Syngnathus scovelli (Gulf pipefish): 125966868
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Entry
125966868 CDS
T08785
Symbol
fn1b
Name
(RefSeq) fibronectin 1b isoform X1
KO
K05717
fibronectin 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04518
Integrin signaling
sscv04810
Regulation of actin cytoskeleton
sscv04820
Cytoskeleton in muscle cells
sscv05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125966868 (fn1b)
04518 Integrin signaling
125966868 (fn1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125966868 (fn1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125966868 (fn1b)
04810 Regulation of actin cytoskeleton
125966868 (fn1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125966868 (fn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125966868 (fn1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125966868 (fn1b)
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125966868 (fn1b)
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125966868 (fn1b)
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
125966868 (fn1b)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
125966868 (fn1b)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125966868 (fn1b)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
125966868 (fn1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
fn1
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_PBP1
Fn3_VIN3
fn2
Fn3_Dep-1_2nd
Fn3_Dep-1_3rd
Fn3_ROS1
NDNF
Interfer-bind
FN3_Tor_3rd
Glyco_hydro_66
DUF5979
Ig_RIMBP2
Motif
Other DBs
NCBI-GeneID:
125966868
NCBI-ProteinID:
XP_049573323
LinkDB
All DBs
Position
4:11773470..11794754
Genome browser
AA seq
2443 aa
AA seq
DB search
MAGVPLTSVLVALCVCSAVVHGVPKNKRQSGQYQVYPDFHDTEAISTVGCEENGRSFRVN
EQWEKPYRGSTLLCTCNGAQGIKCKTKPEVEESCYDKYNDRTYRVGETYERPKDGMMWDC
TCIGSGRGKISCTIANRCHEGGRSYKIGDTWQRPHDTADYMLECVCLGNGKGEWTCKPVA
ERCYDNNAASSYVVGETWEKPYQGWMMLDCTCLGEGNGRITCTSRNRCNDQDTKRSHRIG
DTWSKNDANGHTLQCLCLGNGRGEWKCERHNAGQGTGSVVVSPLHPQLELEIPTEGTCRT
DSGATYYDGQRWIRSQGSKQMLCTCLGNGVSCQEWEARSQVYSGNSNGQLCVFPFVFMGK
TYYSCTTDGRTDGQLWCSTTSDYERDQQYSYCTEKTAIVATRGGNSNGALCHFPYLYSGR
NYTDCTSDGRRDSMKWCGTTYNYDADQHFGFCPMAAHEEVCTTNDGVMHRVGDKWDKRHD
VMGHMMECTCLGNGRGEWNCIAHSQLRDQCIVEGLTYDVNQEFSKRHDEGYMMNCTCYGQ
GRGRWKCDAIDQCQEPQTRAFYQIGESWDKVIHGIHYRCYCYGNGIGEMRCEPQQNYQGG
HRPVQVIITEAGKQPDSHPIQWNPPSSVQITQYILKWKIKNSRSPWKEVVVPGNLNSYTI
SGLRPGVTYEGQLISILRYGQRETTRFDFTTTHGSLETSEGETNKPPTLVDTSESVTEIT
SNSFVVSWTSASATISGFRVEYELSEEGAQRQVLDLPRTSTSVSIGNLLPGRRYNVNVYE
LPDEGDANLILSTSQTTAPDTPTQHAIDDVGETSIRIRWSRPQAPITGYRVVYTPSVEGS
STELNLPESETSVTLVDLHPGVLYNISIFAVEEYQESEPVFVQVHTAGSSQPEEVAAPTD
LQFYEVTDVKITLTWNGPPSEVTGYRVTFSPVAPDGTEIRPLQLPVSPNAYADITHLQPG
TLYRFYVYAINGGVESEPLMGEMFTKPDAPTSVQFTDIGPDNALVNWEAPRASVSGYRLF
LSIQGSSPVEKRIPGDVTQYALRNLRPETDYTATLHSELNSVLSEPITTLFTTAPQMGNA
PAFSTEVTDTSIIISWIPVRRFSYKLSVLPSQQGESPKHKTSDTGRLYVSGLIPGTQYTY
SVQPIFNGRPRGSAITRNVVTSLSPPTDLRVQSNSDTGDLAVHWTASKTPDITGYRVSST
PTSGQKGNSIEEFVRADQTSCVLENLNLGVEYNISVFTVKEHLESLPVSTIITPDIPPPR
HIRFVDITDTTIGLRWIPLNYSTITGYRITVATAGENLPIFQDMVDASAGYYTLRGLEPG
VDYVISIVTVTEEGESEPTAHTKQTQAVIPAPTNLQFGGVGPDHIRVTWTVPHVAIPSDI
SRFVIRYSPVTDDRDFKEVNVGGASNTFLLENLLPDTEYRISVVYIYGERESNPATATQR
TAVDSPTALDFSDIQTNSFTINWRAPSASITGYRIRHQKTSGGRTKDERLPPSRTYYTLT
GLTPETEYLIAVYAVKGNQESQPVTGTQATISDAPTDLEVVSSSPTSITIRWDAPSVAVN
QYRITYRGTSGGAPQEFTIPGTQTTATITDLQPGSDYTITVYAVTGRGDNPASNTPVYIT
HKTDIEPPASMDVTDVSDNAITVRWAPARGPITGYRVTGAPKNGLGPSYSRDVSPAQTEM
TLTGLMPTVEYVVSVSALGTDGQPSSAVVENAITAMDRPKDLTFSDIDANSMRIAWDSPE
GAVTSYRVLYSSPEDGERELRPSPRGDQDSVAIKGLRAGTEYTVKVIALHGRTPSTPLVG
TQATVIPAPTNLLISEVEPTSFAASWQAPNARLSGYRVVVNPENINSPAKELNVSPDTTR
VVIPGLMVATRYQVHVYALKNSVTSRPLVGEATTLEDLSPPKRVNVKDVGDSSFTLSWRA
KVETITGFLLEATPQGSSRPTITKTIPADVYTYTVKGLQPGTTYSINLYTLNGNTRSAPN
TLTVQTAKPVVQAPTNLQVTSLNPTDISFTWQPPATSITGYYVTYGEPRATPQELKPRPH
AGQNYATISGLKPATEYIIKIVAIQNTQRSTPLVGRIRTRPDSLLPVPQPHRPGGTTDLD
NRVQLVGNNNQDGLGGQSQHVEYTEYNNNNRPTPQTPYGQVQEPLVFVPLPDAGGRRKPY
VKLNVPYGTIFANETGLPQEAQTRTSISWNPYSQSNAYLVSCNPVTHLDEKMFQVRLPGS
ATTATLIGLTPGADYNVIVEALKGALKHKVLEQLVTAENTVQEGVPPTDDACYDTYTATY
HDVGTQWERMSETGFKLWCTCLGLGRGHFRCDSSKWCHDNGQNYRVGDKWDRQAENNHLM
SCTCLGNGKGEFKCEPHESVCYDEGKTFQVGNQWQKEYLGAICTCTCYGGQQGWRCENCR
KPASDADASVVQPVQYGKNIHCPIECLRPDLLADTLAVRDPLE
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgtcccactcacgagcgttctggtggctttgtgcgtgtgcagcgcagtggtc
cacggtgtgccaaagaataaacgacagagtggacagtatcaggtgtatcctgatttccac
gacaccgaggctatcagcacagttggctgcgaggaaaacggtcgctcattcagagtgaac
gagcagtgggagaaaccttaccggggcagcacgctgttatgcacctgcaatggagcacaa
ggcatcaaatgtaaaactaagcctgaagtggaggagtcttgttatgataagtacaatgac
cggacataccgggttggtgaaacttacgagagaccaaaggacggaatgatgtgggactgc
acttgcatcggatctggtcggggcaagatcagctgtaccatcgcaaatcgttgccatgaa
ggcggaaggtcttacaaaatcggtgacacctggcagaggcctcatgatactgcggactac
atgctggagtgtgtgtgtcttggaaatggcaagggagagtggacctgcaagcctgtggct
gagcgttgctacgacaacaatgccgcctcatcgtatgtggtgggagagacgtgggagaaa
ccctaccaaggctggatgatgctggactgcacttgcctgggcgagggaaatggccgtatt
acgtgcacctcaaggaatcgttgcaatgaccaagacaccaaaaggtcccaccgcattgga
gacacatggtcaaagaatgacgccaatgggcacacgctgcagtgcttgtgtttgggaaac
ggtcgtggagagtggaagtgtgagcgccacaatgcaggccaaggcacaggttcggtggtg
gtgagcccactccatcctcagctggagctagagattcccactgaaggaacctgtcgcacg
gactctggagccacctactacgacggacagcgttggatcaggagccagggcagcaagcag
atgctctgtacttgtctgggtaacggagtcagctgtcaagagtgggaggcccgcagccag
gtgtacagcggcaactccaatggtcagctatgcgtattcccatttgtgttcatgggaaag
acctactactcgtgcaccacggacggacgcacagatggccagctctggtgttccaccacc
tccgactatgagcgagaccagcagtactcttattgtactgagaaaactgccattgtggcc
acacgaggaggcaactccaatggcgccctttgccactttccttacctgtacagcggccgc
aactacaccgactgcacatcggatggccgtcgtgatagcatgaagtggtgcggaaccacg
tacaactatgatgctgatcaacactttggattctgccccatggctgctcacgaggaggtg
tgcaccactaacgacggagtcatgcaccgcgttggtgacaaatgggacaaacgacatgac
gtcatggggcacatgatggagtgcacatgcctcggaaatggtcggggggagtggaactgt
atcgctcactcacaactgcgagatcagtgtattgtggagggcttgacctatgacgtcaat
caggagttctccaagcgccacgacgagggctacatgatgaactgtacttgctatgggcag
ggacgcggacgctggaagtgtgatgctattgatcagtgtcaggagccacagacaagggcg
ttctatcaaatcggagagtcatgggacaaagtcatccatggcatccactatcgctgttac
tgctatggcaatgggattggagaaatgaggtgtgaaccccagcagaattaccaaggcggc
cataggccagttcaggtcatcatcacggaggcgggcaaacagcccgactcgcaccccatc
cagtggaaccccccctcatctgttcagatcacgcagtacatcctcaaatggaagattaaa
aattctcgtagcccctggaaggaggtggtcgttcccggtaacctcaactcctacaccatt
tccggtctgcgtccgggggtcacctatgagggtcagctgatcagcatcttgcggtacgga
caacgtgagaccacacgcttcgatttcaccaccacccatggttctttggaaacctcagag
ggagagacaaacaaacctccaacgctggtcgacacctccgaatctgtgacggaaatcact
tccaacagcttcgtcgtgtcctggacgtcggcctcggccaccatctccggctttagggtg
gagtatgagctcagcgaggaaggtgcacagcggcaagtcttggatcttcctcgaacatcc
acttctgtcagcatcggtaacctcctgccagggcgcagatacaacgttaacgtctacgag
cttccggacgagggcgatgccaacctcatcctgtccacatcccaaacgacagctcctgac
actcctactcagcacgctatcgatgatgtgggagagacctcgatccgcatcagatggtcc
agacctcaagctcctattactggttaccgtgtggtctacacgccatccgtggagggcagc
agcaccgagctgaacctgcccgagtcagagacctctgtgaccctggttgaccttcacccg
ggtgtactgtacaacatcagcatctttgctgtggaggaataccaggaaagtgagcctgtt
tttgtccaagtccatacggctggatcttctcaaccagaggaggtggcagcccccaccgac
ctgcagttttatgaggtcaccgatgtgaagatcaccctcacatggaatggaccacccagc
gaggtgacgggttacagggtgaccttttcccccgtggcgcccgacggcaccgagatcaga
cccctccagttgccggtgtcgcccaacgcctatgctgacatcacccacctgcagccaggc
actctgtaccgcttctatgtctatgccattaacgggggtgtggagagcgagccactgatg
ggagagatgtttaccaaaccagatgctcccaccagcgtgcagttcaccgacatcggtcca
gacaacgctctggttaattgggaagctccccgtgcctcagtatctggctatcgtctcttc
ttgagtatccagggctccagtcctgttgagaaacgaatccccggtgatgtcacccaatac
gcgctgaggaatttgcgtcctgaaaccgattatactgctactctgcactctgagctgaac
agtgtgcttagtgagcccattaccacgcttttcaccacagctccccagatgggaaacgca
cctgcgttcagcacagaggtcaccgatacctccatcatcatctcctggatacccgtccgc
aggtttagctacaagctgtctgtgctccccagccagcaaggagagtctccaaaacacaag
acctctgacactgggcgcctttatgtcagcggtttgattcccggaactcagtacacatac
agcgttcagcccatcttcaatggacgccctcgtggaagtgccattacccgcaacgttgtc
acctctttgtctcctcccactgacctgagagtccagtccaactctgacacaggagatctc
gctgtccactggacggcctccaaaacaccagacatcaccggctacagagtgtccagcacg
cctaccagtggacagaaaggaaacagcatcgaggaatttgtgagggctgatcaaacctca
tgcgtgttggagaacctcaatcttggggtggagtacaacattagcgtgttcaccgtcaag
gagcatttggaaagtctgcccgtgtccactattatcaccccagacatacctccaccgaga
catattcgctttgtcgacattactgacaccaccattggcctgcgctggatcccactgaac
tattcgacaataacgggttaccggataacggtagcgacggcgggcgagaacttgcccatt
tttcaagatatggtggacgcatcagctggttattacacgcttcgtggtttggagcccggc
gtggactatgtcatcagtatcgtcacagttacggaagagggggaaagcgagccaaccgca
cacacaaagcaaactcaagcggtgattccagctccaaccaacttgcagttcggaggtgtg
ggtcctgaccacatcagagtcacatggacagtcccacacgttgccattccgagcgacatt
tctcgctttgtcatccgctacagccctgtgactgacgaccgcgattttaaggaggtcaac
gtgggcggagcctccaacaccttcttgctggagaatttgcttcctgacacagaatatcgc
attagtgtggtatacatttatggagaacgagaaagcaaccctgccacagcaacacagagg
acagctgtggattccccaactgctttggacttttctgacatccaaaccaactcctttact
attaactggcgggctccgtccgctagcatcacgggttaccggatccgccatcagaagaca
agtggtggacgcaccaaggatgagagacttccccctagcaggacttattacactctgacc
gggctgactcctgagaccgagtacctcatcgctgtgtacgctgtcaaaggcaaccaggag
agccaacctgtgacgggcacacaggccaccatttctgatgctcccactgacctggaagtc
gtgtcgtcttcgcccacaagcatcaccattcgatgggacgctccctctgttgccgtcaat
caataccggatcacttacagaggcaccagtgggggagcgcctcaagagttcaccatccct
ggtactcagaccacagccaccatcaccgatctgcagccgggtagcgactacaccatcacg
gtttatgctgttaccggaagaggggataaccccgcctccaacaccccggtctacatcaca
cataagactgatattgagccgcccgctagcatggatgtgactgatgtgagcgacaatgca
atcacagtacgctgggctcctgctcgggggcccatcacaggctatagagtcactggcgca
cctaaaaatggccttggaccatcctactcaagggacgtgtctcccgctcaaactgagatg
accctcacaggcctgatgccaactgtggagtacgttgtgagcgtctctgccctgggcact
gatggccagccttcctctgcagtggtggaaaatgccatcacagcgatggatcgtccaaag
gatctgaccttctctgacatcgatgccaactctatgcgcatcgcttgggacagtccagag
ggcgcagtcacatcctaccgcgttctctactccagccccgaagatggcgagagggagctg
cgtccgtcacccagaggcgatcaggatagcgtggccataaaaggccttcgggctggaacg
gagtacactgtcaaagtcattgctctccatggccgcacacccagcacaccattggtggga
acgcaagccacagtcattcccgctcccaccaacttgctcatctcagaggtggagcccact
tcctttgccgcgtcgtggcaggcacctaacgcacgactgtcgggataccgtgtggttgtc
aacccagagaacatcaacagtcccgccaaggaactcaatgtttctcctgacacaacacgc
gtggtcatacccgggcttatggtagccaccagataccaggtccatgtctatgctctgaag
aactccgtcaccagcagaccactggtgggagaggcaaccacactggaagatctaagtccg
cctaagcgtgtgaatgtcaaggatgtgggggacagctctttcaccctcagctggcgtgct
aaggtggaaaccattaccggtttcctccttgaagccacgccccagggtagctcccgtccc
actatcaccaagaccatcccagcagatgtatacacatacactgtcaaaggtctccagcca
ggcaccacatattccattaacctgtacactctgaacggcaacacaaggagcgccccgaat
acacttactgtccaaacagctaaaccggtcgtccaagctcccaccaaccttcaagtgacg
tctttgaaccccaccgacatctcattcacctggcaacctccagccacgtccatcacgggt
tactacgtcacctacggggagcccagagccactccacaggagttgaagccacggccccac
gctggacagaactacgccaccatatctggcctgaaaccagccacagagtacatcatcaag
attgttgccatccaaaacacacagaggagtactccacttgtgggacgaatcaggactcga
cctgactccttgctccctgtgccgcaaccccatcgccctggaggtaccactgatctggac
aatagagttcagctagtgggaaacaataaccaggatggtctcggtggtcagagccagcat
gtggagtatactgagtacaacaacaacaaccggcccaccccgcagaccccgtacggccaa
gttcaagagcccctagtttttgtgcccctccctgacgccggtggccggcgcaagccctac
gtgaagctcaatgtgccctatggcaccatctttgccaacgagacaggtctcccgcaggag
gctcaaacaagaacttccatttcctggaacccgtacagtcagagcaacgcgtacttggtc
tcttgcaatccagtaacacatttggatgagaaaatgttccaggtacgcttaccaggctcc
gccacgaccgccacgctgatcggcctcacccctggggctgactacaacgtgattgtggag
gctctgaagggagcgctcaaacacaaggtccttgagcagcttgttaccgctgagaacacc
gtccaagagggagttcctccgacagacgacgcctgctacgacacgtacaccgcaacctac
cacgatgtcggcactcagtgggaacgcatgtccgagacgggcttcaagctgtggtgcacg
tgtctgggcctcggaaggggacacttcagatgtgactcctctaagtggtgccatgacaat
gggcaaaattaccgcgtcggagacaagtgggaccgccaggccgagaacaatcacttgatg
agctgcacttgcctgggcaatggcaaaggagagttcaagtgtgaaccacatgaatcagtg
tgctacgatgaaggcaaaacattccaagtgggcaaccagtggcagaaagagtacctgggc
gccatctgcacctgcacatgttacggcggacagcagggctggcgatgcgagaactgtcgc
aaaccggcatcggacgccgacgccagtgtggtgcaacctgttcaatacggcaagaacatt
cactgccccattgaatgtctccgacccgaccttctggcagacacgctggcggtccgggat
cctctggagtga
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integrated database retrieval system
