Syngnathus scovelli (Gulf pipefish): 125967580
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Entry
125967580 CDS
T08785
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125967580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125967580
03036 Chromosome and associated proteins [BR:
sscv03036
]
125967580
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125967580
Coactivators
SAGA/TFTC/STAGA complex
125967580
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125967580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
125967580
NCBI-ProteinID:
XP_049574726
LinkDB
All DBs
Position
4:20122561..20167876
Genome browser
AA seq
1097 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLTGQSNATAKSDESRGAGSVAPANHHLGK
TLPAPLGSTTVDQQQQGRRNKPDMRQDLNSTEKTVTSPSQDTPLPSGETPAAAAAAAASA
SNSSSQSHGASITTLPASGVSTSPPASSISTATTSDHPTKASPDSDEPIADASKRRFATP
RRTFSARIKSLNGAAVTNRGNSSGSSPTAGGDDACGSPTDLPPASTSASNTPTFTLANAS
LSASQSAIALDRGTPTIALQRLPSHIVASIAQNGTSASALSQQGAQTPPVTSPPSASSLT
SSPPAQENHTKSATEPAGTPNECQSTSVTTSSVINTVSSVAVTTTPTASTTAVTQPLTTS
ATTATTTTTIAAVSVTTTSVGGQTTSVTTTISTVRPTSAAPTTPAITVAPAVPAIPVAPV
APAAPAAASPTTQTPTRPGLAAPQRIVAPQLIVRPPQQQTTIQLPPGFTIPSGMVLVRTE
LGQLVLVPQQALAQAQAQAQAQAQGQVQAQNNITPRPATPTTGASFRVSTPQSPASSQTT
RQCALTPAKVAPSPAPSSPALQTTSSSSSSSSSTPSFVTSCPALRPKGPVAPAVAVTAPQ
QTPAVSAPQAQPAQTASQPPQTTGIAVAPGAPVVSQEMQENVKKCKNFLATLIKLASHNS
PSPETSKNVKALVQDLLDAKIEPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLNS
QQSLTQPPQQGIKPATTPIASGPAVHVRPPNSVGPITGAGALPHGTMGHAATTGLKTTGA
MGGQVRMPVMITQSMRAQGTMGKVGTFQAGRSPVGLAVQISGNQKNKLNDPGGGSFRDDD
DINDVASMAGVNLNEESARILATNSELVGTQIRSCKDEAFLHPGLLHRRILETAKKFGVM
DVPMEVVTFISHAAQSRLRTVVEKVSAIAQHRLDSCKDDECYEQSADVRSQLRFFEQLER
MEKARKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAI
GPRKKRKVDSPGATPSGTELSGSTAGSPAGSSSAPSSSSRQYARQRITRVNLRDFIFYME
QERDTAHSLLLYRALLK
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgatcccctggaagatatgctattttccgaggtagatgagaaggct
gtgagtgacttagtaggctcactggagtctcagctgaccggccagagcaacgcgacggct
aaaagcgacgagagccgaggcgctggctcagttgcccccgctaaccatcacttggggaaa
acgctaccagctccgctgggctccacaacagtagatcaacaacaacaagggcgccgtaat
aaacccgacatgcgccaggatttaaactccacggaaaaaactgtcacatctccttcccag
gacaccccgcttccgtccggtgagacccctgccgccgccgccgctgccgctgcatccgcc
agtaacagcagctctcaatcacatggagcatccatcacaacactacccgcgtctggcgtg
tcaacttccccgccggccagcagcatcagcaccgctaccacctccgaccaccccacgaag
gcttccccggactccgatgagcctatcgcggacgcttcaaaacgacgctttgccaccccg
cgacggaccttctcggctcggattaagagtttgaacggtgccgccgtgaccaaccgaggc
aacagcagcggcagcagccccacggcggggggcgacgatgcctgcggcagccctaccgac
ctcccgccggcgagcacctcagctagcaatacgccgactttcacactcgccaacgccagc
ctatctgcgagtcagtcggccattgccctggatcgaggcacccccaccatcgctttgcag
agactccccagtcacatagtagccagcatagcccagaacggcaccagtgcgtcggcgttg
tctcagcaaggtgctcagacgccccctgtcacttcgcccccatctgcctcctccttaacc
tcctcgccacctgcacaggagaaccacactaaaagcgccacagaacctgcagggactccc
aacgaatgtcagtccacaagtgtcactacgagctctgttataaacactgtttcctccgtt
gccgtgacaacaacaccgaccgccagcactaccgcagtaactcaacctttaaccacaagc
gctactacggccaccaccaccaccaccatagcagccgtctcagtgacgacaaccagcgtc
ggcggtcagaccacatcagtgaccaccacgatcagcacggtccgacccaccagcgccgcc
cccacaacccctgccatcactgtcgcccccgctgtcccagccatccctgtcgctccagtc
gccccagctgccccagccgcagcctcgccaaccacgcagacacccacccgccccggtctg
gccgcacctcagaggatcgttgcgccacagctcattgtcagaccgccccagcagcagacc
accatccagctgccacctgggttcaccatcccgtctggcatggtgctcgtgcggaccgag
ctgggccagctggtgttggttcctcagcaggcattggctcaggcacaggcgcaggctcag
gcgcaagctcagggtcaggtccaggcccagaataacatcactccgcggcccgccactccc
actacgggggcatccttcagagtcagcactccgcagtctccggcaagctctcagaccacc
agacaatgtgctctgaccccagccaaggtggcaccctctcctgctccttccagccctgcc
ctccagaccacctcctcttcttcttcttcctcttcctctactccttccttcgttacctcc
tgtcccgcactacgtccaaagggccccgtggcgccggccgtggcggtgacggctccgcag
cagacccccgcggtttccgcaccccaggcgcagccggcccagaccgcctcgcaacccccg
cagacgacgggcatcgccgtggcccctggagctcctgtcgtgtcccaggagatgcaggag
aacgtgaagaagtgtaaaaacttcctcgccacgctcatcaagctggcgtcgcacaattcc
ccgtcaccggaaacctccaagaacgtcaaagctctggtgcaagacctgctggacgccaag
attgaaccggaggagttcactagccggctgcagacggagctcaagtcgtcgccacagcct
tacctggtgccctttcttaagaagagcctcccagccctgcggctgtctttgctcaacagt
cagcagtcgctgacccagccgccgcagcagggcatcaaaccagcaacgacgcccatcgca
agcgggccggccgtccacgtacgacctccgaacagcgtcgggcccattacgggggctggt
gccctaccccatgggaccatgggccatgcagctaccacgggtctgaagaccacaggcgcc
atgggcggacaagtccggatgcccgtgatgatcacgcagtccatgagagctcaaggcacg
atggggaaggtgggcaccttccaagcagggaggagtccggtgggcttggctgtccagatc
tccggcaatcaaaaaaacaagctcaatgaccccggaggaggttctttcagggacgatgac
gacatcaacgacgtggcctccatggcgggcgtcaatttgaacgaggagagcgcccgcata
ctcgccaccaactcggagctggtcggcacgcagattcgctcgtgcaaggatgaagccttc
ctccacccggggctgctccaccgacgcattctggaaacagccaagaagtttggcgtcatg
gacgtgcccatggaggtcgtgacgttcatctcacacgccgcacagtcgcgactccgcact
gtcgtcgaaaaggtttcggccatcgctcagcacagactggactcctgcaaggacgacgaa
tgctacgagcagtcggccgacgtacgctctcaactgcgctttttcgaacaactcgagagg
atggaaaaagcgaggaaggacgagcaggaaagagaaattctcttgaaagccgccaagagc
cgctccaggcaagaggacccagagcaagctcgactgaaacagaaagccaaggagatgcag
caacaggaactagcccagatgaggcagcgggatgctaacctcacggcactggcggctatc
ggaccccgcaaaaaacgcaaagtggactcgccgggggccaccccatcagggactgagctg
tcgggcagtacggcgggctccccggcgggctcgtcgtcggcgccctcgtcgtcgtctcgc
cagtacgcccgtcagcgcatcacccgcgtcaacctcagggacttcatcttctacatggag
caggagcgagacacggcccactcgctgctgctctaccgcgctctactcaagtag
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