Syngnathus scovelli (Gulf pipefish): 125968391
Help
Entry
125968391 CDS
T08785
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125968391
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125968391
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125968391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125968391
NCBI-ProteinID:
XP_049575343
LinkDB
All DBs
Position
5:complement(9715167..9722386)
Genome browser
AA seq
620 aa
AA seq
DB search
MRRGSSYDYRDRDRGRDGSRYGSMGGHSYGPPPMKTGNLGDRLRKKRWNLDELPKFEKNF
YTEHPEVQRLSQYEVEEFRRKREITIQGSDCPKPVMTFQQAQFPQYVMDVLMQQNFTEPT
SIQAQGFPLALSGKDMVGIAQTGSGKTLAYLLPSIVYINHQPYLERGDGPICLVLAPTRE
LAQQVQQVASDYGKSSRIKSTCVYGGAPKGPQLRELERGVEICIATPGRLIDFLESGKTN
LSRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKDVRQLAEDFLRDYI
QINVGALELSANHNILQIVDVCMDSEKDHKLMQLMEEIMAEKENKTIIFVETKKRCDDLT
RRMRRDGWPAMCIHGDKTQPERDWVLTEFRSGKAPILIATDVASRGLDVEDIKFVINFDY
PNSSEDYVHRIGRTARSTNKGTAYTFFTPGNARQARDLVRVLQEASQAINPKLLQMVDSS
HGRGSGGRMRYRGSSSNNPNMMYHNECQRRMRSGEGSSSRNDDAPSSSYSDQRRTSHSSD
EYQGYSGSRNPSGGPSASGTGMDHSSHLQGQFAQPPPPSVPPVGVQPLMQFAPSPQPPLM
GFVGNPPHPFNPPTYGPSSH
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggggttcttcctatgactacagagacagggaccgtggacgagacgggtctcgt
tatgggtcaatgggtggtcacagttatggccccccacccatgaagactgggaatcttggc
gaccggctccgcaagaagaggtggaacctggatgagttgccaaagtttgagaagaacttc
tatactgagcacccagaagttcagcgcttgagtcagtatgaagttgaagagtttcgtaga
aagagagagatcaccatccaaggctctgactgtcctaagcctgtaatgacttttcaacag
gcacagtttccacaatacgtgatggatgtgctcatgcagcagaacttcacggagcccacg
tcgattcaggctcagggcttccctttggcactgagtggcaaggacatggtggggatcgca
caaaccggatctggtaaaactcttgcttatctccttccatcaattgtgtacattaatcat
cagccctatctggagagaggagatggtcctatttgtttggtccttgccccgaccagagag
ctggctcagcaggttcagcaagtggcttctgactatggcaaatcttccagaatcaaaagc
acttgtgtttatggtggcgcacccaaaggaccgcagcttcgagagctagagaggggtgtt
gagatctgcatcgccacgcctggtcgcttgattgacttcttagagtcagggaagactaac
ctgagtcggtgcacataccttgtgctggacgaagctgaccgcatgctggatatgggattc
gaaccacagattcgcaagatagttgaacaaatcaggcctgacagacaaaccctcatgtgg
agtgcaacttggcccaaagatgtccgtcaactcgctgaagactttttgagggactatatt
cagataaatgtaggagcccttgagctcagtgccaaccacaacatcctgcaaattgttgat
gtctgcatggacagcgaaaaggaccacaaacttatgcagctcatggaagagattatggca
gaaaaggagaacaaaacgatcatctttgtggagaccaagaaacgctgtgatgatctgaca
agaaggatgcgaagggatgggtggccagccatgtgtatccacggagacaagacccaacca
gaaagagactgggtgctcacagaattccgaagcgggaaagctcctattctgattgccaca
gatgtcgcctctcgtggtctggatgttgaagatatcaagtttgtcatcaactttgactat
ccaaattcctctgaagattacgtccaccgtattggacgtacggcccgcagtaccaacaaa
ggcactgcctacacctttttcactcctgggaacgcgcggcaggctcgcgaccttgtccga
gttttgcaggaggccagtcaggccatcaaccctaagctgcttcagatggtggattcgagc
cacggaagaggaagtggtggcagaatgcgttaccgtggcagcagctccaacaatcccaac
atgatgtaccacaatgagtgtcagcgccgcatgcgttccggtgagggaagcagcagccgt
aacgatgacgccccctcatcctcgtacagcgaccagcgcaggacgagtcacagttcggat
gagtaccaaggctacagtggcagccgcaacccgagcggaggcccatctgctagcggtaca
gggatggatcactcgagtcatcttcagggtcagtttgcccagcctcctcctccatccgtg
ccgcctgttggggtacagcctctcatgcagtttgcgccatcaccacagcctccgttaatg
ggctttgttgggaatccccctcacccgtttaacccgcctacttacggcccttcttcccac
tag
DBGET
integrated database retrieval system
