Syngnathus scovelli (Gulf pipefish): 125966963
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Entry
125966963 CDS
T08785
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125966963 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125966963 (vps35)
Membrane trafficking [BR:
sscv04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
125966963 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
125966963
NCBI-ProteinID:
XP_049573540
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All DBs
Position
4:complement(23889089..23895806)
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AA seq
825 aa
AA seq
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MKLMRASRQSHDTLATLLDRSDTPLGIMPTTQQSPQDEQEKLLDEAVHAVKVQSFQMKRC
LDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVAD
LYELVQYAGNIIPRLYLLITVGVVYVRSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYL
LQCTRNILPDDGEHSEGSEEMTGDINDSVDFVLLNFAEMNKLWVRMQHQGHSRDREKREK
ERQELRILVGTNLVRLSQLEGVNVDKYKQVVLPGVLEQVVNCRDSLAQEYLMECIIQVFP
DEFHLQTLNPFLRSCADLHQHVNVKNIIIALIDRLALFAHREDGPGIPAEIKLFDIFSQQ
VATVIQSRQDMPSEDVVSLQVSLINLAIKCYPDRVDYVDKVLESTVEIFNKLNLEHIATS
SAVSKELTRLLKIPVDTYNDVLTVLRLKHFPPLFEYFDYESRKSMSCYVLGNTLDYNTAV
LAQEQVDAILNLVSTLIQDQPDQPADDPDPEDFAEEQSLVGRFIHLLRSDDPDQQYLILN
TARKHFGAGGNQRIRYTLPPLVFAAYQLAFRYKDNASLDDKWEKKCQKIFSFAHQTISAL
IKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLI
IGTFERTKCFSEENHEPLRTQCALAASKLLKKPDQCRAVSICAHLFWSGRSTDKNHEEIR
DGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYVCFYERENDAVTVQVLNQLIQKIR
EDLPNLEASEESEQINKHFHNTLEHLRLQREAPEAEGPVYEGLVL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcatgagggcatcgcggcagtcacatgacactttggcgacgctgttggaccgt
tctgacactccgcttggaatcatgccgactacacagcagtctcctcaggatgagcaggag
aagcttctggacgaagccgtgcacgctgtcaaggtccagtccttccagatgaaacgatgc
ctggacaagaacaagctgatggatgcactcaaacacgcctccaacatgctgggagaactg
cgcacctccatgctgtctcccaaaagctactacgagctttacatggccatctcggacgag
ctgcactacttagaggtctacctgacggacgagttcgccaaaggacgcaaggtggccgac
ctgtacgagctggtccagtacgcgggcaacatcattcccaggctctacctgctgatcacg
gtgggcgtggtctacgtgcgctccttcccgcagtctcgtaaagacatcctcaaggacctg
gtggagatgtgccgcggcgtgcagcacccgctcaggggcctcttcctcaggaactacttg
ctgcagtgcacccgcaacatcttgcctgacgacggcgagcacagcgaaggctcggaggag
atgacgggcgacatcaacgactcggtggattttgtgctgctcaactttgccgagatgaac
aagctgtgggtgcgcatgcagcaccagggccacagtcgcgaccgagagaagcgcgagaag
gagcgccaggagctgcgcatcctggtgggcaccaacctggtccgcctcagccagctggag
ggcgtcaacgtggacaagtacaagcaggttgttcttcccggcgtgctggagcaggtggtg
aactgccgagactcgctggcgcaggagtacttgatggagtgcatcatccaggtgttcccg
gacgagttccacctgcagaccctcaaccctttcctccgctcctgcgccgaccttcatcag
cacgtcaacgtcaagaacatcatcattgccctcattgacagactggcgctgtttgctcac
cgagaagacggacccgggattccggccgagatcaaactctttgacatcttctcccagcaa
gtggccacagtcatacagtcgcgtcaggacatgccctccgaggacgtggtgtccctgcag
gtgtcgctcatcaatctggccatcaagtgctaccccgaccgcgtggactatgtggacaaa
gtgttggagagcaccgtggagatcttcaacaagctcaacctggaacacatcgccacgagc
agcgccgtgtccaaggagctgacgcgcctgctgaagatcccggtggacacgtacaacgac
gtcttgacggtgctgcggctcaaacacttcccgccgctctttgagtactttgactacgag
tctcgcaagagcatgagctgctacgtgctcggcaacacgctggactacaacacagccgtc
ctggcgcaagagcaggtggacgccatcttgaacctggtgtccacgctgatccaggaccag
cccgatcagcccgccgacgacccggatcccgaggattttgccgaggagcagagcctcgtg
ggccgcttcattcatctgctgcgctcggacgaccctgaccagcagtacctgatcctgaac
acagcccgtaaacactttggtgcgggcggaaaccaaaggatccgatacacgctgcctccg
ctggtctttgccgcctaccagctggccttcagatacaaggacaacgcgtcgctggacgac
aagtgggagaagaagtgtcagaagatcttctcgttcgcccaccagaccatcagcgccttg
atcaaggccgagttggccgagctgccgctgcgactcttcctgcagggggcgctggcggcc
ggcgagatcggctttgagaaccacgagacggtcgcctacgagttcatgtcgcaggccttc
tcgctgtacgaggacgagatcagcgactccaaagcgcagctggcggccattacgctcatc
atcggcacgttcgagcgcaccaagtgcttcagcgaggagaaccacgagccgctcaggacg
cagtgcgccttggctgcctccaagctgctcaaaaaacccgaccagtgtcgcgccgtcagc
atctgcgcgcacctcttctggtcaggacgcagcaccgacaagaaccacgaagagatccga
gacggcaagcgcgtgatggagtgcctgaagaaagcgctgaagattgccaaccagtgcatg
gacccctcgctgcaagtgcagctcttcatcgagatcctcaacagatacgtctgcttctac
gagagagaaaacgatgccgtgaccgtgcaggttctgaaccagctgatccagaagatcagg
gaggacctccccaacctggaggccagcgaggagagcgagcagatcaacaaacacttccac
aacacgctggagcacctgcgcctgcagagggaggcgcccgaggccgaggggcccgtctac
gagggactggtcctctga
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