Syngnathus scovelli (Gulf pipefish): 125967559
Help
Entry
125967559 CDS
T08785
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125967559 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125967559 (copb1)
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125967559 (copb1)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
125967559 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT_2
HEAT
Cnd1
HEAT_EZ
Arm
MMS19_N
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
125967559
NCBI-ProteinID:
XP_049574701
LinkDB
All DBs
Position
4:13108205..13116575
Genome browser
AA seq
953 aa
AA seq
DB search
MTAAENVCYTLINVTSDSEPPSEVSLKTDLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRSCLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLVELKEHPTHERVLQDLVMDILRVLGTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDTLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKEDIQNVMTEIR
RSLGEIPIVENEIKKETGELKPEDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKDEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVAIAQDKKQQNSFVAEAMLIMVTVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRKSLSHMLTVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKNETSSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITDLNQYLQHILKSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKATL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgcggagaatgtctgctacactctgatcaatgtcacttctgactcagagccc
ccctctgaagtcagtctcaagactgatctggaaaagggggagattaaagcgaaaactgag
gcactgaagaaagtgatcatcatgatcctgaatggagagaagttgccaggacttctgatg
accataattcgctttgtgttgcctcttcaagaccacaccattaaaaaactcctgcttgtg
ttttgggagattgtgcccaaaaccactccggatggcaagcttctccaggagatgatcctg
gtctgtgacgcctacaggaaggacctgcaacaccccaatgagtttatccgtggctccacc
ctccgtttcctgtgcaagttgaaggagtctgagctgcttgagcctctcatgccagctatc
cgctcttgcctggaacaccgacacagctatgtacggcggaatgccgtcctagccatttac
accatttacaggaactttgaacatctcatcccggacgctccagagctgatccatgacttt
cttgtgaatgaaaaagatgcaagctgcaagagaaacgcttttatgatgctgattcatgca
gatcaggatcgagctctggattacctcagcacatgcattgatcaagttcatacttttgga
gatattcttcagcttgtcattgtggagcttatttacaaagtgtgtcatgcaaacccttct
gagcgtgcccgcttcatccgttgcatctacaacctgcttcaatcgtccagcccagcggtg
aagtatgaggcagctggcacgcttgtaacgctctcgagtgcacccacagctattaaggcc
gctgcccagtgctacattgatttgattatcaaggagagtgataacaatgtgaaacttatc
gtccttgatcgtctggttgagcttaaggaacatcccactcatgagcgtgtactccaggac
cttgtgatggacatccttcgtgttcttggcactcctgacctggaagtgagaaagaagacc
ttgcagctggcccttgatcttgtgtcatcacgcaacgtggaagagttggtgatcgttttg
aagaaagaggtgatcaagacaaacaatgtcactgaacatgaagacacagacaaatacagg
cagctgttggtgcgcactcttcactcttgcagtgtgcgattccctgacatggcggctaat
gtcattcctgtgctgatggaattcttaagtgataccaatgaagcagccgccgctgatgtg
ctggagtttgtgcgagaagccattcaaagatttgacaccttgagaccactcatcattgag
aagatgctggaagtttttcatgccattaaaactgtcaaaatctacagaggagcgctgtgg
atcttgggtgaatactgcagcacaaaagaagacatccagaatgtgatgacagaaatccgc
agatcactgggagagattcctatagtggaaaatgagatcaagaaagagacaggggagttg
aagccagaggatgaagtgagtgccgctccagcccagaagctggttacagagatgggcact
tatgtaacgcagagtgccctcagctcatccaggccttccaaaaaagatgaggataggcct
ccactcaggggcttcctgatggatggtgacttctacgtggctgcctccctagccacaacc
ctgaccaaagtggctttgcgctacgttgctattgcccaagacaaaaaacaacaaaattct
tttgttgcagaggccatgttgatcatggtcactgtgctgcatttgggcaagtcgtcgctg
cccaagaaaccaattacagacgacgatgtggaccgaatctccctgtgcctcaaggtgctg
tcagagtgctcgccactcatgaatgacattttcaacaaggagtgccgcaaatccctgtca
catatgctgactgtcagactggaggaggagaagctttcacagaagaaagagtctgagaag
cgtaacgtaacggtgcaggcggacgacccaatctccttcatgcagctcacagccaaaaac
gagacgagctctaaggaggaccagtttcaactcagtctgttggctgctatggggaacact
caaaggaaggaggctgctgatcctttggcttcaaagctcaacaaggtgacccagctgacg
ggtttctctgacccagtgtacgctgaagcctatgtccatgtcaaccagtatgacattgta
ctggatgtgctggtggtcaatcaaaccagtgacacactccagaactgtactcttgagctt
gctacattaggtgacctgaagcttgttgagaagccttccccacttactctggcccctcat
gactttgccaacatcaaggccaatgtcaaagtggcttcgactgaaaacggcatcatcttt
ggcaacatagtgtatgatgtgtctggagctgcaagcgacaggaactgcgttgtcctcagc
gacatccacattgacatcatggattacatccagccggcgtcctgcacagatgctgaattc
aggcagatgtgggctgagtttgagtgggaaaacaaggtgacagtgaacacaaacatcact
gatttgaaccagtaccttcaacatatcctcaagtccacaaacatgaaatgtctgactcca
gagaaggcattgtccggcttctgtggtttcatggctgccaatctttatgcccgttccatc
tttggtgaagatgccctggcgaatgtcagcatcgagaagcccattcacctggggcctgat
gcacctgtcaatggacacatacgcattcgagccaaaagtcaggggatggccttgagtctg
ggcgacaagatcaatctctcccaaaagaaggccactctctga
DBGET
integrated database retrieval system
