Syngnathus scovelli (Gulf pipefish): 125966968
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Entry
125966968 CDS
T08785
Name
(RefSeq) E3 SUMO-protein ligase ZBED1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125966968
04121 Ubiquitin system [BR:
sscv04121
]
125966968
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
125966968
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
125966968
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
DBD_Tnp_Hermes
hAT-like_RNase-H
zf-C2H2_12
CDI_toxin_EC869_like
Motif
Other DBs
NCBI-GeneID:
125966968
NCBI-ProteinID:
XP_049573550
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All DBs
Position
4:complement(23833292..23836473)
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AA seq
660 aa
AA seq
DB search
MESIRLLFAVDRPKHPSPLSCTKSAPLSVLLIACVTMCAKRVKEEEVCGVKEEEFEEEVC
GVKEEEYEEDVCGVTEEKETQLLDARVALHGADRKRGRSSDMWEYFSLITPDKVQCLVCS
AELKYHGNTSSMVRHYTARHGPALKQGTATGRKQELDEALANMVVKDWQPFSVVDDCGFK
ALVASLDPAYVLPSRRALKKMVLEKYEEERSKAKAAVRQAEAVSLTADTWSSVGADACLA
VTCHFLDQAMRVATVLLGVRPLPQSHTSSHVADSLTALMEEWAIEGKVTSIVTDAAPHMV
ASVRHLNLRHALCFARSLNLVVKKALDATAGLQELRGRARHLVALFKSSAGAREKLRQAQ
AQTDAPAAPLVQEADARWTSTFLMLQRLSEQRRCVGAALAGLETPPPPPPLSSQDHETAA
ACLHLLAPFYQASLEMAQEKRLSASKVIPITKMLLLHLHEANEKTSHATAKQLAHNLLSV
MQERFDTLESQTALSLSTLLDPRFKTFGFYNQARAQTSVKRLAAQCSQVIMRTPAEERPF
ASAPSSPANVAGIDLWESLDRDASEAMRRSRNASVDATLEVQRYVSDPPLGRAEDPLAYW
LSHRNVYPHLFRLAKHFLCTPASSLPCEQVFSKCGELVSKKRNRLSPKSVEIVTLLNQSL
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcattcgtctcctgttcgcggtagacaggccgaagcatccttcaccactatcc
tgcacgaaaagcgcaccgctcagtgtgctgcttatcgcgtgcgtcacaatgtgtgcaaag
cgtgtgaaagaggaggaagtttgcggagttaaagaggaagagttcgaggaggaagtttgc
ggagttaaagaggaagagtacgaggaggacgtttgtggcgttacagaggagaaggagacg
caactcctggacgcccgagttgcgctccacggagcagacaggaagagaggtcgttcttcg
gacatgtgggaatacttcagtctgatcacccccgataaggtccagtgcttggtgtgctcg
gccgaactcaagtaccacggcaacacgtcgtccatggtgaggcactacacggccaggcac
ggacccgctctgaaacagggcaccgcaacgggccgcaagcaggagctggacgaagcgctg
gccaacatggtggtgaaagactggcaacctttttccgtggtggacgactgcggcttcaag
gcgctcgtggcttcgctggatcccgcctacgtgctcccgtccagacgggccctcaagaag
atggtgctggagaaatacgaggaggagcggagcaaggccaaggcggccgtgcgccaggcc
gaagccgtcagcctgaccgccgacacgtggagctcggtgggggcggacgcctgcctggcg
gtgacctgccactttctggaccaggccatgagagtggccacggtgcttctgggcgtgcgg
cctctgccgcaatcgcacacgtccagtcacgtggccgacagcttgacggcgctcatggag
gagtgggccatcgagggcaaggtgacttccatcgtgaccgacgcggcgccccatatggtg
gcctcggtgcgccatctcaatttgagacacgcgctctgctttgcccgctcgctcaatttg
gtggtcaagaaggctctggacgccacggcgggcctgcaagagctccgcggcagggcgcgc
cacctggtggctctcttcaagagcagcgccggcgccagagagaagctgagacaagcgcag
gcgcagacggacgctccggccgcgccgctcgtccaggaggcggacgcgcgctggaccagc
accttcctcatgctccagcgcctctcggagcagcgacggtgcgtgggcgcggcgctcgcc
gggctggaaacgccgccgccgccgccaccgctgtcctctcaggaccacgaaacggcggcc
gcgtgcctgcacctgctggcgcccttctaccaggccagcctggagatggcgcaggagaag
agactgtcggcctccaaggtgatccccatcaccaaaatgctgctgctgcacttgcacgag
gccaacgaaaagaccagccacgccacggccaagcagctggcgcacaacctgctctcggtc
atgcaggaaaggttcgacacgctggaaagccagacggccttgagcctctccaccctgctg
gatcccagattcaaaacctttggcttctacaatcaagcgcgcgcgcagacctcggtcaaa
cgcctggccgcccagtgctcgcaggtcatcatgcgcacgcccgccgaagagcggcccttt
gcgtcggcgccctcgtcgccggccaacgtcgcgggtatcgacctctgggagagcctggac
agagacgcctcggaagccatgcggcggtcgcgcaatgcctcggtggacgccacgctggaa
gtgcagcgctacgtgagcgacccgcccctggggcgagcggaagacccgctggcctactgg
ctgagccatcgcaacgtttacccgcatctcttccggctggccaagcatttcctgtgcacg
ccggcgtcgtcgcttccttgcgagcaggtcttctccaaatgtggagaacttgtgagcaag
aagagaaaccgactcagccccaaaagtgtggaaatcgtgacgttgctcaatcaaagtctc
tga
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