Syngnathus scovelli (Gulf pipefish): 125967781
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Entry
125967781 CDS
T08785
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125967781 (chd9)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
125967781 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HTH_CHD1_Hrp3
DEAD
HDA2-3
Chromo_MIT1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
125967781
NCBI-ProteinID:
XP_049575074
LinkDB
All DBs
Position
4:19644338..19687221
Genome browser
AA seq
2934 aa
AA seq
DB search
MDFFDDPNLFGGGLEGVDVDGFPSAPSFVDELNLTADFEPIQVEPLAPGKNQDMMLPVSS
TSNHQAVPSYGQQMGHYIGIKAQNPVGQPFSNPGGTGGVAAEQRGHYHNGPVSQVPQSNG
LFFNSSSPMWGNQDQNGNMYHPLSQQQQQQLYNQQMHVGQPQRHHPHQHRMRQQQQRLSH
PQQLFNQSQHQHMNMQAMPLQQRHHHGFPFHQGSQPQSQQQVHQSPQQPQHQLAAVGTRF
HSAVVPSPNDHMPGSCLQQQQKRSFSCRLGMVENNPPMESSSLVHSLPTYSVSSVTTYRP
AQYPSYPGEPEMCLSRPSMSSVAAGRAAATATPLAATLPELPGAACQFPSASLMGQHHAQ
TSVNQAEQCPFQALRCRGETQGNKLSEMFGESMSCYPGVAHQLPSEQPQRHANGYPSLGD
NLLASEAQNGDLAGLEPPDLLPDFLPQLEAALSQPDQSNGSWGDSNQAWGHEHRTQTPVG
QKEDKPRKNTNGPASHVRALSPVMKSSSSSSSSSSSSSSSSSSSSSSSSSSPSEKRTPRR
THLQTEVVPLDKQEKANRIISEAIAKARQRGEKNIPRIMSPESFPSSSSQHKSHQEHKGN
GKTRSKFKASRKASIVPSSASKQKPKIGKIVIKIGKKKKRKPESSEEESDDDPPPRHTSR
DSKRRSNRQVKRKKYAEELEARLSDEDGKVIVKAKKANVVASKQPAVQLFVENPSEEDAA
VVDKIMSSRVVKKEVSPGVLVEVEEFFVKYKNYSYLHCEWATEGQLEKDKRIQQKIKRFK
MKQAQRALFFADMEEELFNPDYVEVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTW
ELKDDVDQSKIEEFEQLQAAKPDSRRVDRPPANLWKKRDQSRQYRNGNSLRDYQLEGVNW
LLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRVGIKTPFLIIAPLSTIANWEREFRTW
THMNVIVYHGSVVSRQMLQQYEMYFRDAQGRVLRGAYKFQAVITTFEMILGGCPELNAIE
WRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPARFPS
ENTFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYY
RAILEKNFSFLAKGAGQANMPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVYSPAAL
DFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDG
RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA
RCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGAAGGTG
GGAVQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGS
TFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMEMANGRNSLVIDTPRVRKQTRPFSS
TKDELAELSEGESDSDDTKPKVRRAHERPNSYGRTECFRVEKNLLVYGWGRWKDILNHGR
FKKQLTDWDVESICRALLAYCLVHYRGDDKIKGFMWDLIAPAEDGRTKELQNHLGLSAPV
PRGRKGKKMKTQSSSFDIHKAEWLRKHNPEHILQDDGYKKHLKHHCNKVLLRVRMLYYLK
QEVIGEEAQNVLNNVDASDIKIWVPEPDHSELPALWWDILSDKCLLLGVYKHGYEKYNTI
RADPALCFLDRVGRPDDKAIAAEQRSNDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDL
VVTDNAGDTGSGAAGAYWPPSSLLTARLRRLITASQRYTKSRQILQIHQVQSQCQSQLAA
MMSTPLGPPPPSAAMLMPPAVLSDPLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFN
PTLGRFDWTKFRAMARLHKKTDESLQKYLCAFAAMCRRVCRLPPKEGDSAVDPSLNIQPI
TEERASRTLYRVELLRQVREQVLCHPLLYERLPLCQISSDLPAWWEVGTHDRDLLIGAAK
HGVSRTDYHILRDPDLGFMAAQRSYSQTKAVPQRQSLGITPLLQPQYQASASASAVPPPA
PRDSETGGVIPKVEPPSEGEENREKAKENWTPALAAETPAGVAEDKLDSEGQMVAARTKP
LTPNSSERKPKKASKRGRRERRASGAESDRSSSSSSSRSSSSSSSSSSSSSHTGSSSSSS
SSSCSSGSSSSSSSSSSSDDSDSEGEDGKKKVPAAPSVKGFDEDSVASLGTVHNDAQDSH
AAQNGVTNSASHPFQAGGYMLAASHWPKDRVIINRLDSICQAVLKGKWPATRRVYEPGGP
VASFYTTKLLDSSLCEDPSASPQGSKVTEHVAESKEFSVKLNDQEGGLKLTFQKQGLPLK
RALDSEEAPQAQQQQYLARLHDLQSASDTGLADITKPQCSFQNSFSGTVRLNGVLDCQPV
VKRRRGRRKNVEGMDLLFMNRTQVPEQAAPGWGGIGQVGAAIPGYNHQTSGLGPEDVESR
VSVINLKDGTRLAGDDAPKRKDLDQWLKEHPGFVADTGAFIPGVNKMPLQFHVQDGRPKQ
KRHRCRNPNKIDVNSLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEW
ADVVKQSGYLPASMFDRILTGPIVPEEVSRRGRRPKNPLVKAATAAMTPNTTAMAASSAL
GLNPLLANGLLAGMDLSSLQALQQNLQLTAGLMGLPPSDAGNLAASNLAAMFPMMLSGMA
GLPNLLDVSGLLGKNQEGGAAGTSGAGSEDKEMGIGGTTGEPCAPSEERTKGGDSAAAAA
SSQSASSTSSPPLPLNPLLLSSMLYPGMLLTPGLNLPVPNTQPDNTPVPPPSPPPPPQAP
AVKAETPEDDDDDDDDEDEESGEHKDNSGKAESSSSDSGSSSSSSDDSDSSSKD
NT seq
8805 nt
NT seq
+upstream
nt +downstream
nt
atggatttttttgacgaccccaatctctttggtggaggtctggaaggggtggacgtcgac
ggcttcccgtcagctccgtcgtttgtggatgagctcaatctcaccgcagactttgagcct
atccaagtggagcctctcgctcctgggaaaaaccaagacatgatgctgccggtgtcttcc
acgtccaaccaccaagccgtgccttcgtacggtcagcagatggggcactacattggaatt
aaggcacagaatcctgttgggcagccattttccaatcctggtggcacaggcggtgtggcg
gcagagcaacggggccattaccacaatggccccgtcagccaagtacctcaatccaatggg
ttgttcttcaacagtagcagcccgatgtgggggaatcaggaccagaacggtaacatgtac
catcctttgtcccagcagcagcagcagcaactgtacaaccagcaaatgcatgtcggacag
ccacaaaggcatcatccgcatcagcacaggatgcgtcaacagcaacaacggctgagtcac
ccgcaacagctgttcaaccagagccagcatcaacacatgaacatgcaggccatgcctttg
cagcaacgccaccatcacgggttcccctttcaccaggggagccagcctcagagccagcag
caggttcaccagagtccacagcagcctcaacaccagctagctgcggtgggaacaaggttt
cattcagcagtagtgccgagtccaaatgaccacatgccgggatcttgcctgcagcagcaa
cagaagcgcagcttctcttgccgattaggaatggttgaaaacaacccacccatggagtcg
tcatctttggttcactcactgcccacttactctgtgagttctgtcaccacttaccgacca
gctcagtacccttcctaccccggagagccagaaatgtgtctgagtcggccgtctatgtcg
tcggtggcggcgggccgagccgccgccaccgctactcccctggcggcaactctgcccgag
ctcccgggggcagcatgtcagttcccatccgcatcacttatgggtcagcatcatgctcag
acctccgttaatcaggcagagcaatgtccttttcaagctttacgctgtcgtggagaaacg
cagggaaacaagttgtccgagatgtttggcgaatccatgagctgctacccgggtgtggcc
caccagttgccctctgagcagcctcagcgccacgcgaacggatacccatccctcggggac
aatctcttggcatcggaggctcagaatggagatttggcagggttggagccccctgacctc
ttgccggactttctgccccagctggaggccgcgctcagccaaccagatcaatccaacggt
tcctggggtgattccaaccaggcgtgggggcacgagcatcggacacaaacacctgttgga
caaaaggaagacaagcctcgaaagaacaccaatggtcccgcgagccacgtccgggcgctc
agtcctgtgatgaagagcagctcgtcgtcgtcctcctcttcatcatcctcgtcgtcgtca
tcttcatcgtcgtcctcgtcctcgtctagctctccctcggagaagaggacgccgcggcgg
acgcacctccagacggaagttgtgcccttggacaagcaggaaaaggccaatcggatcata
tcggaggccatagctaaagcccgccagcgcggcgagaagaacatcccgaggatcatgagc
ccggagagcttccccagctcatcgtcccagcacaaaagccaccaggagcataaaggaaac
ggcaaaacgcggtccaaatttaaagcctccaggaaggcctccatcgtcccttcctccgca
tccaaacagaagcccaagatagggaaaattgtcatcaagattggaaagaagaagaagcga
aagcccgagtcttctgaagaggagtcggatgatgaccctccgcctcgacacacttccaga
gactcgaagagacgctccaatcgtcaggtgaagaggaagaaatatgccgaggagctggag
gccagactgtcagacgaggacggcaaagtgatcgtcaaagccaagaaggccaacgtggtg
gcctccaagcagcctgcagtgcagctctttgtggaaaaccccagtgaagaagacgccgcc
gtggtggacaaaatcatgtcctctcgtgtcgtcaagaaggaggtttccccaggcgtgctg
gttgaagtggaagaattttttgtcaagtacaaaaactactcctacctccactgcgagtgg
gccacggagggccagctggaaaaggacaagcggatccagcagaagatcaaacgcttcaag
atgaaacaggcacagcgggcacttttcttcgccgacatggaagaagagctcttcaacccg
gactatgtcgaggtggaccgtgtgctcgaggtgtcatattgcgaagacaaagacacagga
gaggaagtggtctactacctggtgaagtggtgctccctgccctacgaggacagcacctgg
gagctgaaggacgacgtggatcagagcaaaatagaggagttcgagcagctgcaggcggcc
aagccggactcgcgcagagtggatcggcccccagccaacctatggaagaagagggatcaa
tcgcggcaatacaggaacggcaacagcctcagggactaccagctggagggggtcaactgg
ctgctctttaactggtacaacaggcgaaactgcatactggctgacgagatgggcctgggc
aagaccatccagtccatcaccttcctggaggagatctaccgcgtgggcatcaagacgcct
ttcctcatcatcgccccgctgtccaccatcgccaactgggagcgcgagttccgcacgtgg
acgcacatgaacgtcatcgtgtaccacggcagtgttgtcagcaggcagatgctgcagcag
tacgagatgtacttcagggacgcgcagggtcgcgtgttgcgaggcgcctacaagttccag
gcggtcatcaccacattcgagatgatcctgggaggctgtccggagctcaatgccatcgag
tggcgctgtgtcatcatcgacgaggcgcaccgcctcaagaacaagaactgcaagctgctg
gaaggcttcaagctcatgagcctggagcacaaggtcctgctgacgggcactcctctccaa
aacacagtggaggaactcttcagcctattgcacttcctggagccggcacgtttcccgtcg
gaaaacaccttcatgcaggagtttggagacctcaagactgaagaacaggtccagaagctg
cagggcatccttaagccgatgatgctgcggcgcctgaaggaagatgtggagaagaagctg
gcgcccaaagaggagaccatcatcgaggtggagctcaccaacattcaaaagaagtactat
cgtgccatcctggagaagaacttctccttcctggccaagggagcgggccaggcaaacatg
cccaacctggtcaacactatgatggaattgaggaagtgctgcaaccacccctacctcatc
aaaggggcagaagagaaaatcctggaggacttcagggaggtttatagcccggctgccttg
gacttccacttgcaagccatggtgcagtctgccgggaagctggtcctcatcgacaaactg
ctgcccaagatgaaagccggcgggcacaaggtgctcatcttctcccaaatggtgcgctgc
ttggacatcttggaagactacctcatacagagaaggtacttgtacgagcggatagacggt
cgcgttcgtggaaacctacgacaggcggccatcgaccgcttcagcaagcccgactcggac
cgcttcgtgtttctactgtgcacgcgagccggtggcctggggatcaacctcacggcggca
gacacctgcatcatttttgactcggactggaacccgcagaacgacctccaggcgcaggca
cgttgccatcggattggtcagaacaaagcggtgaaggtgtaccgcctgatcaccaggaac
tcatacgagcgagagatgtttgaccgcgccagcctcaaactgggtttggacaaagctgtg
ttgcaaagcatgagcggccgcgacaacagcctgggaggaggtgcagcaggaggcactggg
ggaggggcggtccagcaacagttatccaaaaaggagattgaggatctccttcgacgcgga
gcctacggcgccatcatggacgaggaggacgagggggccaagttttgcgaggaggacatt
gaccagatcctccaacggcgaaccaagaccatcactatcgagtccgagggccgaggctcc
acctttgccaaggccagttttgtagcatccgggaaccgcacagacatctcgctggatgac
cccaacttctgggacaagtgggcgaaaaaggccgacatcgacatggaaatggccaatggc
agaaacagcctggttatcgacacgccccgcgtcaggaagcagacgcggcctttcagctcc
accaaggatgagttggcggagctgtccgagggcgagagcgacagcgacgacaccaaaccc
aaagtcagacgagcccacgagcggcccaacagctacggacgcacagaatgcttccgcgtg
gagaagaatctgctagtatacgggtggggccgctggaaggacatcctcaaccacggtcgt
tttaagaagcagctgaccgactgggacgtggagtccatctgcagggcgctgctggcttac
tgtttggtgcactatcgtggcgatgacaaaatcaaaggcttcatgtgggatctgattgca
cccgccgaagacggccgcactaaggagctgcagaatcacttgggtctgtccgcacctgtt
cctcggggccgcaagggcaagaagatgaagacccagtccagttcgtttgacatccacaag
gctgagtggctacggaagcacaacccggagcatatactccaggacgacggctacaagaaa
cacctcaagcatcactgtaacaaggtgttgctccgggtcagaatgctgtactacctgaaa
caagaggtgataggcgaggaggcccagaacgttctgaacaacgtggatgctagtgacatc
aagatctgggtgccggagccggaccattcggaactgccggccttgtggtgggacatcctc
tctgacaagtgtctgctactgggggtctacaagcatggttatgagaagtacaacaccatc
cgagcggaccccgcgctgtgcttcctagaccgtgtcggccgaccggacgacaaggccatc
gctgccgaacagagaagcaacgatttcatggacggggatgtggacgatccagagtacaag
cccgctccagctctgctgaaggacgacatggaggatgatgcctcttctcccggagacttg
gttgtcactgacaacgccggagacacgggttcgggagcagcgggtgcatactggcccccg
tcctccttgctcactgcccggctgaggcgtctgatcaccgcctcgcagcgctacaccaag
agccggcagatcctgcaaatccaccaagtgcagtcgcagtgccagtctcagctggccgcc
atgatgtcgacgccgctcggcccgccgccaccatcggccgcgatgctgatgccgccagcg
gttctcagtgacccgcttaaccccaagatggccgccaagattgaacgacaacaaaggtgg
accaggcgggaagaggccgacttctaccgggtggtctccacctttggtgtggtcttcaac
ccgacgctgggccgcttcgactggacaaaatttcgggcgatggcacggctgcacaagaag
acagacgaaagcctgcagaagtacctgtgcgccttcgctgccatgtgcagacgcgtttgc
cgcctgccgcccaaagaaggagactctgcagtggacccatccctcaacatccagcccatc
acagaggaacgggcgtcacgcaccttgtaccgggtggaactgctgcgccaggtgagagag
caggtcctttgccaccccttgctctacgagcgcctgccgctgtgccagatcagctccgac
ttgcctgcatggtgggaggtcggcacccacgaccgggacctgctcattggcgccgccaag
cacggggtcagccgcacggattatcacatactccgagaccccgatttgggctttatggca
gcccagcgcagctacagtcagacaaaagcggtgccgcaacgacagtcgctaggcatcacg
cccctcttgcaacctcagtaccaggcatcggcctctgcttcggcagtcccgcctcccgcc
ccgagggactcagagactggcggggttatcccgaaagtggagcccccctcagaaggggag
gaaaacagagagaaagcgaaagagaactggactcccgccctcgcagcggagacccccgca
ggagttgccgaggacaaacttgacagcgagggacagatggtggcagcaaggacaaagccc
ctcacacccaactcctcagagagaaagcccaagaaggccagcaagaggggccgcagggag
aggcgggcctcaggggccgagtcggaccgctcgtcttccagctcttcgtcgcgctcctcc
tcatcttcttcgtcgtcctcttcttcctcgtcccacactgggtccagctcctcttcgtct
tcatcgtcctgctcctctggctcttcgtcgtcgtcctcctcttcctcttcttcggatgac
agtgacagcgaaggagaggacgggaagaagaaagtgcctgcagccccaagcgtgaagggc
ttcgacgaggacagcgtggcgtcgttaggcaccgtgcacaacgatgcgcaagactcccac
gccgcccagaacggagtcaccaacagcgcgtcgcatcccttccaggcgggaggctacatg
ctcgctgcctcccactggcctaaggaccgggtgatcatcaaccgtctggacagcatatgc
caggcggtgctgaagggcaaatggccggccacgcggcgcgtctacgagcccggcggcccc
gtggcgtccttctacaccaccaagcttttggacagcagcctgtgcgaggacccctcggcc
tcgccacaggggtcaaaggtgaccgagcatgttgcagaaagcaaggaattctcagtcaag
ctgaacgatcaggagggaggtctcaagttgaccttccagaaacagggtctacctctgaag
agagccctggactcagaggaggcaccccaagcccagcagcagcagtatctggcccggctc
catgatctgcagagcgcctctgacacgggcctggctgacatcaccaagccacaatgcagc
ttccagaacagtttttctggcaccgtgaggctgaacggggttctggattgccaaccggtg
gtgaagcgtcgacgggggaggaggaagaacgtggagggcatggacctgctcttcatgaac
aggactcaggttcccgaacaggcggctcctgggtggggcggcattggccaagtgggcgcg
gcaattccagggtacaaccaccagacctctgggctgggcccggaagacgtggagagcagg
gtctcggtcatcaacctcaaagacggcacccggctggctggggacgacgctcccaagagg
aaagacctggaccagtggctgaaggagcacccgggcttcgtggccgacacgggcgctttt
atccccggcgtgaacaagatgcctctgcagttccacgtccaggacgggcgacccaagcag
aagaggcaccgctgccggaaccccaacaaaatcgacgtcaacagcctgacgggcgaggag
cgagtgcagatcatcaacaggaggaacgcccgaaaggttggtggagcttttgcgcctcct
ctcaaggatctgtgccgcttccttcaggagaacccggagtacggcgtcccgcccgaatgg
gccgacgtcgtcaaacagtcgggttacctcccagcgagcatgtttgacaggatcctgacg
ggtcccatcgttcccgaggaggtgagccggcgagggcggcgtccaaagaatcctctggtt
aaggcagcgacggcggccatgacgcctaacactacggcgatggcggcgtcctccgccctg
ggcctcaaccccctgctggccaacgggcttctggcgggcatggacctgagcagccttcag
gccttacagcagaacctgcagctcaccgccggcctcatgggcctgcccccctcggacgcc
ggaaacctggcggcgagtaatctggccgccatgtttcccatgatgctctcaggcatggcg
gggctacccaacctcctggatgtgagcggcttgctcgggaagaatcaggaaggaggcgcg
gccggcacgagcggcgcaggctccgaggacaaggagatgggaatcggcggcactacagga
gagccctgcgcccccagcgaggaacggacaaaaggcggcgactccgccgccgccgccgcc
tcctcccaaagtgcctcgtccacctctagcccccctctcccgctcaaccccttgttgctg
tccagcatgctttacccagggatgcttctcactccaggccttaaccttcccgtgcccaac
acgcaacccgacaacacgccggttcctcctcccagtcccccgcctcctcctcaagcaccc
gctgtcaaagcggaaactcctgaagatgacgacgacgacgacgacgatgaggatgaagaa
tcaggagagcacaaagacaacagcgggaaagccgagtcgtcttcatccgactccgggagc
tcttcttcttcctcagacgactctgactccagcagcaaggactga
DBGET
integrated database retrieval system
