Syngnathus scovelli (Gulf pipefish): 125966790
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Entry
125966790 CDS
T08785
Symbol
lamp1a
Name
(RefSeq) lysosome-associated membrane glycoprotein 1a
KO
K06528
lysosomal-associated membrane protein 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03272
Virion - Hepatitis viruses
sscv03273
Virion - Lassa virus and SFTS virus
sscv04140
Autophagy - animal
sscv04142
Lysosome biogenesis
sscv04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125966790 (lamp1a)
03272 Virion - Hepatitis viruses
125966790 (lamp1a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
125966790 (lamp1a)
04142 Lysosome biogenesis
125966790 (lamp1a)
04140 Autophagy - animal
125966790 (lamp1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125966790 (lamp1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125966790 (lamp1a)
04090 CD molecules [BR:
sscv04090
]
125966790 (lamp1a)
Membrane trafficking [BR:
sscv04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
125966790 (lamp1a)
Autophagy
Chaperone mediated autophagy (CMA)
Cargo receptors
125966790 (lamp1a)
Other autophagy associated proteins
RNautophagy/DNautophagy
125966790 (lamp1a)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of hepatic cells
125966790 (lamp1a)
CD molecules [BR:
sscv04090
]
Proteins
125966790 (lamp1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lamp2-like_luminal
Lamp2_2nd
VAS1_LD
DEC-1_N
Motif
Other DBs
NCBI-GeneID:
125966790
NCBI-ProteinID:
XP_049573201
LinkDB
All DBs
Position
4:22590689..22594262
Genome browser
AA seq
420 aa
AA seq
DB search
MKRSVTCGSMLLLSVLFAVFGSLQAVTLEVSERNSTCIKAELSALLSITYNTSSTLRTVQ
VPLPNTTTVDAASSRCGSVSSSPWLVAAFGSGHALGLNFSTNGSLYNVASLMLQYNLSDS
SIFPDANSSAVVTVLSASAGIWAAINTTYHCASATSVGVGGQTVTFSDMRLEAYMPQNDL
SSDETICAADQALTTTSIPSTTSRPPITPAPAPTPPGPPERGNYSIRNSTGTVCLLAQMG
LQLNFSYVSQAQNQTVQEFFNLAPNLTISSGSCEDNSAILVLSQGRSTTLNLTFTLNSTA
SKYYLSGINMIANRSDMTAPFSAGNTSLNYLRTTQGRSYMCNAEQTLAVVPSFSLNTFRL
QVQAFNLTNNQFATAEECQIDQDDMLIPIIVGAALAGLVLIVLIAYLIGRKRSHAGYQTI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctccgtgacttgcggttcgatgttgctcctcagcgtcttgtttgctgtgttt
ggctcgctccaggctgttactcttgaagtgagcgagaggaactcgacgtgcatcaaggct
gagctctccgcgttgttgtccatcacgtacaacacttccagcaccttgagaaccgtccag
gtgccgctgcccaacacgaccacagtggacgcggcaagcagcagatgcggctcagttagc
agcagcccgtggctggtggcagcgtttggatctggacatgcactggggctgaacttctca
accaatggaagtctttacaatgtggcttccttgatgctgcagtacaaccttagtgattcc
tccatcttccccgatgccaacagctctgctgtggtaaccgttctgtcagcttcggccggc
atctgggcagcaatcaacaccacctaccattgtgcgagcgccacctcggttggagttggg
gggcaaacggtcaccttctctgatatgagacttgaagcttacatgccacaaaatgatctg
agttcagatgaaacgatatgcgctgcagatcaggcgcttaccaccacaagcattccgagc
accaccagccgtcctccaatcacaccggcaccagcacccacaccacccggacctcccgaa
cgggggaattactccattcgcaacagcaccggcacagtttgtctcctggcccaaatggga
ctacagctcaatttctcctatgtctctcaagctcagaatcagactgttcaggaatttttt
aatctcgctcctaatctgacaatttcttctggatcatgtgaagacaacagcgctatctta
gttctgagtcagggcaggagtaccacactcaacctcacctttacactgaattccacggcc
agcaaatactaccttagcgggataaatatgattgccaaccggtctgatatgacagctccc
ttttcagccgggaacaccagcctgaactacctgcgtaccacccagggacgttcttacatg
tgtaatgcggagcaaactctggctgtggtgccaagcttctctctcaacacatttcggctg
caggttcaagcctttaacctcaccaacaaccagtttgccacagcggaggagtgtcagatc
gatcaagacgatatgctcatccccatcatcgtcggagcggcccttgccggactggtgctg
atcgttctcattgcgtacctaatcggccgcaagaggagccacgctgggtatcagacaatc
tga
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