Syngnathus scovelli (Gulf pipefish): 125967754
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Entry
125967754 CDS
T08785
Symbol
myo5aa
Name
(RefSeq) unconventional myosin-Va
KO
K10357
myosin V
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
125967754 (myo5aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125967754 (myo5aa)
04131 Membrane trafficking [BR:
sscv04131
]
125967754 (myo5aa)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125967754 (myo5aa)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125967754 (myo5aa)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
125967754 (myo5aa)
mRNA cycle factors
P-body specific factors
125967754 (myo5aa)
Membrane trafficking [BR:
sscv04131
]
Others
Actin-binding proteins
Myosins
125967754 (myo5aa)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
125967754 (myo5aa)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
125967754 (myo5aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_22
nSTAND3
AAA_16
HTH_17
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
125967754
NCBI-ProteinID:
XP_049575039
LinkDB
All DBs
Position
4:complement(18154982..18182033)
Genome browser
AA seq
1886 aa
AA seq
DB search
MNRELAYMFVDCARVWIPDVEDVWKSAELSKDYKNGDASLQLMLEDGTNLEHKLDPKTKN
LPYLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYETLPI
YGTDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR
YFATVSGSASEANVEEKVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFDNRYRIIGAN
MRTYLLEKSRVVFQADEERNYHIFYQLCASSHLPEFKNLKLSNANDFLYTRQGCSPVIDG
VDDSKELGTTRHAFSLLGINESYQMGLFQVLAAILHLGNVEIRDKDSDSSIIPTNNHHLT
KFCELVGVTYEDMAQWLCHRKLKTASETYIKTLPRLQATNARDALSKHIYAKLFNWIVEH
VNKALITNIKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYM
KEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECRMPKGSDDSWAQKLYNTHLKTCSLF
EKPRMSNRAFIIQHFADKVEYQCDGFLEKNKDTVNEEQIKVLKASKFDLLVELFQDEGKA
TSPTGQPPGMGGRTRLSVKPDKSRDTSSKEHKKTVGCQFRNSLQMLMETLNATTPHYVRC
IKPNDFKQAFSFDPKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVL
SDKKLTCRNVLEKLVEDQDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRCW
LARKKYLRKRDAAITIQRFTRGYQARRLAKFMRRTQAATIIQKYQKMYVARKRYRQKQAA
ALAIQTILRSYMARQKYQALLREHKAVIIQKHARGWLARCWYKRCLSSIVYLQCCTRRMI
ARRELKKLKIEARSVEHFKKLNKGMENKIMQLQRKIDEQTKENKFVNEKLAGLENTYTTE
SERLRGELGRLRGVEEEAKTKGNQVNCLLEELEKLKKELRTTQQEKKTIEDWARSYKGEM
EKLVSELKDQNGLLKTEKDDLNRLIQEQNQQMTEKMARAIAAETQQLEIDLNEERSRYQN
LLTEHLRLEEKFDDLKEHISKPGHRRTDSTHSSNESEYTFNSEFAESEDASHATEDLTRG
MDTSLTLKLQKRLKELEQEKQSLRNELENKEEQFQRARARDESEFKKARGAELEYESLKR
QELESENKKLKHNLAEMRKSLLGSAASSSGAPGSPAYKVLLDQLNSSCEELEVRKEEVLI
LRSQLVSQKEAMQHKETMTEVAVHVEDVSKLKDADELKQAYIGLKDTNRSPRFACKRLEV
RHLLSRLRSAAPDFQKLNEDGELWLVNQGLKETVRLLEHQLQTQRRSYDSEVESLRGELQ
NVKEENNRQQQLLAQNLQLPPEARIEASLQHEITRLTNENLELVADDPTASREARVIILR
RMVDLMEQLEKQDRTIRKLKKQLKVYSKRIGEMGAGQAEGQTSPGQMVDEPIRPVNIPRR
EKDFQGMLEYKKEDEMKLVKNLILELKPRGVAVNLIPGLPAYILFMCVRHADYLNDDQKV
RTLLTSTINSIKKILKKRGDDFETVSFWLANTCRFLHCLKQYSGDDVFMKHNTSRQNEHC
LSNFDLTEYRSVISDLAIQIYQQLIKCMENTLQPMIVSGMLEHETIQGVSGVKPTGLRKR
TSSIADEGTYTLDSILRQLNAFHSTMCQHGTDPELIKQVVKQQFYVIGAVTLNNLLLRKD
MCSWSKGMQIRYNVSQLEEWLRDKNLMNCGAKETLEPLIQAAQLLQVKKKTDEDAEAICS
MCLALTTAQIVKVLNLYTPVNEFEERVSVSFIRNIQTRLRDRCESPQLLMDTKMIYPITF
PFNPSSLALESIQIPSSLNLSFLTRV
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgggaattggcgtatatgttcgttgattgcgctcgggtgtggatccctgacgtc
gaggacgtgtggaagtcggccgagctgagcaaagactacaaaaatggcgacgcctccctg
cagcttatgctggaagatggaacgaatcttgagcacaagctggaccccaagaccaagaac
ctgccctacttgcgaaaccctgacatcctggtgggtgagaatgacctcacggcgctcagc
tacctccacgagccggcggtgctgcacaacctcaaagtccgcttcatcgactccaagctc
atctacacttattgcgggattgttttggtggccatcaacccgtacgagacgctgcccatt
tacgggacggacatcatcaatgcgtacagcggtcagaacatgggagacatggacccgcat
atttttgctgtagcagaagaagcttacaagcagatggcgagggatgagcggaaccagtcc
atcattgtgagcggcgagtctggagccgggaagaccgtttcagccaaatacgccatgaga
tactttgccacggtcagtggctcggccagcgaggccaacgtggaggagaaggtgttggct
tccaaccccatcatggaggctatcgggaacgctaagacaacccgtaacgacaacagcagt
cgctttgggaagtacatcgagatcggcttcgacaaccgctaccggattatcggcgccaac
atgaggacatatctgctggaaaagtccagagtggtattccaggcggacgaagagaggaat
tatcatatcttttatcaactctgcgcatcatcgcatttgccggaattcaaaaacctcaaa
ctaagtaacgccaacgacttcctgtacacccggcagggatgcagccccgttattgacggg
gtggatgacagcaaggagctcggcaccacccgccacgccttctccttgctcggtatcaac
gaatcttatcagatgggattatttcaagttctggctgctatccttcatctgggaaatgtg
gagatcagagacaaagattcagatagcagcatcattcccaccaacaatcatcacctgacc
aagttctgcgagctggtcggcgtcacctacgaggacatggctcagtggctgtgccacagg
aagttgaagacggcctctgaaacctacatcaagaccctccctcgcctgcaggccaccaac
gcccgcgacgccctctccaagcatatctacgccaagctcttcaactggatcgtggagcac
gttaacaaagcgctcatcaccaatatcaaacagcactccttcatcggcgtcctcgacatt
tacgggttcgagacgtttgaaatcaacagcttcgagcagttctgtattaactatgccaac
gagaagctccagcagcaattcaacatgcacgtgttcaagctggagcaggaggagtacatg
aaggagcagatcccttggacactcattgacttctatgacaatcaaccctgtatcaacctc
atcgaagccaagatgggcgtcctggacctgctggatgaagagtgccggatgccaaaaggc
tcggatgattcatgggctcagaagttgtacaacacccacctgaagacgtgctcgctcttc
gagaagccgcgcatgtccaaccgcgccttcatcatccaacattttgctgataaggttgaa
tatcaatgcgatggtttcctggagaagaacaaggacacggtgaatgaagaacagatcaag
gtgctcaaggccagcaagttcgacctgctggtggagctgttccaggatgagggcaaagcc
accagccctacgggtcagccccccggcatgggaggcaggacccgtctcagcgtcaaacct
gacaagagccgcgacaccagcagcaaggagcacaagaagaccgtcggctgccagttccgt
aactcacttcaaatgctcatggaaaccttgaacgccaccacgccacactacgtccgctgt
atcaaacccaacgacttcaagcaggccttctcgtttgacccgaaacgtgcggtacagcag
cttagagcttgtggcgtcctggagacaattcggatctctgctgcaggtttcccgtcaaga
tggacataccaggagttcttcagccggtacagagtgctgatgaagcagaaagatgttctc
tctgacaagaagctgacatgcaggaacgttctggagaagctcgtggaggatcaggataaa
taccagtttggtaagaccaagatcttcttcagggccggccaggtggcctacctggagaaa
ctgcgagccgacaagctgcgcgccgcctgcatccgtatccagaaaaccattcgctgctgg
ctggcgcgtaagaagtacttacgcaagcgcgacgcggccatcaccatccagaggttcacc
agaggataccaggctcgccgcttggcaaagttcatgcggcgcacgcaggccgccaccatc
atccagaagtaccagaagatgtacgtggccaggaaacgctacaggcagaagcaggcagct
gcgcttgccatacagactatcctcagatcttacatggcccgccagaagtaccaagcgctt
ctgcgggaacacaaggcggtgatcatccagaagcatgcccgaggctggctggctcgctgc
tggtacaagcgctgcctcagttccatcgtgtacctgcagtgctgcactcgcaggatgata
gccaggcgcgagctgaagaagctgaagatcgaagcccgctcggtagagcacttcaagaag
ctcaacaagggcatggagaacaagatcatgcagctccagaggaagatcgacgagcagacc
aaagagaacaagtttgtcaacgagaagctggcgggcttggagaacacctacacgacagag
agcgagcggttgcgtggggagctgggtcgccttcgaggcgtggaggaggaggccaagacc
aaaggcaaccaggtcaactgtctcctggaggagctggagaagctcaagaaggagctgcgc
accacacagcaggagaagaagaccatcgaggactgggcacgatcctacaagggcgaaatg
gagaaattggtgtcagaactgaaggaccagaacggcttgctgaagacagagaaagacgac
ttgaacaggttgattcaggaacagaatcagcagatgacagagaaaatggctcgtgcgatt
gcagcggagactcagcagctggagatagatctgaacgaggagcgctctcgttaccagaat
ctcctgacagaacaccttcgcctcgaggagaaattcgacgacctcaaagaacacatttcc
aagcctggccacaggagaacagattccacccacagcagcaacgagtccgaatacaccttc
aactcagagttcgccgaatcggaagacgcttcccatgccacagaagatttgactcgagga
atggatacctcgctcacgctcaagctgcagaagcgactcaaagagctggagcaagaaaag
cagtcattgcgcaatgagttggaaaataaggaggaacagtttcagagggcccgagccagg
gatgaatctgagttcaaaaaggctcgtggggcagagttggagtacgagtccctcaaacgt
caggaactggagtctgagaacaagaagctgaagcacaacctggccgagatgaggaagagc
ctgctgggcagcgcggcttcaagctccggcgcaccgggctctccggcttacaaggtgctc
ctggatcagctgaactcctcctgtgaggagctggaggtacgcaaggaggaggtgctgatc
ctgcgctcgcagctggtcagccaaaaggaagccatgcagcacaaggagaccatgacagaa
gtggccgtccacgtggaggacgtttccaaactgaaggacgctgatgagctcaaacaagcc
tacatcggtctcaaagatacaaacagatctcccaggtttgcgtgtaagcggctagaagtc
agacatctgctgagtaggctcagatcggctgctccagacttccaaaagctgaatgaggac
ggggagctgtggctggttaatcagggcttaaaggagactgtcaggctcctggagcaccag
ctgcagacccagcggcgcagctacgacagcgaggtggaatctctgcgcggtgagctgcag
aacgtcaaggaggaaaacaaccggcagcagcagctcctggcacagaacctccagctgcct
ccggaggcccgcatcgaagctagtctgcagcatgagatcacccggctcaccaacgagaac
ctggagctggtggctgacgaccccacagcatcccgagaggcgcgagtcatcattttacgc
cggatggttgatctcatggagcagctggaaaaacaggaccgaaccattcgcaagctcaag
aagcagctgaaggtctactccaagaggattggcgagatgggagccggccaagcagagggt
cagacgtcaccgggacagatggtggacgagcccatccgcccggtcaacattcctcgccgg
gagaaagacttccagggtatgctggagtacaagaaggaggacgagatgaaactggttaag
aacttaatcctcgagctaaagcctcgcggcgtggccgtcaacctgatcccgggtctgcct
gcctacattctgttcatgtgtgtaaggcatgccgactacctcaacgatgaccagaaggtc
cgcacgctgctcacctccaccatcaacagcatcaagaagatcctcaagaaacgaggagat
gactttgagactgtctccttctggctggccaacacctgccgcttcctgcattgtctcaag
cagtacagtggagatgatgtgttcatgaagcacaacacatcccggcagaacgagcactgt
ctgtccaactttgacctgaccgagtacagatcggtgatcagtgacctggccatccagatc
taccagcagctcatcaaatgcatggagaacacacttcagcccatgatagtgtcgggcatg
ctggagcatgagaccatccagggtgtgtcgggcgtgaagccgacaggcctgcgcaagcgg
acgtccagcatcgccgacgagggcacctacacgctggactccatcctgcgtcagctcaac
gccttccactccaccatgtgccagcacggcaccgaccctgagctcatcaagcaggtggtc
aaacagcagttctacgtcatcggcgccgtcaccctcaacaacctgctgctgcgcaaggat
atgtgctcgtggagcaaaggcatgcagatcaggtacaacgtgagccagctggaggagtgg
ctgcgggacaaaaacttgatgaattgcggggccaaggagactcttgagcctctcatccag
gccgcccaactgctccaggtcaagaagaagacggacgaggacgccgaagccatctgctcc
atgtgcctggccctcaccaccgcacagatcgtgaaggttctgaacctctacactccggtc
aacgagtttgaggagagggtgtcggtttcattcatccgaaatatacagactcgtttgcgg
gaccgctgcgagagtccacagctgctgatggacaccaaaatgatctacccgatcactttc
ccgttcaacccatcttccctcgccctggagagtattcaaatccccagctcactcaacctg
tccttccttacccgcgtctga
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integrated database retrieval system
