Syngnathus scovelli (Gulf pipefish): 125966912
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Entry
125966912 CDS
T08785
Symbol
ushbp1
Name
(RefSeq) colorectal mutant cancer protein
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125966912 (ushbp1)
Cilium and associated proteins [BR:
sscv03037
]
Primary cilia and associated proteins
USH complex and associated proteins
125966912 (ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
CENP-F_leu_zip
DUF2690
Motif
Other DBs
NCBI-GeneID:
125966912
NCBI-ProteinID:
XP_049573458
LinkDB
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Position
10:complement(1392893..1397301)
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AA seq
666 aa
AA seq
DB search
MEQFRLVRCNSLDTASGSGKEPRMPLDHRGLYPELEPSPAELAQCEAEVGTLLSIIAEVN
KKMGSLKAPGEPDDLRPPRPSSPLFPDLLSHRLVRSIPENITTSDVKCRPSLPYRGGSSV
MWAELKGALTAVEDSINYRRSWAAPITSSELEKPKEHLRAAQDSWAKATKILEEMEKEFG
IACPSDVGRETFQEVVMEKQAPMVELQRAHSINQVEEEEKSKVGQQRAWRSAICSPPYKS
SGSADRMSSSFPGSPLLLRRAAGGSLSSGGDSSPRSFVTSGSPCSSPNGLETEIEHLNRY
IEKLKTKNERLTVALERRRSECEQIGITLKRLEAECSTAHLALRYCEECEEAYGQLLSLY
DAQRQQCLTNGAGVNNDQQTSSSPSLQKRKMSSDSEELSTAFTDVTKEMERHKMQRTPEA
IDREVALRQLIERLKRERAAICLPKPRPHREKISPESAMRVGHLSKDNKPVESKRDKTSL
FHEMITAREEMSDLRALIRLKEKELRCLEWSVVAQKAQEASGARIPQGLREKPEDCKTEQ
QRLCENADKVCSDADVSGLRSRPILKELQVLLQREQALKKRLAFVHDSLNASLPESASNS
DEHVARIAQAHSKALSSYRHIRRRYREQVWKLEQKLAAMMESQHTHNQTSKAAGEDSEWR
REETVL
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtttcgcttggtccggtgtaacagcttggatacggcgtctggcagcggcaag
gagccgaggatgcctttggaccacaggggcctttaccctgagctggagccttcaccggca
gaactggctcaatgtgaagctgaagtgggcacgctgctcagcatcatcgctgaagtcaac
aaaaagatgggctcgctcaaggcacccggtgaaccagatgatctgagaccaccaagacca
tccagtcctctttttcctgacctgctttcacacagactagtgagaagcattcccgagaat
atcaccacgtctgatgtcaaatgtagaccttcactgccttatcgagggggcagtagtgtg
atgtgggcagaactgaaaggtgctctgactgctgtggaggactcaatcaactacagacgg
tcctgggcggcccccatcacatcctccgagctagaaaaacccaaagagcatctaagagca
gctcaggatagctgggccaaggccacaaagattttggaagagatggaaaaggaatttggg
attgcttgcccatcggatgtgggtagggaaacattccaggaggtagtcatggaaaagcag
gctccaatggtggaactgcagagagcacacagcatcaaccaggtggaggaggaggagaag
agcaaggttggtcagcagagggcctggaggtcagccatttgctctcctccctacaaatct
tcaggcagcgcagaccggatgtcctcctcctttccaggttctcctttactcctcaggaga
gctgcaggaggctcgttatcttcaggaggtgacagctccccgcggagctttgtcacctca
ggtagtccttgttcaagccccaacggcctggagactgagatagaacacttgaataggtac
attgagaagctgaagaccaagaatgagcgtctgactgttgctttggagcgaaggaggtca
gagtgtgagcagatcggtattacattaaagaggctggaggccgagtgctcgaccgcgcac
ttggctctccgatactgcgaggagtgcgaagaggcttacggccaacttttgtcgctttac
gacgctcagaggcagcaatgcttgaccaacggagcaggggtcaataacgaccagcagact
agcagcagtccgtcgcttcagaagaggaaaatgtcaagtgacagtgaggagctgtccacc
gccttcactgatgtcaccaaggagatggaaagacacaaaatgcagagaacgcccgaagcg
atcgatcgagaagttgcgctccgtcagctgattgagcggctaaaaagagagcgggcggcc
atttgcctcccgaagccacggccgcatcgagaaaaaatcagcccagagtctgccatgaga
gtgggacatttatccaaagataacaagccagtggaaagcaagcgagataaaacatctctg
ttccatgagatgatcacagccagggaggagatgtcggatctccgtgctctgatccgtctg
aaggagaaagagctgaggtgtctggagtggagcgtggtggcccaaaaagcacaagaagca
tctggagcacgtattccccaaggcctcagagaaaagccggaggactgtaagactgaacaa
cagagactctgcgagaatgcagataaagtgtgtagtgatgctgatgtgtctgggctcagg
tccaggcccatattgaaggaactgcaggtgctacttcagagggaacaagccctgaagaag
agattggcctttgttcatgactcattgaatgcatcgcttcccgaaagcgcctccaacagc
gatgagcacgtggcacggattgcacaagctcacagtaaggccttgagctcgtacagacac
attcgcagaagatacagggagcaagtttggaagctggagcagaaactagcagccatgatg
gaaagtcagcacacgcacaaccaaacgtccaaggcagcgggagaagattcagaatggagg
agggaagaaactgttctgtga
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