Syngnathus scovelli (Gulf pipefish): 125967028
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Entry
125967028 CDS
T08785
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125967028 (ctr9)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
125967028 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_7
TPR_6
TPR_11
ARM_TT21_5th
TPR_9
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
NatA_aux_su
DUF4810
Motif
Other DBs
NCBI-GeneID:
125967028
NCBI-ProteinID:
XP_049573649
LinkDB
All DBs
Position
4:complement(13586605..13594325)
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AA seq
1171 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYSDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNPKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETIKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLEEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVL
LYLARALFKCGKLQECKQMLLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SSVKELELAHRYFSYLSKAGDKMRFDLAHAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQEQERDLLRQQLMKEQEEKKSREAEEQKKLLEQRALYVEKTKNLLNFTEGVSKEKK
KSGGGGGGRRKKGGDMDEFVNDDSDEDLPIKKKKKKKAASGSEQDEGEDGEKKARRKRKK
GREDSDEEGGAQSKKQRKTKERKRIEKFQLERPPPSLKGKIKSKAIISSSESSDEDGLKI
AEDRNQRDSGSGSDDDDDNDHRKRIVSESDSDAGRNRSGSEAGSPQGRNHSGSEAGSPQR
SVGSPQRSAGSDDDDSGSDRPVKKRRAQQQSDSDQSDNESKRSGSDDESRPGSPVAASER
ESEPGSDNEGSPRRSDNASEPEGSNNDDDSD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgagggtctatcgagatccctctgcgggacaccgatgaggtcatcgagcttgat
tttgatcagctgcctgaaggtgatgaagtcatcagtatcctgaagcaggagcacacacag
ctccacatatggattgccttggcgctggagtactacaagcagggcaaaacagaggacttt
gtcaaactcctggaggcggcacgtatcgatgggaacctggattacagcgaccacgagaag
gatcagatgacatgtctagacactctggctgcttactacgtgcagcaggcacgcaaggaa
aagaacaaagatgccaaaaaagagctcatcacacaggccacactcttgtacacaatggca
gacaagatcattatgtatgatcagaaccatttgctgggtagagcctgtttttgcctactg
gaaggagacaagatggaccaggctgacgctcagttccaatttgtcctcaaccagtccacc
aataacatccctgcgttacttggaaaggcttgcatctccttcaataaaaaagattacaga
ggagcactggcgtactacaaaaaggctctgcgcacaaaccccggctgtccagctgaggta
aggctgggcatgggccactgcttcgtcaagctcaacaaactggagaaagctcgcttggcg
ttcggtcgggccctggagctcaaccccaaatgcgtgggagccctcgtgggcctggctgtg
ctggagctcaacaacaaggaggccgactccatcaagaacggagtgcagctcctgtctcgc
gcctacaccatcgaccccagcaacccaatggtgctcaaccacctcgccaaccacttcttc
ttcaaaaaggactacagcaaagttcagcacctggcattgcatgctttccacaacacggaa
gtggaggccatgcaggcggagagctgctaccagttggctcgatcttttcacgtccaggag
gattatgaccaagcctttcagtattactaccaggccacccagtttgcttcatccaccttc
gtgttgcccttcttcggcctgggacagatgtatgtttatcgaagagacaaagagaatgca
gcccagtgcttcgaaaaggttttaaaggcctaccccaacaactatgagaccatcaaaatt
ctgggctccctgtatgcaacgtctgacgaccaggaaaaacgagacattgccaaaggtcac
ctgaagaaggtaaccgagcagtaccccgacgacgtggaagcctggatcgagctggctcag
atcctggagcagaccgacatccaaggcgcgctgtctgcgtacggcacagccacccgcatc
ctgcaggagaaagtgcaggcagacgtgccgccggagatcctcaacaacctgggagcactt
catttccggctgggtaacctggaagaagccaagaaatacttccttgcctctttggagcgg
gccaaagccgagggagagcacgacgagcactactataacgccatttccgtcaccacctcc
tacaatctagcgcgtctgtacgaggccatgtgtgaattccacgaggcggagaagctctac
aaaaacattctgagagagcatcccaactatgtggactgctatttgcgactcggcgcgatg
gcacgcgacaaaggcaatttctacgaggcttctgattggttcaaagaggcccttcagatt
aatcaggatcacccggatgcctggtcactcatagggaacctccacttggccaaacaggaa
tgggggcccggtcaaaagaagtttgagcgtattctgaagcagccgtccacgcagaatgac
acctactccatgttggctctgggcaatgtgtggctgcagaccctccaccagcccacaaga
gaccgtgagaaggaaaagagacaccaggatcgcgccttggctatttacaaacaggtcctg
cgaaacgatgccaagaacctctatgcggccaacggaattggtgccgtcctagcccataag
ggctacttcagagaggcccgggatgtgtttgcacaagtgagggaggctacggccgacatc
agcgacgtgtggttgaatctggctcacatctacgtggagcagaagcagtacatcagcgct
gtgcagatgtatgagaactgcctcaagaagttttacaaacaccagaacacggaggtgttg
ctctacttggcgcgagcactctttaaatgtggcaaactccaggagtgcaagcagatgctg
ctaaaggcccgccacgtggcacccaatgatacggtcctcatgttcaacgtggccctggtg
cttcagcgcctcgccactctggtgctcaaggatgagaagagtaacctgaaggctgtgctg
agctctgtcaaagagctggaactcgctcacaggtatttcagttacctcagcaaagctgga
gacaagatgagatttgaccttgcgcatgcagcttctgaagccaggcagtgctccgatctg
ctgagtcaggctcagtaccacgtggcacgcgccagaaaacaggacgaggaggagaaggaa
ctccgggccaagcaagaacaagagcgcgacctgttacgccagcagttgatgaaggagcag
gaggagaagaagagccgggaagctgaggagcagaagaagctgctggaacagagagctctg
tatgtggagaagaccaagaacttgctcaacttcaccgagggcgtttccaaggagaagaaa
aagagcggtggtggaggtggcggacgtcgcaagaagggaggtgacatggacgagtttgtc
aatgacgactccgacgaagatctgcccataaagaaaaagaagaagaagaaggcagccagc
gggagcgagcaggacgagggtgaagacggagaaaagaaggcccgccggaagagaaagaaa
gggagagaagacagtgatgaagaaggaggagcgcaatccaagaagcagcgcaaaaccaaa
gagcgcaagaggatcgaaaagtttcagcttgagcgtcccccgccttctctcaaaggcaag
atcaagtcaaaggcaattatctcatcttctgagtcttcagacgaggatggcctgaaaata
gcagaggacaggaaccaaagagacagcggttccggatccgacgatgatgacgacaacgac
cacaggaagcgcatcgtatcggaaagcgactccgacgccgggaggaaccgctccggcagc
gaggcgggcagccctcagggaaggaaccactcgggcagtgaagcgggcagccctcagcga
tccgtgggcagcccccagcgctcggcaggctccgacgacgatgactctggcagcgaccgt
ccggtgaagaagaggagggcgcagcagcagtccgactcggaccagtccgacaacgaaagc
aagaggtcgggatcggacgacgagtcccgacccggttcacctgtcgcggcatcagagcga
gaatcagaaccggggtctgacaacgaagggtcccctcgccgctctgacaatgcatcagaa
cccgagggctccaacaatgacgatgacagtgattag
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integrated database retrieval system
