Syngnathus scovelli (Gulf pipefish): 125966882
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Entry
125966882 CDS
T08785
Name
(RefSeq) transmembrane channel-like protein 3 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125966882
03037 Cilium and associated proteins [BR:
sscv03037
]
125966882
Transporters [BR:
sscv02000
]
Other transporters
Pores ion channels [TC:
1
]
125966882
Cilium and associated proteins [BR:
sscv03037
]
Other cilia and associated proteins
Stereociliary proteins
125966882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
125966882
NCBI-ProteinID:
XP_049573352
LinkDB
All DBs
Position
4:1935035..2031641
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTVSESLVGSSRSLSAAKRHKSVRKNSRKIYSAYQDQDQGSSDEDDEVDERVDSDDPEE
MFQNIQYQKEIIANIRTRPWPMRRKLKVLKHAREIVLKYEGRLTRTRGYQTAGADMLKKI
SRVLYNIVVVFIPWEVRIKKIESHFGSGVASYFIFLRWLFGINIVLTIMTGAFIVLPELL
AGAPFGTTRSKTIPKEHLASAQDLDTIWSLGGYLQYSVLFYGYYGRVRKIGSAGYRLPLA
YFLVGMAVFAYSFIILLRKMAKNSRLSLASASDENFTFCWRVFCAWDYLIGNPEAAESKG
AAIVNNIREAIVEEQEKKKDTSLAVLISLRLLANILVLMSLAGSIYIIYFVVDRSQKLEQ
EKPELTLWEKNEVSVVVSLITMIAPSAFELVAQLEMYHPRTSLRFQLARVLVLYLGNLYS
LIIALLDKVNSMSSAILASPANWSDTNSYLATIAEPVASSLSTTLVSEISHRNSTIATIT
TMLDVTNRSRGSSETLSNQTAQFEKNTRSQQDQCWETYVGQEMLKLSIIDMIFTVASILL
IDFIRGLVVRYLSDCCCWDLESKFPEYGEFKIAENVLHLIYNQGMIWMGAFFSPCLPAFN
VLKLIGLMYLRSWAVLTCNVPHQQVFKASRSNNFYLAMLLFMLFLCMLPTIFAIVRYRPS
QHCGPFSGQEKIYDIISETVASDFPLWFSKVMSYITSPVVVLPALLLLFMLIYYLQAIAR
SLKFTNNQLMMQLQTERTDDKKKVFQMAAARLQTPGEEVGDQKTDEQESDITSQDPSIQT
SSPQRNSSITNLHTPGPHSNSIRTITQSASRGELNRPVAGSSRSPAAIPKHKLENVPNRQ
TTFLGGPSGSCRSKSYYHKACNQQPRYSDNIQSDPLYRKTIRAIHPVEPAGIITAQSYGG
RHGPATRYVIVNEHEPRKKLLRSATRIPRHYLMEEEPAEILELYPCNIKRYPPRTPHHQP
PAHRSHLSQQNLNEDEDEKEGKLRRRVLLEKAHRPCSLSDLHQPAHFYIGDRVESHMSVA
KERHVGRGRYRSQEEDEVEEADIRWRGLKSHSWSQDSIRGAEPLLVRTRHHLNSPGRPGQ
SPSRSRQIKSKTKPNLEPTLTESDSASLGSSSDQQNSGTDQYIQVIHNKERYLKSDTRQG
KLSKKRFKQTLDLNSLDSNDLVCSNV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagtttcagaatccttggttggaagtagcagatctttgtctgcagccaagcgg
cacaagagtgtcaggaagaattccagaaagatttattcagcctaccaggatcaagaccag
ggttcatctgacgaagatgacgaagtggatgaacgggtggacagtgatgatccagaggag
atgttccagaacattcagtatcagaaggagatcatcgccaacattcggacaagaccctgg
ccaatgagacgcaagctcaaagtcttgaagcatgccagagagatagttctgaagtatgag
ggacgcctaacaaggaccaggggctatcagacagcaggagctgatatgctgaagaaaatt
tctcgagtcctttacaacattgtggttgtgttcattccttgggaagtgaggattaagaaa
attgaaagtcattttgggtcaggcgtcgcctcctacttcatattccttcgttggttattt
gggatcaacattgtcctcaccattatgacaggagcattcattgtgttaccagagctgctt
gctggagccccgtttggaacaacgaggagtaaaactattcctaaggagcacctggcttct
gctcaagacctggacaccatctggtcccttgggggttacctacagtactccgtgttattt
tatggctattatggaagggtaaggaaaatcggcagcgcaggataccgattgccccttgcc
tacttcttggttgggatggctgtcttcgcatacagtttcatcattctattaagaaaaatg
gccaaaaattccagactcagcctagccagtgcttctgatgaaaacttcacattctgctgg
agggtattttgtgcttgggattacttgattggaaatccagaagctgcagagagcaaagga
gcggctatcgtcaacaacatcagggaagccattgttgaagaacaggaaaagaagaaagat
accagtctggctgttctgatcagtctgcgtttgttagccaatatcctggtgttgatgtct
ctagctggcagcatctatatcatctactttgtggtggaccgttctcagaaattggagcag
gagaaaccagagctgacgctgtgggaaaagaatgaggtgagtgttgtggtttctctcatc
accatgattgctccatcagcctttgaactggtagctcagctagagatgtatcatccaaga
acatcactgcgtttccagctggcaagagtgcttgttttatatttgggcaatctctacagt
cttattattgcactcctcgataaggtcaacagtatgagctctgcaattctagcaagtcca
gcaaactggtctgacaccaactcctacttagcaactatcgcggagcctgttgcatccagc
ctatctactaccctggtgtctgagatctcacatcgcaacagcaccatcgccaccattacc
acaatgctggatgtcaccaacagaagcaggggcagctctgagaccctctccaaccagaca
gctcagtttgaaaagaacactcgctctcaacaggaccagtgctgggaaacctacgttggg
caggaaatgctgaagctgtccatcatagacatgatctttacagtggccagcatcctgctc
attgatttcattagaggcttggtcgttcgttacctcagtgactgttgctgttgggatttg
gagagcaaatttcctgaatatggggaattcaaaatagcagaaaatgtcctgcacttgatt
tataaccaagggatgatctggatgggagcttttttctccccttgtcttcctgccttcaat
gtgttgaagttgattgggctaatgtatctccggagctgggcggtcctcacttgtaatgtt
ccccatcagcaagtcttcaaagcatccagatcaaataatttctacttggcgatgctgctc
tttatgctctttttgtgtatgctgcccacaatatttgccattgtaagataccgaccatca
cagcactgtggaccatttagtggtcaagagaaaatctatgacatcatatctgaaacagtg
gccagcgactttcccctgtggttcagtaaagtgatgagttacatcaccagccctgttgta
gtgttgccagcactacttcttctcttcatgctgatatactatctccaggccattgccaga
tctctgaaattcaccaacaaccagttgatgatgcagctccagacagagcgtactgatgat
aagaagaaagtctttcagatggctgcagcaagacttcagactccaggagaagaagtgggg
gatcaaaagacagatgaacaggagagtgacatcacaagccaggatccctccatccaaact
tcctccccacagcggaacagcagcatcacaaacctccatactcctggtccgcacagtaac
agtatacgtacaattacgcagtctgcatctcggggagaactgaacagacctgtggctgga
tcctccagaagtcctgcagcaatccctaaacataagctggagaacgtacccaataggcag
acaacatttctgggaggcccaagtggttcctgccgctcaaagtcttactaccataaggcg
tgcaatcaacaacccagatattctgacaacatccaatctgaccccctctacaggaagacc
atacgtgctatacatcctgttgaaccagcaggtatcattactgcccagagctatgggggt
cggcacggtcctgccacccgctacgtaattgtcaatgaacatgaacccaggaaaaagctg
cttcgctcggccactcgtatcccacgccattacttaatggaggaggaaccagcagagatc
ctagaactctacccatgcaacatcaagcgctacccacctcgaaccccacaccaccaacca
cccgcccacagatctcatctgtcccaacagaatttgaatgaagatgaggatgagaaagag
ggtaaacttagaagaagggtattgttagagaaagctcatcgaccctgttcactatctgac
ctccatcagccagcacacttctacattggtgacagagtagagagccacatgtctgtagct
aaagagcgccacgtaggtagaggacgctacagatcccaggaagaagatgaggtggaggaa
gcagatatcagatggagaggtttaaaatcacactcctggtcccaggatagtataagagga
gcggaacctctactggtccgaaccaggcaccacttgaactctccaggaagacctggtcag
tccccaagtaggagcaggcaaatcaaatcaaagacaaaaccaaatttggagcccactctg
accgagtctgattccgcttctctgggctcaagcagtgatcagcagaacagtggtacagac
cagtacattcaggtcatccacaacaaggagcgttatctcaagtctgatacaaggcaagga
aaattatccaaaaagaggttcaaacaaaccttggatttaaattctctggattcaaatgat
cttgtttgttccaatgtgtaa
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integrated database retrieval system
