Scomber scombrus (Atlantic mackerel): 134006653
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Entry
134006653 CDS
T10651
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134006653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
134006653
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134006653
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
134006653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
Ig_DSCAM-DSCAML_C
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
134006653
NCBI-ProteinID:
XP_062301586
LinkDB
All DBs
Position
24:10111511..10150404
Genome browser
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCATNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSSGLPLPLPLPAPHSGPNSPGEEGSNRL
ALVPVNAAMSSPGTPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHDEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEK
LRQALDTNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLLDECDLLIDIIQQRRQ
IIGNKIKEGKAHRLRKLAQQISNCQQCIERSSALITQADQTLKETDHARFLQTAKSINER
VSMATASTQVLIPEIHLTDTFDTFALDFTREKKLLESLDYLTAPSAPAIREELCTASYDT
ISVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHN
QDRFTSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYLTFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILTGLPIPDHLEGLEPED
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgcccaatctgcctggagctctttgaagacccg
ctgctgctcccttgcgcccacagcctgtgcttcggttgtgctcaccgtatcctcgtctct
cactgtgccacaaacgaatctgttcagagtatcggcgcattccagtgccccacctgtaga
tatgtcatttccctgagtcctgagcgtggattagagggacttaagagaaacgtgaccttg
cagaatattattgatagagttcaacgagcctcatcttcatctgggctgcctctaccgctg
cctttgcctgcgccccacagcgggccaaactctcccggagaggaagggagcaaccgtttg
gcgttggtccccgtcaacgccgccatgtccagcccaggtacgcctccggagccggtccag
tgccagttctgtgagcaggacccgccacaggatgctgtcaagacgtgtgtgacgtgcgag
gtgtcgtactgcgaggagtgtctccgtgcaacgcaccctaacaagaagccgttcaccggc
caccggctcatcgagcccatgccggactcccacctgcgagggctgcagtgcctggagcac
gatgaggagaaggtgaacatgtactgtgtcactgatgatcagctgatctgctcactgtgc
aaactggtgggaagacacagagaccaccaagtggcagcactgagtgaccgctatgaaaaa
ctcaggcaagccctggataccaacctgagtaatttgatcaagaggaacaacgagctggag
tcacttatgggcaaactgattcagacttgtcaacatgtagaggtgaacgcgtcccgccaa
gagggcaagctgctggacgagtgcgatctcctgattgacattattcagcagaggaggcag
atcattggcaacaagatcaaggaggggaaggcacataggcttcggaagctagcccaacag
atctccaactgccagcagtgcatcgagaggtcctcggctctcatcacacaggccgatcag
acgctgaaagagaccgatcacgcccgcttcctgcagactgccaagagcatcaacgagagg
gtttccatggcaactgcatcaacccaagtgctaatccctgagatccacctcactgatacc
ttcgacacctttgccctagacttcaccagagagaagaaactgctggagagtctggattac
ctcactgctccaagtgctccagccataagggaagagttgtgcacagcttcctacgacacc
atctctgtccactggacgtctgatgatgaattcacagtggtgtcctatgagctgcagtat
gccatcttcactggacagtccaacattgccagtctgtgtaactcattggagagctggatg
attgttccaaacatcaagcagaaccactacaccgtgcacggtctgcagagcggcaccaag
tatatctttgttgtcaaggccattaaccaagcggggagcaggagcagtgaaccggggact
ctgaaaaccaacagccagccattcaagctggatcccaaatctgctcacaagaagctgaag
gtctcacatgataacctgacagtggagcgggacgaaaccacgtccaagaaaggccacaat
caggaccgtttcactagccagagcagctatggcgtggtagggaacgtctacatcgacagc
gggcgccactactgggaggccctgattggagggagcacatggtacgctgtgggtatagcc
tacaagtcagcccccaagcatgagtggatcggcaagaactcagcctcttgggtgctctgc
cgttgcaacaactcctgggtggtgcgccacaacagcaaggagcttgctattgagccttca
ccccacctgcggcgtgtcggggtcctgttagactacgacgccggctacctgaccttctac
gacgccgtgggctcccagcacctgcacacgttccatgtctcctttgttcagcctgtgtgt
cctgtgttcaacgtgtggaacaagtgtctgacgattctcactggcctacccatccccgac
catctggagggactggagcccgaggactga
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