Syngnathus scovelli (Gulf pipefish): 125967074
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Entry
125967074 CDS
T08785
Symbol
cdhr5a
Name
(RefSeq) cadherin-related family member 5
KO
K16505
cadherin-related family member 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125967074 (cdhr5a)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Cadherin related
125967074 (cdhr5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
125967074
NCBI-ProteinID:
XP_049573747
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All DBs
Position
4:7606032..7614370
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AA seq
700 aa
AA seq
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MDQKWKRQPVTVIITLCFCTFGSAQRLCTVPAGPVSVPENSTADLQVVKISSGSDVTLNV
VVNPEEKFYLKGKALMVKKELDYEALPSRAALVVWVQCSRPGSKSVNESVEVLVENINDN
PPNFAQNNYVLEVNELTPVNSSVGLIEATDADSEPLFYRLESTMDKYFRLDNINTPKLLV
KSVIDYDVVQKVSLILHVQDTFNGSASNEPFFTSVATITVHIKDVDNRPPWFQPCLRTNL
GLAKLCVSTGYRGKVNLTEKEEGPLTLEPGPVFAKDGDKNRSEQISYRILRGNDGNLFQI
DEDTGNISMTKAADIVGPITLTVMASQVTNRDQFAVTQVTFDVTKKSRNPPHFEKERYEG
FIYSNSIPESMILRDRSSNRPFRVRARDEDFAGGVNPDVKYEVQYSSYVNVTSDGFVILK
RVVKTESFVLQLRAVDTTTGEFGTAALSVQVIPADAMPSPSNVGYRAGDMALLGLVMAAL
LVLSLIVIGFLISRLWKGHSSGDKICECLDCLKSEQPNRGRRDSLQYTNDGFQNEADGSR
GRWRKALPRRSTFPGGQVMPLGRRNRHCSSCGVFTNHAPKGSPSVRPSRRGRGDGDDYSS
RAMLAKQRRKEGQKTVWFKEIEDSSDIEVEIIPDTVGRVEEETQEELEGELVMEGVVKDP
AASCKKSNDGQENHSTEPRAEQDNGSAASEQEKETNERDG
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaaatggaaacgccaacctgtgactgtcatcatcaccctttgtttttgtact
tttggttccgctcaaagactttgtacagtgcctgctgggcctgtgtctgtcccggagaac
agcaccgctgacctccaagtggtaaaaataagctctggtagtgacgtaacactgaatgtt
gtggtgaaccctgaggaaaagttttacctgaaaggcaaagccctgatggtgaagaaagaa
ctggattatgaggctttgcccagcagagcagctttggtggtgtgggtacaatgcagcaga
ccaggctccaaatctgtcaatgagtctgttgaagtactggtggaaaatataaatgataac
cccccaaactttgctcagaataactacgtactggaagtaaatgagctaacacctgtcaat
tccagtgttggactgatagaagccactgatgctgattctgaaccactattttatcgctta
gagtctaccatggacaaatactttcggctggacaacatcaacactccaaaattacttgtg
aaaagtgttatagactacgatgttgttcagaaagtctcattgattttacacgtacaggac
acatttaatgggtcagcctccaatgagcccttcttcacatccgtggccaccatcacagtg
catataaaggatgtagacaaccggccgccctggtttcagccttgcttaaggactaattta
gggcttgccaaattgtgtgtgagcactggttatagaggcaaagtcaatctgactgagaag
gaggaaggcccgctgacgctggaacccggcccagtttttgcaaaagatggagacaagaac
aggagtgaacagatcagctaccggattttaagagggaatgatggaaatctattccagata
gatgaagatacaggaaatatcagcatgacgaaagctgccgatattgtgggcccgataact
ctcacagttatggcatcacaagtgaccaacagggatcagtttgctgtgacacaggtgacc
tttgatgtgaccaagaagagcagaaaccctccacactttgaaaaggagcgttacgagggc
tttatttacagcaattctatacctgaaagcatgattctcagagaccgcagtagcaacaga
ccctttagggtccgagctcgagatgaagactttgccggtggtgtgaatccggatgtaaaa
tatgaggtgcagtacagcagttacgtcaacgtgacctcagatggttttgtgattctgaag
agagttgtcaaaacagaatcgtttgttttacagcttagagcagtggacacaacaacagga
gaatttggtacagccgccctctctgttcaagttatacctgctgatgccatgccgtcccct
tcaaatgttggctatcgtgcgggtgacatggcactcctcgggctggttatggcggctttg
ctggtcctctcccttattgttattggcttcttgatttcccgtctatggaaggggcactcc
agcggtgataaaatatgtgagtgcttggactgtctgaagtctgagcagccaaacaggggc
cgcagagactccctgcagtacaccaatgatggctttcagaatgaggctgacggaagccgt
ggccgctggaggaaggcccttcccaggcggagcaccttccccgggggccaagtcatgcca
ttggggagacgcaaccgccactgttcctcctgcggtgtctttactaaccacgcccccaaa
gggagtccctcagtaagaccctccaggagagggagaggagatggagatgattacagctca
agggccatgctggccaagcagaggaggaaggaggggcagaaaactgtatggttcaaggag
atcgaggactcctcagacattgaggtggagattatcccggacacggtgggccgggtggag
gaggagacgcaggaggagctggaaggggagttggtgatggagggagtagtcaaagaccct
gctgcctcatgcaaaaaatctaatgatgggcaggaaaaccacagcacggagcctagagca
gagcaggacaatggtagcgccgcatcggaacaggagaaggaaacaaacgagcgggatggc
tga
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