Syngnathus scovelli (Gulf pipefish): 125966883
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Entry
125966883 CDS
T08785
Symbol
efl1
Name
(RefSeq) elongation factor-like GTPase 1 isoform X1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125966883 (efl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125966883 (efl1)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
GTPases
125966883 (efl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFL1
EFG_C
EFG_III
GTP_EFTU_D2
EF-G_D2
EFG_IV
MMR_HSR1
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
125966883
NCBI-ProteinID:
XP_049573357
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Position
4:1701942..1796592
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AA seq
1148 aa
AA seq
DB search
MGPTSLDRIIELQKNPASIRNLCILAHVDHGKTTLADCLVASNGIISSRQAGKLRYLDSR
EDEQIRGITMKSSAISLHFQEGDEDFLLNLIDSPGHVDFSSEVSTAVRLCDGAIVVVDAV
EGVCPQTQVVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYAHLQKIMEQVNAITGTL
FTSRVMEKQAEKTKEEQGCETPLEDQVYDWSAGLEEADDSHLYFSPDQGNVVFASALDGW
GFSIQHFALMYSERMGINPEVLLKTLWGDFYLNAKAKKIMKGAQVKGKKPLFVQLVLDNI
WSLYNAVVTHRDKEKVEKVLASLGVKVMARDSRHSDPKVLLSAICSQWLPVSQAVLSMVC
NKLPSPLHIAAERVEKLMSVGVRRFDTLPERTQELKNAFLQCSSNENAPVIVFVSKMVAV
ETKALPHNKKRPLTQAKISQCRELARQRHAERMAAEQQNHSVNALVDIQSGGLCKGDEIA
TEGLKESKAEEQRETFIAFARVYSGVVKKGQRIFILGPKYDPAQGLSMLPEHCSPSDSLP
EVPHLSCCSIENIYLLMGRELEELEEVPSGNVLGIRGLEDFILKSATISTTPACPPFTPL
NIEASPIVRVAIEPKHPGEMSKLVRGMRLLNQADPCAEVLIQETGEHVLITAGEVHLQRC
LDDLKDRFAKIEISASKPIIPFRETVVRPPKVDMVNEDLGKQQKVAVIHQDGFDLPCYPR
LVIRVVADCLNRRDHIHAEVQVKDEVSHGRATETLHVDSSGLVTLTTPNKLATVSVRAIP
LPQEVTCLLENSSALIRTLEQVNMTLREGRNLDISVKTLEAITDLKAQLESKLQGRKWRD
AVEHIWAFGPRRCGPNILLNKLEGYQRPSFWQYLCQEDKSGKDGAQAKNIREFDNSIVSG
FQLATLSGPMCEEPLMGVCFCIERWDVQSLNWKHENTFEEMATFQEVLGTIKAPESTDAL
EVTSTHPGQAKRYQEITSADCYGHVSGQLIAAMKEACRHAFQAQPQRLMAAMYTCEIMTT
ADVLGKVYGVVGKREGRILHEEMKEGTEIFIIKAVVPVAESFGFADEIRKKTSGRASPQM
VFSHWEVISSDPYWVPTTEEEYLHFGEKADSSNQALKYMNDVRRRKGLYVEEKIVEHAEK
QRTLSKNK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgggccctaccagtctggatagaatcattgaactgcagaaaaatccagccagtattaga
aatctttgcatattggcacatgttgaccacggtaaaactactcttgctgattgcttagtg
gcaagcaatggtatcatatcaagccgccaggcagggaagctaaggtatctggacagcaga
gaggatgagcaaatcagaggaatcaccatgaagtccagtgccatctctcttcatttccaa
gagggtgatgaagatttcttactgaatttgattgactctccggggcacgttgacttctct
tctgaagtttccactgccgtccgcctgtgtgatggtgccattgttgttgttgatgctgtg
gagggagtctgcccacagacgcaggtcgtgctgcgacaggcttggttggagaacatcagg
cccgttctggtcattaataaaatcgaccgacttatcgtggaactcaagtttacccctcaa
gaagcttatgcccacttgcaaaagattatggaacaggtgaatgcgattacgggaaccttg
ttcacatccagagtgatggagaagcaagcagagaaaacaaaagaggagcaagggtgtgag
accccactcgaagatcaagtgtatgactggagtgcagggctggaggaggctgatgactct
catctctatttctctcctgatcaaggaaatgtggtctttgccagtgctcttgatggatgg
ggcttcagcattcagcattttgccctcatgtacagtgagaggatgggcattaatccagag
gtgcttctcaaaaccctatggggtgatttctacctaaatgcaaaagctaagaagatcatg
aaaggagctcaggtcaaaggcaagaagccactctttgtgcagcttgtcctggataatatt
tggagtttatacaatgctgttgttactcacagagacaaggagaaagttgagaaggtgcta
gcatctcttggcgtcaaagtgatggccagggattctcgtcactctgacccaaaagttctt
ctgtctgctatatgcagccagtggttgccagtgtctcaggctgtcctctcaatggtgtgt
aataagcttccaagtccattacacatagcagcagagagggtggaaaaactgatgagtgtc
ggagtgcggcgatttgacaccttgcctgagaggacgcaggaactgaaaaatgcatttctc
caatgctcaagcaatgaaaatgcaccagtcatagtttttgtgtccaagatggttgctgtg
gaaaccaaagccttgcctcacaacaaaaaaagacctttgactcaggcaaagatttcccag
tgcagggaactagcgagacaaagacatgctgaaaggatggcagcagaacagcagaaccac
tcagtgaatgcacttgtggatattcagtcaggaggactctgtaaaggtgatgagatcgca
actgaagggctaaaagagtccaaggcagaggagcaaagagagaccttcatagcatttgcc
agggtatacagcggggtggtgaaaaaaggacaaagaatattcatacttggaccaaagtat
gatcctgcccagggcctaagcatgctgcctgagcattgcagtccttctgacagtttacct
gaggtgcctcatctgtcctgttgttccattgaaaacatctacctgctcatgggcagagaa
ctggaagagctagaagaggtgccctccggcaatgtgcttggcatcagaggtctagaagac
ttcattttgaagtcagctacgatttccaccactcctgcttgcccacccttcactccactg
aacattgaggcgtcacccattgtacgagttgccatagaaccaaaacacccaggtgagatg
tcaaaactggtgcgtgggatgcgtctgttgaaccaagcagacccctgtgctgaagtgcta
atccaggagacaggagaacatgttttgatcactgctggagaggttcatctccaacgctgc
ctggatgacctcaaagaccgattcgctaaaattgagatcagcgcatccaagcctatcatc
ccattccgagagaccgtggtgcgccctcccaaagtagacatggtgaatgaagatcttggc
aagcagcaaaaagtggctgtcattcaccaggacggctttgacctcccgtgttacccaagg
cttgttatccgggtagtagcggactgtcttaacaggagagaccacatccatgcagaagtt
caggtaaaagatgaagtttctcatggtcgtgctacagagactcttcatgttgacagcagt
ggtttggtcacactaaccactccaaataaactggccactgtcagcgttcgtgcaatcccc
ttgcctcaggaggtgacttgtcttctggagaacagctcagcgctaattcgaactctagaa
caagtcaacatgaccttgagggaaggtagaaatctagacattagtgttaagaccttggaa
gccattactgaccttaaggcccaactggaaagcaaactccaaggaagaaagtggagggat
gctgtggagcatatctgggcctttggaccccgcaggtgtggcccaaatattctgctgaac
aagctggagggttatcagcggccatctttctggcagtatctatgccaagaagataaatct
gggaaagatggagctcaggcaaaaaatatccgagagtttgacaacagcattgtcagtggc
ttccagttagcaactctgtcagggccgatgtgtgaagagcccctcatgggggtctgcttc
tgcattgaaagatgggatgtacagtctttaaattggaaacatgaaaatacctttgaagaa
atggccacatttcaagaggttttgggtactattaaagcaccagaaagcactgatgcattg
gaagtcacctctactcacccaggtcaagccaaacgctaccaagagattacctctgcagac
tgttacgggcatgtttcaggccagctgattgctgccatgaaggaggcatgccgccatgct
ttccaggctcagccgcagagacttatggctgcgatgtacacctgtgaaataatgaccact
gcggacgttctgggcaaagtatatggtgttgttggaaaacgagaaggccgcattctccat
gaagaaatgaaggaaggaacagaaatattcatcatcaaggccgttgtgcctgtagctgag
agttttggttttgcagatgaaatccgcaagaagaccagtgggcgagccagtccacaaatg
gtcttcagtcactgggaggtgatcagcagcgatccatactgggttcctaccactgaggaa
gaatacctgcactttggggaaaaggcagactcatctaaccaggcactcaaatatatgaat
gatgtccgccgccgaaagggcctctatgtggaggaaaagatagttgaacatgcagaaaaa
caacgaaccctaagcaaaaacaaatag
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