaacgaccttttgaaaggaacccgctggcacctgacgccccactcatgatggaa
tttgacctccttaagatacttcagttgaagaaaagcccatcacctgcacctacagtttct
acactaccggttgaggaaagtgaaagcatggtagatgaggaggggaggaatttagaggta
gtgcaggaagaagaagaggaggatgaaactaaagaggatatcaaagctgaagttgtttta
gaggagactatcccagaggaggatgaggaagagatgggagaggagcaggaggaaaattac
gggggagatgaggagcaggaagagggtgaaacaggtgacgaggaagctgcagaagaaggg
acatcagaaaatggagaggaggaggaagaggaggaggaggaggaggaggaggaggaggag
gaggaggaagaatgccagtgctgttgtgccagaaatgaggaggagagtgataaagcagaa
gagggagaggaaggagaggggggggcgattccaactgtctgtgtgactgagggagaggaa
gccgacgcagaagactcaaacactgacagcaaacgtccaagtgacaccagtgcggacgaa
tcaggacacgaaggggctggagccacaggagatgaggaggagaaagagggtggaggcaat
ggagatgaagaggaggctgtggaagatgctgccgaggaatttaagcccgaggaagaggag
ggagaagagattggaggcaattgggaggatggcgctctgcaccatcaggtcaccaggacc
tcaatggagtcccaacctggctccatggaagacattggcagggattcacctcagaatcct
gttaacgccatagaagtgcccaaaaaggctgcagatggatccactggtggtgtgtgccag
aggaggaaccggtcgccagccagggccaaacgacgcaaacccaaagagagcgacgttgca
tag
DBGET
integrated database retrieval system
