Syngnathus scovelli (Gulf pipefish): 125967705
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Entry
125967705 CDS
T08785
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125967705
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125967705
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
125967705
NCBI-ProteinID:
XP_049574960
LinkDB
All DBs
Position
Unknown
AA seq
780 aa
AA seq
DB search
MEGFLRSSFLLSRVMSTKQATSPFASVVDGDDAMSQDHLSWEKEETADAHCTPQLPLHNL
LHGKAHPDEIQPLSSVPSESDWDSLVSAQQRMESDSNKVCSLYSFRNNSTSPHKPEEGAR
ERGDLLSASAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDDSSCMEKLLSKDWKEKME
RLNTSDLLADVKGTPESLAEKEHQLSTMISQLISLREQLLAAHDEQKKLAASQMEKQRQQ
MELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAA
QQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMP
PLPQPLTASGPISPSSLKNDKSSASPITQVKEEGTQPLNLSARPKTTDMVKSPTSPTQNL
FPGCKSNPNSFANKGGIPSPLGVGLGRGSSLDILSSLNSTALFGDQDTVMKAIQEARKMR
EQIQREQLQHHQGMEAKLSALTAVGLNNCRIDKERTHFDGIGHHLGKLGEDGKIGHRVID
LTRPEDLDGGTGSAEARVFRESRGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNS
NISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGE
YKQMMRSRRQEMRQFFTVGQPPQIPITTTASMVYPGAIAMATTTPSPQMTSECSSASASP
EPTIPVIQSTFNMKLEANNIANNSETVNGEDDMDMYEDFEDEPKSDYSSENDTQEPVSAN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctttcttcgtagcagctttttactgagcagagtcatgtctaccaagcaagcc
acgtctccttttgcctctgtggttgatggagatgatgccatgagccaggatcacttgtct
tgggaaaaagaggagacggctgacgcccactgcacaccgcagctgccgctgcacaatctg
ctccatggaaaagcccatcccgatgaaattcagccgctaagcagcgtaccttcagagagt
gactgggacagcttggtgtctgcccaacaacgcatggaatctgacagcaataaagtatgt
tcgctgtactccttccgcaacaattccacttccccgcacaagcctgaggagggggcgcgg
gagcgaggcgacctgctgagcgcatcagcgtttggaactccggagcgccgcaaaggaagc
ctggcagacgtggtggacacactcaagcagaagaagctggaggagatgacaaagacagag
caagacgactcatcctgcatggagaaactactttctaaagactggaaggaaaagatggag
aggctcaacacaagcgatcttctcgctgatgtcaaaggtactcccgagagcctggcagag
aaggaacaccagctctccacaatgatcagtcagctgatcagcttacgagagcagctcctg
gccgcccacgatgaacagaagaagctggccgcctctcaaatggagaaacagaggcagcaa
atggagttggcgcgtcagcagcaggagcagattgccagacaacagcagcagcttctgcag
cagcagcacaagatcaaccttcttcagcagcagattcagcaggtccagggtcacatgcct
ccgctcatgatccccatttttccacacgaccaacgcactctggcagcagccgccgccgcc
cagcaaggctttctcttccctccgggaatgtcttataagccaggtgataactaccccgtg
cagtttattccctccacaatggcagctgcggcagcatcaggactcagccccctccagctg
cagcaactgtacgctgcccaacttgccagcatgcaggtctctcctggagccaagatgcct
ccactcccgcagcccctcactgccagtgggcccatttccccctcctctctgaagaacgac
aagagttccgccagtcctatcactcaagtcaaggaggaaggaacacagccgctcaacctt
tcagcacggccgaaaacaacagacatggtcaagtcgccaacttctccaacgcaaaatctc
ttccccggctgcaaaagcaacccaaacagtttcgctaataagggtggtatccccagccca
cttggagtaggcttaggccgtggctcctcattagacatcctgtcaagtctcaactccacg
gcactgttcggggaccaggacacggtgatgaaggccatccaggaggctcgtaaaatgagg
gagcagatccaacgggaacagctgcaacaccaccagggcatggaggcaaagctgtccgcc
ctcaccgcagttggcctcaacaactgcagaattgacaaggaaaggacacattttgacgga
atcggccaccacctcggcaagctgggtgaggatgggaagattggccacagagttattgac
ctcaccaggcctgaggatcttgatggaggtactgggtcagcggaagcaagagtcttcagg
gagtccagagggaggaacagcaacgagccgcacattaagagaccgatgaatgcgtttatg
gtgtgggccaaagatgagcggcgcaagatcctccaggcctttccggacatgcataactcc
aatataagcaagattctgggctcccggtggaagtccatgtccaaccaggacaagcagccg
tactatgaagagcaggcccgcctgagtaagctccacttagagaagtaccccaactacaag
tataagccccggcctaagaggacttgcataatcgacggcaagaagctgcgcatcggagaa
tacaagcagatgatgcgctcacggcgacaagagatgaggcagttcttcacggtggggcaa
ccaccacagattcccatcacgacaacggccagtatggtctaccccggggccattgccatg
gcaacgacgacgccctcaccccaaatgacatcagagtgctcaagtgcatcggcaagccct
gagccaaccatccccgtcattcagagcaccttcaacatgaagctggaggccaacaacata
gccaacaacagcgagaccgtcaacggcgaggacgacatggacatgtatgaagacttcgag
gatgagcccaaatcagactatagtagtgaaaatgacacacaagagccggtcagcgccaac
taa
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