KEGG   Syngnathus scovelli (Gulf pipefish): 125968340
Entry
125968340         CDS       T08785                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125968340 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sscv03021]
    125968340 (taf5)
   03036 Chromosome and associated proteins [BR:sscv03036]
    125968340 (taf5)
Transcription machinery [BR:sscv03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125968340 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     125968340 (taf5)
Chromosome and associated proteins [BR:sscv03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     125968340 (taf5)
    STAGA complex
     125968340 (taf5)
    TFTC complex
     125968340 (taf5)
    SAGA complex
     125968340 (taf5)
    SLIK complex
     125968340 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML WDR55 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_DCAF12 Tricorn_2nd WD_LRWD1 Beta-prop_Nup120_160 PEP5_VPS11_N VPS8_N PROPPIN eIF2A LisH_PAC1 Beta-prop_ACSF4 LisH_TPL Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 125968340
NCBI-ProteinID: XP_049575261
LinkDB
Position
5:complement(10247506..10252303)
AA seq 747 aa
MAAVQGGMADAVEIKDIKTEPPVDAVVNNNANDGRVLSASPGSGASVGSNKAATGTLEEK
QTLLAILQFLKKNQLSESVDILRREAGLPQDFFDSKAGDTSSVSGGASGTVEEGALDANS
LLSRVTSSSETQAPVKAPPAEDQPDVSVVLSAYSQQGDPTLYEVYYSGLKKFIETVLDCH
RAELSQVFYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYRDDLQVLSGLTKREHMR
GNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQI
DAMSGSLAGEGKREANKAKVFYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSVCFYSFLNAYQG
LTAVDFTDDSSLIAGGFADSSVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKT
ASESKLLYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPHGYYFVSGGHDRVARLWVTDHYQPLRMFAGHLADITCTRFHPNSNYVATGSSDRTIR
LWDVLNGNCVRIFTGHKGPIHALTFSPNGKFLASGATDGRVLLWDIGHGLMIGELKGHTD
TIYSLKFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTATTGHVHLQDNSQELLLGC
YTTKSSPVLHLHFTRRNLLLAAGGYNP
NT seq 2244 nt   +upstreamnt  +downstreamnt
atggcggccgtacaaggcggtatggccgacgctgttgaaataaaggacattaaaacggaa
ccacccgttgatgccgtcgtaaacaacaacgcaaatgatggaagggtactttctgcgtcc
ccagggtccggtgcttcggttggaagtaacaaagccgcaacaggaaccctggaagagaag
cagacgctgctggcaattctgcaattccttaaaaagaaccaactgtccgagtctgtcgac
attttgcgtcgagaagctggattaccgcaggattttttcgattccaaggctggtgatacg
tcctcggtttctgggggtgcatcaggaacggtggaagaaggagctctggatgccaactct
ctactgagccgagtgacatcctcttccgaaactcaagcgccagtcaaagctccacctgca
gaggaccaaccagatgtgagtgtagttttatctgcttacagccaacagggagacccaact
ctctatgaggtttattacagcggcttaaaaaagtttatagagacagttttggactgtcat
cgagcagaactatcccaggttttctacccactctttgtgcacatgtacctggaactggta
tacaacaaccatgagaatgaagccaaggcgttttttgaaaagtttagcggggatcaagaa
tgttattacagagatgaccttcaagtcttgtcaggtttgacaaaaagggagcacatgaga
ggcaacgagactttgctcgactttcgcaccagcaagtttgtcctgcgcatctctcgggac
tcctaccaattgctcaagaggcacctgcaagagcgccagaacaaccagatctggaatatc
atccaagagcacctctacattgacatctttgatggcatgccacgaagcaagagccagatc
gatgccatgtctggtagtttggctggagagggcaagagagaggccaataaggcaaaggtt
ttttatggcttgcttaaggaaccggaaatcgaactgccgctcgatgatgaggatgaggaa
gcagagaacgaggagggcaaacccaagaagaagaaacctaaaaaggacagcatgggctcc
aagagcaagaagcaggatcccaatgcaccatcacaaacaaggatacctcttccggaacta
aaagactcggacaaattggacaaaatcatgtacatgaaggaggccaccaagaggatccga
ctgggaccagataacctcccttctgtttgcttctactcttttctcaatgcataccagggt
ttaactgctgtagacttcacggatgactccagtttaattgcaggaggcttcgctgactcc
tcagtcagagtgtggagtgtcactccgaaaaaactacgcaaagtcaagtctgccgcagac
ttaaacctgattgataaagagtcagatgatgtactagagaggatcatggatgaaaagaca
gcgagcgagtccaagctcctgtacgggcacagtggtcctgtttatggtatcagcttcagc
ccagacaggaactacctgctgtcgagttctgaagatggcacagtgaggctgtggagtctc
caaaccttcacctgcctggtgggctacaaaggccacaactaccctgtgtgggacacccag
ttttctcctcatggctactattttgtctccgggggacatgacagagttgcccgtctgtgg
gttacagatcattatcaacctctgcggatgtttgctggtcacctggcggacatcacttgc
acccgcttccatcccaactccaattatgtggccacgggttcttctgatcgtacgatccgc
ctgtgggatgtcctgaatggaaactgtgttcgcatcttcactggtcacaagggtccaatc
catgctctgacattctctcccaacgggaagtttttggcttcgggggctactgacggcaga
gttcttctttgggacattggtcacggactcatgattggagagctcaaaggccatacagat
accatctactctctcaaattcagcagggatggtgaaattcttgcctctggctctatggat
aacacagttcgcctgtggaatgccacgaaagcattcgatgatttggagacggacgacttc
accgcaacgactggacacgttcatttacaggataactcacaggagcttctgcttggctgc
tacacaactaaatcctcaccggtccttcaccttcacttcactcgcagaaatctgctcttg
gcagcaggcggctataatccataa

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