Syngnathus scovelli (Gulf pipefish): 125967391
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Entry
125967391 CDS
T08785
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125967391 (ddx21)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125967391 (ddx21)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125967391 (ddx21)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125967391 (ddx21)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125967391 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Sortilin-Vps10
Motif
Other DBs
NCBI-GeneID:
125967391
NCBI-ProteinID:
XP_049574400
LinkDB
All DBs
Position
4:complement(16407306..16414027)
Genome browser
AA seq
745 aa
AA seq
DB search
MPSKSVVEVKTMEEESDTAADLEALKIKSKEAKKLKKKKKLEEQEEPDSECLVPKKKKRK
NKLAEDEVNGHIDEATDLTGITDITEPPKKKKKKKSEEEVKLKKTIGVVEAEINQHSLPD
TPAPTPSQTPSQSDGSESEKEIEETPEQKAGAFSNFRISHGTIQKLKARGVSYLFDIQVQ
TFDHVYDGHDVLAQARTGTGKTLSFAIPLVEKLQSDGLTQPRGRPPKVLVLAPTRELAIQ
VARDFKNIAKKLSISCFYGGVPYPPQFEAIRNGIDVLVGTPGRIKDLFEKKSLNLKKLKH
VVLDEVDQMLDMGFAEPVEEILSSSYNKQDDDPNPQTLLFSATCPSWVYDVAKKYMRPDC
KRVDLIGKKTQRAATTVQHLAMECHWSQRAAVIGDVIQVYSGSSGRTIIFCETKRQVNEL
FTSTSIKQNTQCLHGDIPQQQREVTLQGFRKGTFDVLVATNVAARGLDIPEVDLVIQCSP
PKDVDSYIHRSGRTGRAGRMGICICFYVRREEYQLRTVEQSAGIKFKRVSAPSTNDLIKS
SSKDVSTFLDSVSTAAIEHFRVSAERLIKEKGAVEVLAAALAHMSGLTSLTNRSLLASKP
GHTTMQLLCSQKMYNLGLAWNTLKEQLGEDVEKHIHSMVFIVGHMGVCFDIPDDKVKEFQ
EGWEDDSCWQLTVATELPQVDRDSQSDGGRSQGGRGRSFGGGRGGNWKGRFQGGRRQSFG
GSGGRGGSGRSGGRTGSKRYFNQSF
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctaaaagcgtcgttgaagtcaaaaccatggaagaagagagtgacaccgccgcg
gatcttgaggcgttaaagatcaaatccaaggaagccaagaaactgaagaagaagaagaag
cttgaggaacaagaggagccggacagtgaatgtcttgtaccaaaaaagaaaaaaagaaaa
aacaagctagcagaggacgaagtcaatggtcacatagatgaagcaaccgacctgaccggc
attactgatattactgagccaccaaagaagaagaagaaaaaaaagagcgaggaagaggtg
aaattgaagaaaacgataggagttgttgaagctgaaatcaatcaacattccctgccagac
acacctgctccaaccccaagccagacaccatctcaatccgatgggtcagagagtgaaaag
gaaatagaggaaacacctgagcagaaagccggagccttctccaacttcagaatctctcat
ggcactatacaaaaactcaaagctcgaggagtctcctacttgtttgacattcaggtccag
acatttgatcacgtatatgatggacatgatgtacttgcccaagcgcgcacaggaacaggg
aagactctctcctttgctatcccactggtggaaaaactccagtcggatggattgacacaa
ccaagaggacgcccccccaaggtgttggttttggctcccaccagagagttggccatccag
gtcgctagggactttaaaaatattgccaagaaattgagcatctcctgtttctatggaggc
gtcccatacccgccccaatttgaggccatccgtaacgggattgatgttttggtgggaacc
cctggtcgtattaaagatctctttgagaaaaagagccttaatctcaaaaaactgaaacat
gtggttcttgatgaagtggaccaaatgctggacatgggatttgctgagccagtggaagaa
attctatcctcttcctataataagcaagatgacgaccccaatccccagacgctcctgttt
tcagccacctgcccctcatgggtctacgatgtggccaagaaatacatgaggcccgattgc
aagcgtgttgacctgattggaaagaaaacgcagagagccgcaacaactgtgcagcatctg
gccatggaatgccactggtcacagcgtgcagcagtgataggagatgtgatccaggtgtac
agcggcagcagtggccggaccatcattttctgtgagaccaagagacaggtcaatgagctt
ttcacgagtacatccatcaaacagaacacccagtgcctccatggcgacattccccaacaa
cagcgggaagttacactgcaaggcttcaggaagggaacctttgatgttttggtggctacc
aacgtggcagcccgcgggttagacatccctgaagttgacctcgtcatacagtgttctccg
cccaaggatgtggactcgtatatccatcgctcaggaagaacgggcagagctggaagaatg
ggaatatgcatttgtttctacgtgaggcgtgaggagtatcagctacgcaccgtggaacaa
tcggctggcattaagtttaaacgagtctctgctccctctaccaatgacctcatcaagtca
tcaagcaaggatgtttcaacgttcctggactctgtctccacggcagccattgaacatttc
agagtttctgctgagaggctgataaaggagaaaggagcagtggaagtgctggctgcggcc
ttggcacacatgtccgggttgacgagtttgacgaataggtcactgcttgcctccaaacct
ggtcataccaccatgcagttgctatgctctcagaaaatgtataatcttggacttgcctgg
aatacgctcaaggaacaactgggagaggatgttgaaaagcacatccattcaatggtcttc
attgtaggccacatgggcgtttgtttcgatattccagatgacaaagtgaaggagtttcag
gagggctgggaagatgatagctgttggcagctgaccgtggccacagagctcccccaggtg
gacagggacagccaaagtgatggtggaagatcccaaggcggacgtggccggagttttggg
ggaggtagaggaggcaattggaaaggaaggttccaagggggacgtcgccagagttttggg
ggaagtggcggtcgcggtgggtcaggtagaagtggcggccggacgggatctaaacgttac
ttcaaccaatcattttga
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