Scomber scombrus (Atlantic mackerel): 134006638
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Entry
134006638 CDS
T10651
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
134006638 (sox1b)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134006638 (sox1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
134006638
NCBI-ProteinID:
XP_062301564
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All DBs
Position
24:8229704..8230765
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AA seq
353 aa
AA seq
DB search
MYSIMMETDLHSPVVPQTNPSNPGAHAGGGGGGGSKIPQERIKRPMNAFMVWSRGQRRKM
AQENPKMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTL
LKKDKYSLAGGLLGSSAGVGMGGGQRLESPGGGHAGANAGYATHVNGWANGTYSGQVAAA
AAAAHAMMQEAQLAYTQHPGTGAHPHHPHPHHHPHHHPHNPQPVHRYDMSALSYSPISNS
QSYMSASPPGYGGITGYTHQHQSSGVSPVSGALGGTLGSLVKSEPSVSPPVSTGRAPPPC
PTGDLRDMISMYLPTGEVAGDSSVQSRLHVLHPQHYQSSGSTPVNGTVPLTHI
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggaaacggacttacattcccccgtggtgccccagaccaaccca
tccaacccgggggcacacgcgggaggaggaggaggaggcggcagtaaaatcccccaggag
aggatcaagagacccatgaacgccttcatggtctggtcccggggccagaggcggaaaatg
gcacaggagaaccccaagatgcacaactctgagatcagcaagaggctgggagcagagtgg
aaggtgatgaccgaggcggagaagagaccgttcatcgacgaggcgaagcggctccgggcc
atgcacatgaaggaacacccggactacaagtaccggccaaggaggaagaccaagacgctg
ctcaagaaggacaagtactcgctggccggcgggctcctcggctcctctgcgggtgtaggg
atgggcggcgggcagcggctggagagtcccggagggggccacgcaggtgcgaacgcgggc
tacgccacgcacgtgaacggctgggcaaacggcacctactcgggccaggtggcagctgcc
gcggcggcggcgcacgccatgatgcaagaggctcagctggcatacacacaacacccgggc
acaggggctcacccgcaccacccgcatccgcaccatcacccgcatcaccacccgcacaac
ccgcagccggttcacaggtacgacatgagcgccttatcttacagccccatctcaaactct
cagagctacatgagcgcctccccgccgggctatggcggtatcaccggctacactcaccag
caccaaagctccggtgtctccccagtgtcaggagcgctcggagggactttggggtccctt
gtgaaatctgagcctagcgtgagccccccggtctcaacggggcgcgcgccgccgccgtgc
cctacgggggacctgcgggacatgatcagcatgtatttgccgaccggcgaggtagcgggg
gactcctccgttcagagcagactgcatgtgctccacccgcagcactaccagagcagcggc
tccactccggtaaacgggacggttcctctgactcatatttaa
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