Syngnathus scovelli (Gulf pipefish): 125967431
Help
Entry
125967431 CDS
T08785
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125967431 (katnb1)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
125967431 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_RIG_2nd
WDR54
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
PROPPIN
Beta-prop_VPS8
PEP5_VPS11_N
Beta-prop_LRRK2
RMC1_N
VPS8_N
eIF2A
Beta-prop_NWD2_C
Beta-prop_IFT122_2nd
Ge1_WD40
Cytochrom_D1
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
125967431
NCBI-ProteinID:
XP_049574486
LinkDB
All DBs
Position
4:24091396..24097300
Genome browser
AA seq
678 aa
AA seq
DB search
MAAAAAKISWRLQEFEAHGSRVCCASLGKRTGRLLASAGEDCKVNIWSVSKANCIMSLCG
HRKVVECVHFNASEEQLATGSQSGSILVWDLEAAKMLRTLPGHKSSITSFAFHPFGDFLV
SGSTDTNIKMWDVRRKGPIYRYKGHTAAVRSLAFSPDGKWLASASDDCTVKLWDLKQAKT
ITEFTAHTAAVGTIQFHPNEYLLASGGADRWVRLWDLEKFCQVGALQDTGAVRCVMFSAN
GGCLFSGHADALGVCTWEPERWLDTVTVGWGRVADLALCNQQLMAVSHQLSSVSTYVVDL
KRVKTSAAPNVAAENDMAPAAPAGVQPTGAKVGGPRRSYQRPASPSQGLKRSAEAERRSP
EGERRSPSEDEADDKASSAQIHNAQDYREIFQPRNAICRTPPGMSEPFPAPPEDEGADGN
VAAAAAALLCPDQQPPVSTSAAPSTPVQRVEPTVVACVKRAAPSASEQVQPPPDEIFPAG
RSEPSGLDVADFLSARRGGGILSESDVLNHIQNGHATMCVMLSNRRKNLQSVRDVWARQG
IKSALDVAVAMNDLSIVVDVLNIINVQPSLWTLDVCASSLPQIDTLLQSKYESYMQCGCT
SLKIIMKYFWPLVCETLKAGPSVGVDVTREERQHKCHVCSKHLQNINNVVKSKAAQVGRH
GSAFGELRMLMAQLDQHS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagccgccgccaagatctcctggcgactgcaggagtttgaggctcacggcagt
cgcgtttgctgcgcctctctgggcaaacgtacgggtcgcctcctggcgagcgcaggtgaa
gattgcaaagtcaacatctggtccgtcagcaaggccaactgcatcatgagtctgtgcggc
cacaggaaggtggtggagtgcgtccacttcaacgcgtccgaggagcagctggccaccggc
tcacagtcgggatccatcctggtgtgggacctggaggccgccaagatgctacgaacgcta
ccgggacacaaatccagcatcaccagttttgctttccatccttttggagactttttggtg
tctggctccaccgacaccaacatcaagatgtgggacgtgcgcaggaaaggccccatttac
aggtacaagggtcacaccgcggccgtccggagtttggccttcagccctgacggaaagtgg
ttggcgtcggcgagcgacgactgcacggtcaagctgtgggacctgaagcaggccaagacc
atcacagagttcacggcgcacacggcggctgtcggcaccatccagttccaccccaacgag
tatctgttggcctcgggtggcgctgacaggtgggtgaggctgtgggatcttgagaaattc
tgccaggtgggggcgctacaggacacgggtgccgtcaggtgtgtgatgttcagcgccaac
ggcggctgcctgttcagcggccacgccgacgccctgggcgtgtgcacgtgggaacccgaa
cgctggctggacacggtgacagtgggctgggggcgggtggccgacctggcgctctgcaac
cagcagctgatggccgtgtctcaccagctgagcagtgtgtcaacctacgtggtggacctt
aagcgcgtcaagaccagcgctgcgccaaatgtcgccgcggagaatgacatggctccggcg
gccccggccggcgtgcagcccactggcgccaaggtgggcggaccgcgccgcagctaccaa
cgcccggcctcgccgtctcaaggcctcaagaggagcgcggaagccgaaaggcggagtccc
gaaggggagaggcgtagccccagcgaagacgaggcggacgacaaagcttcctcggcccaa
atccacaacgcgcaagactaccgggaaatattccagccccgcaacgccatctgtcggacg
cctcccgggatgtcggagccttttcccgccccgcccgaggacgaaggagccgatggcaat
gtggcggcggcggcggcggcgctgctttgtcccgaccaacagccaccggtttccacgtcg
gcagccccgtccactccggtccagcgggtggagccgacggtggttgcctgtgtgaaacgg
gccgccccgtccgccagcgagcaagtccagcctccgccggacgaaatattcccggccggc
aggagcgagcccagcggcctggacgtggccgacttcctgtcggcccgccgcggcggagga
atcctaagcgagagcgacgttttgaatcacattcaaaacgggcacgccaccatgtgcgtc
atgctcagcaaccgacgcaagaacctgcaaagtgtcagggacgtgtgggcccgccagggc
atcaagagcgcgctggacgtcgccgtcgcaatgaacgacctgtccatcgtcgtggacgtc
ctcaacatcatcaacgtgcaaccgtcgctatggactttggatgtgtgcgcaagcagcctt
cctcagattgacacccttctgcagagtaaatatgaaagttacatgcagtgcggttgcaca
tccctgaagatcatcatgaaatatttctggccgctggtctgcgaaacgctgaaggcgggg
ccatcggtgggcgtggacgtcacgcgagaggaacggcagcacaagtgccacgtgtgcagc
aagcatctgcagaacatcaacaacgtggtgaagagcaaagcggcgcaggtggggcggcac
ggctccgccttcggggaactgcggatgctcatggcgcagctggaccaacactcgtga
DBGET
integrated database retrieval system
