Syngnathus scovelli (Gulf pipefish): 125966826
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Entry
125966826 CDS
T08785
Symbol
sema6d
Name
(RefSeq) semaphorin-6D isoform X1
KO
K06842
semaphorin 6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Squash
LapA_dom
Motif
Other DBs
NCBI-GeneID:
125966826
NCBI-ProteinID:
XP_049573253
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Position
4:12529107..12548819
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AA seq
1109 aa
AA seq
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MGHRAALLGELLRLLLLLTASRTLLAVSFPEDIAPLDVVDAHFSRRYPVFRGRPSGNESQ
HRLDFQLMTKIQDTLFIAGRDQVYLVSLRESYRNEIIPYRKLTWRSGQADKEMCAVKGKH
RDECHNFIKVLVPRNDDLVFICGTNGFNPMCRYYRLDNLELDGEEINGLARCPFDSKQTN
VALFAEGKLYSATVADFQASDSVIYRSMGDGSALRTIKYDSKWLKEPHFLHAAEYGNYVY
FFYREIAVEHSNLGKVVYSRVARICKNDIGGSQRVLEKHWTSFVKARLNCSVPGDSFFYF
DVLQSITDIININGVPSVVGVFTTQMNSIPGSAVCAFSMADIEKVFRGRFKEQKTADSIW
TPFPEEKLPKPRPGCCAGYGPAASFKSSIEFPDETLQFIKSHPLMDTAVPSMEDEPWYTK
TRVRYRLTALAVDNEAGPHKNYTVVFIGSESGVVLKVLAKTSSMSLNDSLLLEEIDVFNK
AKCLSNHDDDKRVLSLHVDKDAHSLYVAFSSCVIRIPLSRCERHSSCHKSCIALRDPYCG
WRPQGACERIQPGLLTGYEQDIELGNTGHLGDCQAFLGTTSAPDYKSFGDPTSDMAFSSA
PVTVPPSGPIPPPVLIPTQSPSSGPVPELYGSGFVLQDDPATSHSLDSLPGGQEGVWDIQ
ASETSQMVHMNILITCVFGAFLMGALLAGLIVFCNRESFMRKQRRVHKDAESAPSCSDSP
GSFVKLNGLFDSPVKEYQTNVDSPKLYTNLLSKDLKTPNGDTKTMILRDGCPPPELAALP
TPESTPVLQQKGLQPIKNQWERDHRKISGHRKESNSTAKSPQFLLPSPGPPKSNPHHPHL
ALGHSHIPSAVVLPNATHDHPYLDNGDDTLPHPSDKKLKNPETKGSRKDQKRSVDARNTL
NDLLKHLNDSVANPKAILHEGSGPRSRQHLTLEPMEELTELPPRVPSREASLYSPSSSLP
RHSPTKRVDVPLCTSPTTPTGSLSMGGTLERPRGGYQLQRSASHRHSLSTSTNGVTMGVS
VSRQHSMNRGAYMPPTPPSRLDSHVGMMGAGMHSPNPPSLSRQSSYSGHGSLPRTGLKRT
PSLKPDVPPKPNGFAPQTPQMRMVNKYSY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgggccacagagctgcacttctcggtgagctgctgcggctgctgctgctgctaacagct
tcacgcactctcctcgcagtcagcttccccgaggacattgcacccctggatgtcgttgac
gcacacttttcacggaggtaccccgtgttcagaggcaggccctctggtaacgagtcgcag
catcgccttgactttcagctgatgaccaagatacaagacacgctcttcatcgctggcaga
gatcaggtataccttgtaagtttgagagaatcctacaggaatgagatcatcccttaccgg
aagctgacatggcggtcgggccaggcagacaaagagatgtgtgccgtcaagggaaaacac
agagatgagtgccataacttcatcaaagtgctggttcccagaaatgacgatctggtcttc
atctgtggcaccaatggctttaaccccatgtgcagatactacaggctggataacctggag
ttggatggtgaagagatcaatgggctggcacggtgcccatttgactccaagcaaaccaac
gttgccctttttgcagaggggaaactgtattccgccacggtggctgactttcaggctagc
gattctgtcatttaccgaagtatgggagatggatccgccttgaggaccatcaaatacgac
tccaagtggcttaaagaacctcatttcctgcacgcagccgagtatgggaattatgtgtac
tttttctaccgagagattgcagtggagcacagcaatctgggcaaggtggtctactctcgc
gtcgcccggatctgcaaaaacgacattggcgggtcgcaacgcgttctcgagaaacattgg
acatcttttgttaaggcgagactgaactgctccgtgccgggggattccttcttctacttt
gacgtgcttcagtccattactgacatcatcaacatcaacggcgtcccgtctgtggtgggc
gtgttcaccactcagatgaacagtattccagggtcagccgtgtgtgctttttctatggcc
gacatcgagaaagtcttccgtggtcgatttaaagagcaaaagaccgccgactccatatgg
acgccgttcccagaggagaaacttcctaaacctcgacccgggtgctgcgcaggttacggt
ccagctgcatcctttaagagctccatcgagttcccggatgaaaccctacagttcatcaag
tcacaccctctaatggacacggctgtgccttcgatggaggacgagccctggtacacaaag
acgcgtgtcaggtacaggctgactgcgctggcagtggacaacgaagcgggcccgcacaag
aactacacagtggttttcatcggttcagagtcaggagtcgtgctcaaggttttggcaaag
acctcgtccatgtccctgaatgacagtctgcttctggaggagatagacgtctttaacaag
gccaagtgcttgtctaatcacgacgatgataagcgtgtcctatcactgcacgtggacaaa
gacgcacatagcctgtacgtcgccttttcaagttgcgtcattcgaattccgctgagtcgc
tgcgaaaggcattcttcctgccacaagtcttgcattgcattacgtgatccctattgtgga
tggaggcctcaaggagcctgcgaaaggatacagcccggtcttttgacgggctatgagcag
gatattgaattaggaaacactggccacttgggagactgtcaggcatttttgggcactaca
tcagcgccagattacaaatcatttggcgaccccacctctgacatggcgttttcatcagca
ccagtcactgtcccgcccagtgggcccatacctcccccagtactcattcccactcagagc
cccagttctgggcccgttccagagctctacggctcgggttttgtgctgcaggatgacccg
gccacctctcattctttagactctctcccaggggggcaagagggtgtgtgggatatccaa
gcaagtgaaaccagccagatggtccacatgaacatcctgatcacctgcgtgtttggtgct
tttctcatgggcgctctactagctggcctgattgtcttttgcaatcgggaatcattcatg
cgaaaacaacggcgtgtccacaaggatgcggaatcggctccatcctgctcggactcccct
ggaagtttcgtcaagctcaatggcctcttcgacagtcctgtaaaggagtaccagaccaat
gtggattctcctaagctgtacaccaacttgctgagtaaagacctgaaaacgcccaacggc
gacaccaagaccatgatcctgcgggacggttgtccgcctcctgaattggccgctctgcca
acacccgagtctacccctgttcttcagcagaaaggcttgcagcccattaaaaaccagtgg
gagagggatcacaggaagatcagcggccaccgcaaagaatccaactcgacggcaaagagt
ccccaatttctccttccttcacccggtccccccaaatccaacccccaccacccccacctg
gccctgggacattctcacatcccgagtgcagtcgtcctgcccaatgccacacatgaccat
ccgtaccttgacaatggagatgacactctgccacatccttctgataagaagctgaagaat
ccggaaacgaaaggaagtaggaaagaccagaagcggtcagtggacgcgagaaatacacta
aacgaccttctaaaacatctcaatgactccgtggccaaccctaaggccattcttcatgag
ggatcggggccacgctctcgacaacacctcacactggaacccatggaggaactaacggaa
ctacctcctagggtgccaagtcgcgaggcctctttgtactctccttcctcctccctgccc
aggcacagccccaccaagagggtggacgtccctttgtgcaccagtcccaccacaccaacg
ggcagcctaagcatgggtggaaccttggagaggccaagagggggctatcagctccaaagg
agtgcttctcacaggcactccctgtccacctcaaccaatggggtgactatgggggtatct
gtgtctcgccagcacagtatgaacagaggggcatacatgcctccaacgcccccctccaga
ctagattcccatgttggaatgatgggggctggaatgcactcgcccaaccctccctcttta
tcccggcaaagcagctacagtgggcatggctcacttcctcgtacaggacttaaaaggacc
ccatcgctaaagccagatgtgcccccgaaacctaatggctttgcgccacagactccacag
atgcgaatggtcaataagtacagctattag
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