Syngnathus scovelli (Gulf pipefish): 125968551
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Entry
125968551 CDS
T08785
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03030
DNA replication
sscv03410
Base excision repair
sscv03420
Nucleotide excision repair
sscv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125968551 (rfc1)
03410 Base excision repair
125968551 (rfc1)
03420 Nucleotide excision repair
125968551 (rfc1)
03430 Mismatch repair
125968551 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125968551 (rfc1)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125968551 (rfc1)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125968551 (rfc1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125968551 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
RuvB_N
AAA_5
Rad17
AAA_17
BRCT_2
AAA_33
AAA_16
AAA_14
AAA_18
nSTAND3
AAA_19
AAA_7
IL8
RNA_helicase
NTPase_1
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
125968551
NCBI-ProteinID:
XP_068507025
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All DBs
Position
5:complement(6187128..6196376)
Genome browser
AA seq
1181 aa
AA seq
DB search
MRQLRNTRAKKLRGFPPLDNKSETPRGDVFIMDIRRFFAPSTQKVTPNGNVSTKRKLSSE
EELKKKKDTKMKKQETREKRVPDKKRKKQAIIESDSDSEERDNKSTKLPKKQKISKAAQS
RKKEPVNHILLSDSDSDNFESLKKSSITKQNGNSQKSNSSPSGKEAAESSIKSSSAHVKI
GATTPVTPKSAPPPRAKQTPTSVFDYFGNESIQRSGKKLVASTKRKTPTQDTDDLSDEQI
ARQLQMAEDDELEKQIHEDEDFARTLALLDSEPQAKKLRKGSDEKDVEAFPRKSNALSPS
KNNREDSMSEDVIGPSPKKSPATLKPSSKLGMMKRRNEGKDEDATKSKAQSKLKVSPHKE
PLAVSSSEKVQASKIGTAPKTSPIGPESTRPDEAEKKKLNTSAYRNYLNRDGPRALGSKE
IPTGADNCLEGCVFVLTGVLESMERDDTKSLIERYGGKVTGNISKKTTYLVQGRDSGVSK
LEKAESFGTKILSEDDLLELIRTKPGKKSKYEIAAEAEIKASKTRTPPGSASKITPKASK
ISPSKGNSKSPQTPSPSKTGQTTRRGGRTTHGGTPPGRGSAQTARRDLGLSSSSTSGPHS
VMKSVNNEGASLLWVDKYRPCSLKAVIGQQGEQSCANKLQRWLQSWFKHHSSGASKPPVA
RFGKFGAGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKTNLKEV
VAESLNNTSIDGFYKGTSQKVSAKHVLIMDEVDGMAGNEDRGGMQELIGLIKNSKIPIIC
MCNDRNHQKIRSLANYCFDLRFQRPRLEQIKAAMMSIAYKEGIKIPPPALNEIILASNQD
IRQVIHNLSMWSAKDKVMTYDQCKTDAAAARKDMKLGPFDVCRKVFAIGEETAHMSLIDK
SDLFFHDYSLAPLFVQENYLHVRPAAAGGNAKAHLVLLSKAADSISDGDLVDRRIRSGQN
WSLLPTQAIYASVIPGELMRGYMSHFPSFPSWLGKNSSAGKHSRVIQELATHMSLKTMSS
RQAVNLDYLYYLQQALLSPLQKLAAEGAGQAVQLLDDYQLIREDVDSMMEIASWGGQPDP
YSKLDSKVKAAFTRAYNKEVHLTPYSLQVVKKGRRGGGGGEETELEMQDGEKDASVSEDE
RDNLNVDAMIKQKKTKATKKEKTEDSGKGKGKGKGKGKAKK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaactgagaaatactcgcgccaagaagctgcgcgggttccctccacttgacaac
aaatctgaaacgccgcggggagacgtcttcataatggacatccggcgattctttgcgcct
tcaacacagaaagtgactcctaatggaaatgtcagcacgaagaggaaattatcctcagaa
gaagagttgaaaaagaagaaagacaccaagatgaagaaacaagaaacacgggagaaacgt
gtgcctgacaaaaaacggaaaaaacaagcaatcatcgaatcagattctgactcagaggag
cgagacaataagtccacgaaattgcctaagaagcaaaagatcagcaaagctgcacaatct
cgcaagaaagagcctgttaaccacatcttgctatcagactcagacagtgacaactttgaa
tccttgaagaagtcctccataaccaaacaaaatggcaactctcaaaagagcaactcaagt
ccaagtgggaaagaggctgcagagtcttccatcaagtcatcctctgctcatgtgaaaatt
ggagccacgactccggtcacaccaaagtcggcaccaccccctcgtgccaaacaaaccccc
acctctgtgtttgactactttggcaacgaaagcatccagcgctcggggaagaagctggtc
gccagcactaaacgaaagactcccacccaggacacggatgatctgagcgatgagcaaatt
gcgagacaactacaaatggctgaagatgatgagctggagaaacagatccatgaagatgaa
gactttgcaagaacacttgcactgctggattcagagccacaggccaaaaagcttcgtaaa
ggctcagacgaaaaagacgttgaggcattccccagaaagagtaatgcactcagcccttca
aagaacaacagagaggacagcatgtcagaggacgtgataggtccctcacccaagaaaagc
ccagctacactcaaacccagttccaaactagggatgatgaagagaagaaatgagggaaaa
gacgaagacgccacaaagagcaaagcgcagagcaaactgaaagtctcgccccacaaggag
ccactcgctgtgtcaagtagtgaaaaggtgcaggcatccaaaataggaactgcacctaaa
acttctcccattggaccagagagcacaagacccgatgaggcagaaaagaagaaactcaac
acttccgcctacaggaattacctcaatcgagatggaccacgagcactggggtccaaagaa
atccccacgggcgcagataactgtttggagggttgtgtctttgtgttgacgggcgttctg
gagtcaatggagagggatgacaccaaatccctcattgagcgctatggcggcaaagtgaca
ggcaacatcagcaagaagaccacctacctggtgcagggtcgagacagcggcgtctccaag
ctggagaaggcggagagttttgggactaaaatcttgagtgaggatgatctgttggagctg
attaggaccaaaccagggaagaagtctaagtatgagattgctgcagaggctgagatcaaa
gcctcaaagaccaggactcctccaggctcggcctcaaagatcacccctaaagcttcaaag
atctcgccttccaaaggcaactccaagtcccctcagactccaagtccctccaagacggga
cagacaaccagacgcggtggcagaaccacgcatggcggaacaccacccggaagaggctca
gctcaaactgctcgtagggacttgggcctttcttcctcctcaacctctggcccgcactct
gtgatgaaatcagtaaacaatgaaggtgccagtcttctgtgggtggacaaataccgccca
tgttcgctgaaggctgtgataggccagcaaggggagcaaagctgcgccaacaagttgcag
cgctggctgcaaagctggttcaagcatcacagcagcggtgcctccaaaccaccagttgcc
agatttggaaagtttggtgcaggaaaagatgatggatcaggatacaaagctgctctgctt
tccggaccacctggtgtggggaagaccactacagcagccctggtctgcgaggagttgggc
ttcagctacgtcgaaatgaatgcgagttgcacacgcagcaaaaccaacctgaaggaagtg
gttgcagagtccctcaacaacaccagcattgacggcttctacaaaggcacatcgcagaaa
gtcagcgctaaacacgtcttgatcatggacgaggtggatggcatggcgggcaatgaggat
cgaggcgggatgcaagaattgatcggcctcatcaaaaattccaagattcccattatctgc
atgtgcaacgatcggaaccaccagaagatcagatcattggccaattactgctttgatctg
cgcttccagagaccgcgcttggagcagatcaaggcagctatgatgtccattgcttacaag
gaaggcatcaagattccgcctccggcacttaatgaaattatcttggcctccaatcaagac
atcagacaggtgatccataacctcagcatgtggtcagccaaagacaaggtgatgacttat
gaccagtgcaagactgacgctgccgccgctcgcaaggacatgaagttaggaccatttgac
gtctgccggaaggtgtttgctatcggcgaggaaacggcccacatgagcctcattgacaag
tcggatctcttcttccacgactactcgctagcgcccctctttgtccaggagaattacttg
cacgttcggcctgccgccgctggcggcaatgcaaaggcccacctcgtgctactcagcaag
gctgccgactctatcagcgacggagacctggtggaccgccgcatccgctcagggcagaac
tggtctttgctacccacgcaggccatctacgccagtgtaatcccaggtgaactcatgaga
ggttacatgagtcatttcccgtccttcccaagctggctgggcaagaactcatcggcaggc
aaacattcccgcgtcatccaggagctggccacgcacatgtctttgaagacgatgagcagc
agacaggcggtgaacctggactacctctactacctgcaacaagccctgctcagcccctta
cagaagctggcggcggagggcgctggtcaggctgtgcagctgctggacgattaccagctc
atcagggaggacgtggacagtatgatggagatcgcttcatggggcggacaacctgacccc
tattctaaactggactccaaggtgaaagcagcgttcactagagcgtacaacaaggaagtt
catctgacaccgtactccctgcaagtcgtgaagaaggggcgccgtggcgggggtgggggt
gaagaaactgaactggaaatgcaggacggtgagaaggacgcctcagtgtctgaggatgag
cgggacaacctcaatgtggatgctatgatcaaacagaagaagaccaaagccaccaagaag
gaaaagaccgaggattctggaaagggcaaaggcaagggcaaaggcaagggcaaggctaaa
aagtga
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integrated database retrieval system
