Syngnathus scovelli (Gulf pipefish): 125968475
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Entry
125968475 CDS
T08785
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04136
Autophagy - other
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125968475 (atg4b)
04136 Autophagy - other
125968475 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125968475 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125968475 (atg4b)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125968475 (atg4b)
Peptidases and inhibitors [BR:
sscv01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
125968475 (atg4b)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
125968475 (atg4b)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125968475 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
125968475
NCBI-ProteinID:
XP_049575544
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All DBs
Position
10:2993469..2997474
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AA seq
395 aa
AA seq
DB search
MDAALTYDTLRFGEIEDFPETSDPVWILGREYNALTEKDDILSDVTSRLWFTYRKNFPPI
GGTGPTSDTGWGCMLRCGQMILGEALMCRHLGRDWRWSSGQKQREEYVSILNAFIDKKDS
YYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIKR
LCMPWLDAADLGACGDSTATSQLNGCMEGACAFSGEDVELWRPLVLLIPLRLGLSDINDA
YIQTLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCDDGQVPDDT
YHCQHPPCRMHICELDPSIAAGFFCRTEDDFDDWCMRIRRLSCNRGGLPMFELVDSQPSH
MVSVDALNLTPDFSESDRLERFFDSEDEEFEILSL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagcgttgacatatgacacgcttcgctttggcgagattgaggatttccccgag
acctccgaccctgtttggattttagggagagaatacaacgcgctcacagaaaaagatgac
atcctatcagacgtcacctcacgactttggttcacatacagaaaaaacttcccccccata
ggaggcacggggcccacgtcagacacaggttggggctgcatgctgcggtgcgggcagatg
atcttgggcgaggccctgatgtgccgacacttgggcagagactggcgatggtcatcaggg
cagaagcagagagaagagtacgtcagcatcctcaacgccttcatcgacaagaaagatagt
tactattccatacatcagatcgcccaaatgggagttggcgaggggaagcccataggacag
tggtacggaccaaacacagtggcacaggttctcaagaagctggcagtgttcgacacgtgg
agcaggttggtggtgcacgtggccatggacaacacggtggtcatcgaggagatcaagcgt
ctgtgcatgccttggctggatgcggcggatctgggagcgtgcggcgattcgacggcgacc
agccaactgaacggctgtatggagggcgcctgcgctttctcgggggaggatgtggaactt
tggaggccgctcgtcctcctcatcccgctcaggcttggactcagtgatatcaacgacgcc
tacatacaaacactcaagcaatgtttcatgctgccacagtcgctcggcgtcattggcggg
aaaccaaacagtgctcactacttcatcggttacgtcggcgaggagctgatctacttggac
cctcacaccacgcagcccgccgtggaaccctgcgacgacggccaggtgcccgacgacacg
taccactgccagcacccgccctgccgcatgcacatctgcgaactggacccgtccatcgcc
gccggtttcttttgcagaacggaggacgactttgacgactggtgcatgcgcatacggagg
ttgtcgtgcaacagaggaggcttgccgatgtttgagctggtggacagtcagccgtcacat
atggtcagcgtggacgcgctcaaccttactcctgacttctccgaatcggaccgtctggag
cgcttctttgactctgaggacgaagagtttgagatcctttctttgtga
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