Syngnathus scovelli (Gulf pipefish): 125967474
Help
Entry
125967474 CDS
T08785
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125967474
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125967474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
Gal_Lectin
Ion_trans
PKD
GPS
Abhydrolase_9_N
Motif
Other DBs
NCBI-GeneID:
125967474
NCBI-ProteinID:
XP_049574570
LinkDB
All DBs
Position
Unknown
AA seq
2508 aa
AA seq
DB search
MDHTAFAVLSLFFVFLSSTCFATGDSDSLSCSEYQESFDGSCYEFVGLQRPFLGAQKWCE
RGGGHLVFILNDKTQKFLQKHLDPKKDWWIGLAPAAPNLTLDTAATQVSLAWLNGSDVSY
AKWKKEPDAQATCGHILKKSGYKWEASENCTQELSFICQFESGRSFACEGQNATLQCGSG
QVIEIKESFYGRKTIHYCRTKLATTPSAPLEECTWTDVADAVKGSCHGLQACQAPADAKS
YGAPCPLLGSYLSVEYRCNDGLHLLMSKLAAVFDNVTINIKWLLQAYEGNLTCSLNAGDG
YTIDPITPEEKESTVMHTFKTPGLFVVTVECSSSDWHVSAQKSISIQEPVGPFGDIKCYS
TNMSEGGTNCSLLYSGGPIDVSVTVETGTNVSYILQYKDLLLANSSADRGTVGHNITLKA
SAVEQLGRGCNNLTLSASNNVTSQTMSTQFELCLLEPVEGLQASVISENGQCPNSSDLII
GVSLERGAPVQLLFTLTTNEVTHSESRDILNGSLRTYTFGKPLEGSFTLNVQAVNAFSSS
DINVSLESIMLACKKYADSQNQTTGESYDLKVISTPESVVDYTQNITLSVNGSVSLPSKG
LDFKWKCRGDCKCSDQTNNTTHVIDKRCLPNPFEMSVYTVTVKKTAWFREWAQLASAFKC
ISVVPAEFKNVSISCDNCTSINVNNPVKLRLNCVATCPDVDWYTEDPKPLMDDLETCYSH
EGRRPLTKKQEGNLEFLVNNQQLKYSRDNLLNITVIAQGKSEQGYARYTLPIPDPEPEPT
QAPTDPTCSILPLSGTVLDSFDITCQASSFCSSGCLYCFKTDTGKHLRCSNKEFVKSILL
PAGDEKNNYNLSIVVTVKNESAEVTTVVHAQVRENNFSTSVDTLQSVLEDTVSQLEQDGL
LSGEALGQIVTSVADMLNTEAGEDQKDARTKLREQMLTKMTTVLLDSPSSTNHEVQVTAR
AVAGLTQRSDELSPAAQEEASSLLVDLSSSLNIISVNQNGSADDLEVMDGATPIVQAASN
ILNASSNEKVSHSLLTGMSNVQNALLNHKKLNGDPIIIDSNQISVYVNRVSPENMQIQDI
NIQRSSASRFSFPTLPSDVFSPDEPVDVRMMSFEKNPYSWNGGNISGTVGSVSLTTTNGT
VIPVNNLPEEIEILLPRPDVGQENSTVLDLANFSTLIIDVPSPDVTLVLKMEPSENITFV
LLLGYKNYPTNDDYVAKTQMPLENVKEEEKYTWVLSPQDRTGDAGVHFLVLKPKVEPGVK
SVNATVRIVTIAAQCKYWDEDESSWSEDGCRVSLRHLILVTFKKHNFPFLLFXQVGPLTT
PFLTQCLCNHLTFFGSSFFVMPNLVDVSRTAELFATFFNNPVVVSFVAAIFGAYLLVVVW
ARRKDIQDTAKVKVTVLEDNDPLAEYCYMLTVGTGHRHGASTSSQVTITLLGTEGESEPH
HLTDLEKPLFERGADDVFLLTTHFSLGELQSIRLWHDNSGTHPAWYVNKVMVQDLESGQK
WHFLCNSWLAVDVGECTLDKVFPVATEEDLKRFSNLFFMKTAKDFRDGHIWFSVISRPPC
STFTRVQRVSCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQVMIGIQSSIIM
FPINLLIVSIFRNTRPREKAPKSDKTKQGKTVRVSPSQASSPQKVQKEITPDTVLKDIKR
MAQSLSKAMKSPLPHLELRPGQQTDINTLLSLVENIIRQQNRTSSDFYTDTAKREHSILS
LGAVDLQEKTLWGSPEKTSDEVQKKSNNSRYLYRQLRHVENKLGFLGSSRFQNPDSYNKA
MQQVQGMKNLLEFHLPSHSLDGEQSERSPSPEESANKGAGKKCCQGGLPWWFVFVGWILV
IATSGVSGYFTMMYGLTYGKDRSISWLISMVVSFFESLFITQPLKVLGFAAFFALVLKKV
DQEEYGEPQLDESLKNSDDPDVVRAARRDSTCGFYKPPPPTDIEKMRNNMIKEQKVFGLI
KEILAYMGFMWMLLLVAYGQRDPNAYFLTQHIRQSFSKGISDTMSIQDVYNWANTTLISN
LFGEHPGFITDGNSKLVGNARLRQLRVQKNSCRVARRMQHAVHDCHSLYSWESEDMGSYG
PGWNNSQADNTSIYLPSPWKYQSQAKLRAFPIWGSMVLYRGGGFVVDLGPDLQNSSRSLQ
YLYENRWFDAHTQAILVEFTVYNANVNLFCIVTLLLETTALGAFQFRSELQNVRLYQSTG
GLHIFVMASEAIYFLFILYYMFVQAKLMKQQKWAYFKSKLNLLELAIILLSWSALSVFIK
RTLLGKRDMEYYQNHKDQYASFHETAKADAVLGYLIAFLVLLATIKLWHLLRLNPKLHMI
TATLQRAWTDISGFLVVMTIMFLAYSIASNLMYGWKLYSYRTLFDAAQTMVSLQLGIFNY
DEILNYNPILGAFLIGSCIVFMTFVVLNLFISVILVAFSQEQIHHKPSEEEEIVDMMMMK
LCSLFGIKCKSKQGDDGRSEKAGLSCASNNGIATISSVCVDKDSYVPL
NT seq
7527 nt
NT seq
+upstream
nt +downstream
nt
atggaccatactgcttttgcagtcctgtctttattttttgtctttctcagctcgacttgc
tttgctacaggtgattcagattctctctcctgctctgaataccaagagagttttgatggc
tcctgctatgaatttgtgggtctgcagcgtcctttcctcggtgcacagaaatggtgtgag
agagggggaggacatctcgtcttcatcttgaacgataagactcagaagttccttcaaaag
catctcgatccaaagaaggactggtggatcgggttggcgcccgctgcgccaaacctcact
ctggacactgctgccacacaagtttctctggcatggcttaatggctcagatgtcagctac
gctaaatggaagaaagagcctgatgcacaagcaacctgcggacatattctcaaaaagtca
ggctacaagtgggaagcgtcagagaattgcactcaagagcttagcttcatctgccagttt
gagtccgggagatcttttgcatgtgagggccaaaacgccacattgcagtgcggctctggg
caagttatagagataaaagaaagcttctatggtcgaaaaacaattcattactgccgaacc
aaactcgccaccacaccctcagctcctctggaggagtgcacttggacagatgttgcagac
gctgtgaaaggcagttgccatggactgcaggcctgccaagctccagcagacgccaaatct
tacggcgccccctgtccactcttaggaagttacttgtctgtggaataccgctgcaacgat
ggactccacttactgatgagtaagttggcagcagtgtttgataatgttactatcaatatc
aagtggctcctgcaagcatatgaggggaaccttacatgctctctgaatgctggagatggc
tacactattgatcccatcaccccagaagaaaaggaaagcacggtgatgcacacattcaaa
acccctggacttttcgtggtcacagtcgagtgttccagcagcgactggcatgtgtcagct
caaaaatccataagcattcaggagccagtaggtccgtttggagatatcaagtgctatagc
accaacatgtcagagggtggcactaactgcagcctgctctacagcggagggcctattgat
gtttccgtcacagtggagacaggtacaaatgttagttacatccttcagtataaggacctt
ttactcgcaaactcctcggctgaccgagggaccgtaggtcacaacataacattgaaagca
agtgcagtggagcagcttgggcgtggctgtaacaacctgactttaagcgcttccaacaat
gtcaccagccaaacaatgtccactcagtttgagctgtgtctgctggagcccgtggagggg
ctgcaggcatcagtgatatcggagaatggccaatgtcccaactccagtgacctcattatt
ggggtctcgctggagcgcggagctcctgtgcagcttctctttacactgactaccaatgag
gtcactcactctgagagcagagacatactcaatggaagcttacgaacatacacctttggc
aaaccacttgaaggatcatttacattgaatgtacaagctgtgaatgctttctcgagctct
gatattaacgtgagcctggaaagcataatgctggcatgcaaaaagtacgctgactctcaa
aaccagactactggcgagtcttatgatttgaaagtaatttccactccagaatctgttgtt
gactacactcagaatatcaccctcagcgttaatggaagtgtgtcattgcccagcaaagga
cttgactttaagtggaaatgtagaggggattgcaagtgtagcgaccaaacaaataacaca
actcatgtgattgacaaacggtgccttccaaatccatttgagatgtctgtctatactgta
actgtgaagaaaacagcctggtttagggaatgggcccaactagcttcggctttcaagtgc
atctctgttgttccagctgaatttaaaaatgtctccattagttgtgataattgcacttcc
attaatgtgaacaaccctgtaaagctgagacttaattgtgtggcaacttgcccagacgtg
gactggtacacagaggatccaaaaccactgatggatgatcttgaaacctgttattcacac
gaaggaagaaggccgctgacgaaaaagcaagaaggcaacttggagtttcttgtaaacaac
caacagctcaagtattcgagggacaacttacttaacattactgtgattgctcaaggaaaa
tcggagcaaggttatgccaggtacaccctacccataccggatccagaaccagaaccaact
caagcccctacagacccaacatgcagcatccttccactctcaggcactgtacttgactca
ttcgatatcacctgccaagctagttctttctgttcttcgggttgcctttattgcttcaag
acagacacaggcaaacatctgcgttgcagtaataaagaatttgtgaaatctatcttgttg
cctgctggagacgaaaagaacaattacaatttgtctattgtggtgactgtgaaaaatgaa
tctgcggaagttactacggttgtccacgctcaggttcgggaaaacaacttcagtacttcc
gtggacactctccagtcagttctagaagatactgtctcccagttggagcaagatggtctt
ctctctggtgaggcccttggccaaatagtcacctccgtagctgacatgctcaataccgag
gctggtgaggatcagaaggacgcaaggacaaagctcagagagcagatgctgaccaaaatg
acgacagttctgctggactccccgtcaagcactaatcacgaggtgcaggtgacagccaga
gctgtagccggactcacacagcgttcagatgagctgagtccagcagcccaggaagaggca
agttcgctcttggttgacctaagctcttccctcaacattatcagcgttaaccagaatgga
agtgcggatgatttagaagttatggatggagccacaccaattgtccaagcggccagtaat
attttgaatgcttcgtcaaatgaaaaagtttcccattccctactgactgggatgagcaat
gtacagaatgccttgttgaatcataaaaaattaaatggagatccgatcatcattgactcc
aatcagatcagtgtgtatgtaaacagagtatctccagagaacatgcagatacaagatata
aacatccagaggagcagtgcttctagattttcctttccgactctgccttctgatgttttc
tcaccagatgagcctgtggatgtcagaatgatgagtttcgaaaagaacccgtattcttgg
aatggtggaaatatttcgggaacggtgggatctgtgtctctcacgacgaccaacggaact
gttatccctgttaataatttgcctgaagagattgagattctcttgcccaggccagacgtt
gggcaggaaaacagtacagttttggacctagccaatttcagcacattaataattgacgtt
ccctcgcctgatgttacgctggtgctgaagatggagccctctgaaaacattacctttgtc
ttacttttgggctacaagaattatccaacaaatgacgattatgtggccaaaactcagatg
cctctagagaatgtaaaagaagaggaaaaatatacctgggtcctcagtcctcaagacaga
accggagatgccggcgtgcacttccttgtcttgaaacccaaagttgagcccggcgtcaaa
tctgttaatgccacagtcagaattgtaactattgctgcccaatgcaagtactgggatgaa
gacgagtcatcttggagcgaagacggttgcagggtaagtttgcggcatcttatactggtg
acatttaaaaaacataattttccctttcttctctttnngcaggttggcccactcactaca
ccttttctcactcagtgtctgtgtaatcacttgactttcttcggcagctctttctttgtc
atgccaaacttagtggatgtgtcacgcaccgcagagctctttgccactttctttaataat
cccgtggtggtgagttttgtggcggccattttcggtgcttatcttctggtggtcgtatgg
gcgcgtagaaaggacattcaggatacagctaaggtgaaggtaacagtgcttgaagataac
gacccactggcagaatactgttacatgctgacagttggcacagggcatcgccatggtgca
tccacgtcctcgcaggtgaccataaccctgctgggaacagagggggaaagcgagccccac
cacctgactgatttggagaaacctctgttcgaaaggggtgcagatgatgtatttctcttg
accacgcacttttcccttggagagctgcaaagcatcaggctgtggcacgacaactcgggc
acacaccctgcatggtatgtcaacaaagtgatggtgcaagatctagagagtggccaaaag
tggcactttctctgtaactcctggcttgctgtcgacgtgggagaatgcaccctggacaag
gtcttcccagtggccactgaggaggatctgaagagattcagcaatctttttttcatgaag
acagccaaagatttccgcgatggacacatctggttctccgttatcagtcgccctccgtgc
agcaccttcactcgtgtgcagcgagtgtcctgctgcttttccttgctgctctgcaccatg
ttgactagcatcatgttttggggcatccccacggatccctcagagcagaccatggacctt
ggtcacatcgaattcacctggcaacaagtcatgattggtattcaaagttccatcatcatg
tttcctatcaatcttctcattgtgagcatcttcagaaacactcgtccacgggaaaaagct
ccaaaatcggacaagaccaaacaggggaagacggttcgagtatctccttcacaggcgtct
tcccctcagaaagtgcagaaggagatcacaccagacacagtgctgaaggacataaagaga
atggcccagtcactgtcaaaggccatgaagagtcccctgcctcatttggagctccggcct
ggtcaacagactgatatcaacacccttttgtctctggtggagaacatcatcagacagcaa
aaccgaacttcctctgacttttacacagacactgccaaaagagaacactctatcctcagt
cttggggcagttgatcttcaagaaaagactctttggggcagtccggagaagacctcagat
gaggttcagaagaagagcaacaacagcagatacctgtacaggcaactgcgtcacgttgaa
aacaagctgggtttcctgggatcttctcgattccaaaacccagacagctacaacaaagcc
atgcagcaagttcaagggatgaagaatctgctggagttccacttgccgtcacacagcctc
gatggggagcaatcggagcgtagtcccagtccagaagagagtgccaacaaaggtgctggc
aagaaatgctgtcaaggggggctgccgtggtggtttgtctttgtgggctggattttggtg
attgcaaccagcggtgtgtctggatacttcaccatgatgtacgggttgacctacggcaaa
gatcgttctataagctggctgatctccatggtggtgtccttctttgaaagtttgttcata
acacaacctcttaaggttcttggctttgctgctttcttcgctcttgttctgaagaaggtg
gatcaggaagaatatggagagcctcagcttgacgagagccttaagaattctgatgatcct
gatgtggtgcgagcagcacggagagacagcacatgcggtttctacaagccgccacctcca
acagacatcgagaaaatgaggaacaacatgatcaaagagcagaaagtctttggtctcatt
aaagagattctggcttacatgggattcatgtggatgctgcttctggtggcgtatgggcag
agggatcccaatgcttacttcctgacccagcacattcgccagagctttagcaaaggcatc
tcagacacaatgagcatccaagatgtgtacaactgggcaaacacaactctgatcagcaac
ttgttcggagagcatccaggattcatcacagacggaaactcaaagctagttggtaatgct
cgtttacgccagctgagagttcagaaaaactcttgccgtgtggcgcgtcgcatgcaacat
gcagtgcatgactgccactctctctactcatgggagtctgaagacatgggttcctacggt
ccaggctggaacaactctcaggccgataatacctcaatttacctccctagtccctggaag
taccagtcccaggcaaaactgagagccttccccatctggggaagcatggtactctacagg
ggagggggctttgtggtggatcttggaccggacttgcaaaactccagcaggtctctccag
tatctctacgaaaaccgctggtttgatgcgcacacccaagcgatccttgttgagttcacc
gtgtacaacgctaacgtcaacctcttctgcattgtcacactcttgcttgagaccacggct
cttggagctttccaattccgtagcgagctccaaaatgttcgtctctaccaatcgacgggg
ggcctccacatctttgtcatggcctctgaagccatttacttcctcttcattctgtattat
atgtttgttcaggcaaagctgatgaagcaacagaaatgggcctacttcaagagtaaattg
aatctgcttgagctggcaatcatacttctcagttggagcgctctgtccgtgtttatcaag
agaactctgctggggaagcgagacatggagtactaccagaatcacaaagaccaatacgcc
agtttccatgagacggccaaggcagatgcagtgctgggctatctgattgccttcctggtg
ctgctggcaacaatcaaactgtggcacctgctgagactcaacccgaagctacacatgatc
acagcaacgctccagcgagcctggactgatatctccggcttcctggtggtcatgaccatc
atgtttctggcctactctattgcttccaacctcatgtatgggtggaagctgtactcttat
cgcactctatttgatgctgctcagactatggtcagcctgcaactgggcatcttcaactat
gatgagattcttaattacaacccaatcctgggcgccttcctcatcggttcctgcattgtt
ttcatgacgtttgtggtgctcaacctcttcatctctgtcatccttgtggcgttcagtcaa
gaacaaatacaccacaagccatccgaggaggaagagattgtggacatgatgatgatgaaa
ctttgcagtctgttcggaatcaaatgcaagagtaagcaaggggacgacggccgctctgag
aaggccggactttcatgtgcttcaaataacggaattgccacaatttcttctgtgtgtgtt
gacaaggactcttatgttccactttag
DBGET
integrated database retrieval system
